Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0025883

Physical Location & Seq

Genomic Coordinates Reverse (-)

53201027 .. 53204738

Gene Structure 3712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00204130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTCCAGGGCAACCTTGGCGATAGCCTTGCGCCCAAGGAAATGTATCAAATGGTTTGTGGCACTTGATAGTGAGGATTATATATTAAGTATAGTACGATTTGGAGTTGTTTATAAAGGTGAATTGCATGATGGGACCAAAATCACTGTTAAAAGGATGGAATCTGTGGTAGTGGGTACCAAGGGGTTTCAAGCAGAAATTGCAGTCCTCACTAAACTAGGTCAAAGAGCCGGTCCGTGGAGTTTTGATCTCGTGCCGGTGGTGTTAAATGACTCTGACAATTGCTCCAATAATATTGTTCGTCTGGACGATTTCAGTTCACATCTTTGGCTTCCCGACGAGCTTCCTCACCTTGCCCGCCTGTCATTCTCATCATTTCATTGGCGAGTCATTGGGTCCAGTTTTGGATGTTGGACTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase_Tyr

Protein Analysis

140

Amino Acids

15.71

Weight (kDa)

8.52

Isoelectric Point (pI)

35.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025883)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_7G00204130
rosa_samantha	Rh6BG120800 Rh6CG119000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	114
Acc65I	GGTACC	1 cut(s)	176
AccB1I	GGYRCC	1 cut(s)	176
AciI	CCGC	1 cut(s)	358
AfaI	GTAC	2 cut(s)	96, 178
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	191
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	1 cut(s)	343
AluI	AGCT	1 cut(s)	343
ArsI	GACNNNNNNTTYG	2 cut(s)	217, 249
Asp718I	GGTACC	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	3 cut(s)	135, 233, 396
AsuHPI	GGTGA	2 cut(s)	131, 341
AvaII	GGWCC	3 cut(s)	135, 233, 396
BanI	GGYRCC	1 cut(s)	176
BauI	CACGAG	1 cut(s)	251
BccI	CCATC	2 cut(s)	125, 151
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BciT130I	CCWGG	1 cut(s)	7
BfaI	CTAG	1 cut(s)	218
Bme1390I	CCNGG	1 cut(s)	7
Bme18I	GGWCC	3 cut(s)	135, 233, 396
BmgT120I	GGNCC	3 cut(s)	135, 233, 396
BmiI	GGNNCC	3 cut(s)	136, 178, 397
BmrFI	CCNGG	1 cut(s)	7
BsaJI	CCNNGG	5 cut(s)	6, 15, 35, 180, 236
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse118I	RCCGGY	2 cut(s)	230, 256
Bse1I	ACTGG	2 cut(s)	399, 421
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	5 cut(s)	6, 15, 35, 180, 236
BseGI	GGATG	2 cut(s)	162, 413
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseNI	ACTGG	2 cut(s)	399, 421
BshNI	GGYRCC	1 cut(s)	176
BsiSI	CCGG	2 cut(s)	231, 257
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	1 cut(s)	358
BspLI	GGNNCC	3 cut(s)	136, 178, 397
BspT107I	GGYRCC	1 cut(s)	176
BsrFI	RCCGGY	2 cut(s)	230, 256
BsrI	ACTGG	2 cut(s)	399, 421
BssAI	RCCGGY	2 cut(s)	230, 256
BssECI	CCNNGG	5 cut(s)	6, 15, 35, 180, 236
BssMI	GATC	1 cut(s)	247
BssSI	CACGAG	1 cut(s)	251
BssT1I	CCWWGG	3 cut(s)	15, 35, 180
Bst2BI	CACGAG	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	148
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	358
BstDSI	CCRYGG	1 cut(s)	236
BstF5I	GGATG	2 cut(s)	162, 413
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 200
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	236
BtsCI	GGATG	2 cut(s)	162, 413
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	358
