Rh6BG120800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0025883
Physical Location & Seq
Forward (+)
18766749 .. 18776238
9490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG120800.1

Sequence Viewer

Length: 354 bp
ATGAAATGTTCAGTTCCAAAACTGATGGGGGCAGAGAATGCAGAAGAGAGAGTAAACGAGCCTAAGGTGTGCGCGAGCAGGGTTGTTTCCAAGCAGCAGCGACGGTGCAGCGGTGTCTGCTCTTTTGGCGGTGTCAAGCTAGGGCAAAGAGCCGGTCCATTAAGTTTTGATCTCGTGCCGGTGGTGTTAAACGACTATGAGTCTATGACAATTGCTCCAATCGATAATATTGTTCGTCTGGACGATTTCAGTTCACATCTTTGGCTTCCCGACGAGCTTCTTCACCTTGCCCGCCTGTCATTTTCATTTCATTGGCGAGTCATTGGGTTCGGTTTTGGATGTTGGACTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.03

Weight (kDa)

7.66

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025883)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_7G00204130
rosa_samantha Rh6BG120800 Rh6CG119000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 74
AciI CCGC 3 cut(s) 111, 129, 292
AhdI GACNNNNNGTC 1 cut(s) 199
AluBI AGCT 2 cut(s) 139, 277
AluI AGCT 2 cut(s) 139, 277
ApeKI GCWGC 3 cut(s) 94, 97, 108
ArsI GACNNNNNNTTYG 2 cut(s) 139, 171
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 275
AvaII GGWCC 1 cut(s) 155
AxyI CCTNAGG 1 cut(s) 63
BauI CACGAG 1 cut(s) 173
BbvI GCAGC 3 cut(s) 106, 109, 120
BccI CCATC 1 cut(s) 19
BfaI CTAG 1 cut(s) 140
BisI GCNGC 3 cut(s) 95, 98, 109
BlsI GCNGC 3 cut(s) 96, 99, 110
Bme18I GGWCC 1 cut(s) 155
BmeRI GACNNNNNGTC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 155
Bsa29I ATCGAT 1 cut(s) 222
BsaXI ACNNNNNCTCC 2 cut(s) 199, 229
Bse118I RCCGGY 2 cut(s) 152, 178
Bse1I ACTGG 1 cut(s) 352
Bse21I CCTNAGG 1 cut(s) 63
BseCI ATCGAT 1 cut(s) 222
BseGI GGATG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 352
BseXI GCAGC 3 cut(s) 106, 109, 120
BsgI GTGCAG 1 cut(s) 127
Bsh1236I CGCG 1 cut(s) 74
BshVI ATCGAT 1 cut(s) 222
BsiSI CCGG 2 cut(s) 153, 179
BsmI GAATGC 1 cut(s) 43
Bsp143I GATC 1 cut(s) 169
BspACI CCGC 3 cut(s) 111, 129, 292
BspDI ATCGAT 1 cut(s) 222
BspFNI CGCG 1 cut(s) 74
BsrFI RCCGGY 2 cut(s) 152, 178
BsrI ACTGG 1 cut(s) 352
BssAI RCCGGY 2 cut(s) 152, 178
BssMI GATC 1 cut(s) 169
BssSI CACGAG 1 cut(s) 173
Bst2BI CACGAG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 105
Bst6I CTCTTC 1 cut(s) 39
BstAPI GCANNNNNTGC 1 cut(s) 38
BstC8I GCNNGC 2 cut(s) 76, 292
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 344
BstFNI CGCG 1 cut(s) 74
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 1 cut(s) 172
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 3 cut(s) 38, 117, 126
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 3 cut(s) 106, 109, 120
Bsu15I ATCGAT 1 cut(s) 222
Bsu36I CCTNAGG 1 cut(s) 63
BsuTUI ATCGAT 1 cut(s) 222
BtsCI GGATG 1 cut(s) 344
Cac8I GCNNGC 2 cut(s) 76, 292
CfoI GCGC 1 cut(s) 74
Cfr10I RCCGGY 2 cut(s) 152, 178
Cfr13I GGNCC 1 cut(s) 155
ClaI ATCGAT 1 cut(s) 222
CviJI RGCY 5 cut(s) 61, 139, 152, 265, 277
CviKI_1 RGCY 5 cut(s) 61, 139, 152, 265, 277
DdeI CTNAG 1 cut(s) 63
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
DriI GACNNNNNGTC 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 39
Eam1105I GACNNNNNGTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 155
Eco81I CCTNAGG 1 cut(s) 63
FaiI YATR 2 cut(s) 198, 206
FauI CCCGC 1 cut(s) 299
Fnu4HI GCNGC 3 cut(s) 95, 98, 109
Fsp4HI GCNGC 3 cut(s) 95, 98, 109
FspBI CTAG 1 cut(s) 140
GlaI GCGC 1 cut(s) 73
GluI GCNGC 3 cut(s) 95, 98, 109
HapII CCGG 2 cut(s) 153, 179
HhaI GCGC 1 cut(s) 74
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HinfI GANTC 2 cut(s) 200, 318
HpaII CCGG 2 cut(s) 153, 179
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 2 cut(s) 55, 254
Hpy188III TCNNGA 2 cut(s) 239, 269
Hpy8I GTNNAC 2 cut(s) 55, 254
Hpy99I CGWCG 2 cut(s) 105, 275
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4V TGCA 2 cut(s) 41, 108
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 117, 126
HpyF3I CTNAG 1 cut(s) 63
HspAI GCGC 1 cut(s) 72
Kzo9I GATC 1 cut(s) 169
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 6 cut(s) 64, 166, 192, 224, 308, 333
Lsp1109I GCAGC 3 cut(s) 106, 109, 120
MaeI CTAG 1 cut(s) 140
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 2 cut(s) 56, 272
MfeI CAATTG 1 cut(s) 210
MluCI AATT 1 cut(s) 210
MlyI GAGTC 2 cut(s) 209, 327
MmeI TCCRAC 1 cut(s) 323
MseI TTAA 2 cut(s) 161, 188
MspA1I CMGCKG 1 cut(s) 111
MspI CCGG 2 cut(s) 153, 179
MunI CAATTG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 43
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 3 cut(s) 38, 117, 126
NdeII GATC 1 cut(s) 169
PctI GAATGC 1 cut(s) 43
PkrI GCNGC 3 cut(s) 96, 99, 110
PleI GAGTC 2 cut(s) 208, 326
PpsI GAGTC 2 cut(s) 208, 326
PspPI GGNCC 1 cut(s) 155
SaqAI TTAA 2 cut(s) 161, 188
SatI GCNGC 3 cut(s) 95, 98, 109
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 1 cut(s) 155
SchI GAGTC 2 cut(s) 209, 327
SetI ASST 4 cut(s) 69, 141, 279, 288
SinI GGWCC 1 cut(s) 155
Sse9I AATT 1 cut(s) 210
SsiI CCGC 3 cut(s) 111, 129, 292
SspI AATATT 1 cut(s) 229
SspMI CTAG 1 cut(s) 140
TaaI ACNGT 1 cut(s) 105
TaqI TCGA 1 cut(s) 222
TasI AATT 1 cut(s) 210
Tru1I TTAA 2 cut(s) 161, 188
Tru9I TTAA 2 cut(s) 161, 188
TseI GCWGC 3 cut(s) 94, 97, 108
TspDTI ATGAA 3 cut(s) 17, 294, 299
VpaK11BI GGWCC 1 cut(s) 155
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.