CfoI	GCGC	1 cut(s)	33
Cfr10I	RCCGGY	2 cut(s)	230, 256
Cfr13I	GGNCC	3 cut(s)	135, 233, 396
CpoI	CGGWCCG	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	95, 177
CspI	CGGWCCG	1 cut(s)	233
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	4 cut(s)	26, 230, 331, 343
CviKI_1	RGCY	4 cut(s)	26, 230, 331, 343
CviQI	GTAC	2 cut(s)	95, 177
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
Eco130I	CCWWGG	3 cut(s)	15, 35, 180
Eco47I	GGWCC	3 cut(s)	135, 233, 396
EcoRII	CCWGG	1 cut(s)	5
EcoT14I	CCWWGG	3 cut(s)	15, 35, 180
ErhI	CCWWGG	3 cut(s)	15, 35, 180
FaeI	CATG	1 cut(s)	131
FaiI	YATR	5 cut(s)	81, 83, 92, 114, 129
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	1 cut(s)	127
FauI	CCCGC	1 cut(s)	365
FokI	GGATG	1 cut(s)	169
FspBI	CTAG	1 cut(s)	218
GlaI	GCGC	1 cut(s)	32
HapII	CCGG	2 cut(s)	231, 257
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HinfI	GANTC	3 cut(s)	161, 272, 387
HpaII	CCGG	2 cut(s)	231, 257
HphI	GGTGA	2 cut(s)	131, 341
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	2 cut(s)	305, 335
Hpy8I	GTNNAC	1 cut(s)	320
Hpy99I	CGWCG	1 cut(s)	341
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	2 cut(s)	127, 203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 200
Hsp92II	CATG	1 cut(s)	131
HspAI	GCGC	1 cut(s)	31
KpnI	GGTACC	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	1 cut(s)	290
LpnPI	CCDG	7 cut(s)	19, 244, 270, 290, 374, 402, 412
MaeI	CTAG	1 cut(s)	218
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MfeI	CAATTG	1 cut(s)	280
MluCI	AATT	3 cut(s)	122, 198, 280
MlyI	GAGTC	2 cut(s)	266, 396
MmeI	TCCRAC	1 cut(s)	392
MnlI	CCTC	3 cut(s)	67, 218, 357
MseI	TTAA	3 cut(s)	86, 150, 266
MspI	CCGG	2 cut(s)	231, 257
MspR9I	CCNGG	1 cut(s)	7
MunI	CAATTG	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	2 cut(s)	17, 200
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	3 cut(s)	136, 178, 397
PfeI	GAWTC	1 cut(s)	161
PleI	GAGTC	2 cut(s)	266, 395
PpsI	GAGTC	2 cut(s)	266, 395
PsiI	TTATAA	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	3 cut(s)	136, 178, 397
PspPI	GGNCC	3 cut(s)	135, 233, 396
RsaI	GTAC	2 cut(s)	96, 178
RsaNI	GTAC	2 cut(s)	95, 177
Rsr2I	CGGWCCG	1 cut(s)	233
RsrII	CGGWCCG	1 cut(s)	233
SaqAI	TTAA	3 cut(s)	86, 150, 266
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	3 cut(s)	135, 233, 396
SchI	GAGTC	2 cut(s)	266, 396
ScrFI	CCNGG	1 cut(s)	7
SetI	ASST	5 cut(s)	17, 121, 223, 345, 354
SinI	GGWCC	3 cut(s)	135, 233, 396
Sse9I	AATT	3 cut(s)	122, 198, 280
SsiI	CCGC	1 cut(s)	358
SspI	AATATT	1 cut(s)	295
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	5
StyI	CCWWGG	3 cut(s)	15, 35, 180
TaaI	ACNGT	1 cut(s)	148
TasI	AATT	3 cut(s)	122, 198, 280
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	3 cut(s)	86, 150, 266
Tru9I	TTAA	3 cut(s)	86, 150, 266
TscAI	CASTG	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	368
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	151
VpaK11BI	GGWCC	3 cut(s)	135, 233, 396
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.