Rh6CG119000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0025883
Physical Location & Seq
Forward (+)
13904384 .. 13904590
207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG119000.1

Sequence Viewer

Length: 207 bp
ATGGCTGGGCCCTTGGGTTGGCTCTGCTCAGAGGCTGGACGTGGCTCTAGCTTGGTTTCTGTTTTCGTTGCTCTAGGCAGTGATGGATGGGAGTACTCATTTTCGATTCAGAGTCAGGTGTGCGCGAGCAGGGTTGTTTCCAAGCAGCAGCGACGGTGCAGCGGTGTCTGCTCTTTTGGCGGTGTCAAGGTGGAGCCCTCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.16

Weight (kDa)

8.49

Isoelectric Point (pI)

53.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025883)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_7G00204130
rosa_samantha Rh6BG120800 Rh6CG119000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 125
AciI CCGC 2 cut(s) 162, 180
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 18
AjiI CACGTC 1 cut(s) 41
AluBI AGCT 1 cut(s) 51
AluI AGCT 1 cut(s) 51
AlwNI CAGNNNCTG 1 cut(s) 35
AoxI GGCC 1 cut(s) 8
ApaI GGGCCC 1 cut(s) 12
ApeKI GCWGC 3 cut(s) 145, 148, 159
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 2 cut(s) 8, 9
BaeGI GKGCMC 1 cut(s) 12
BanII GRGCYC 2 cut(s) 12, 198
BbvI GCAGC 3 cut(s) 157, 160, 171
BccI CCATC 2 cut(s) 77, 81
BfaI CTAG 2 cut(s) 48, 74
BisI GCNGC 3 cut(s) 146, 149, 160
BlsI GCNGC 3 cut(s) 147, 150, 161
BmcAI AGTACT 1 cut(s) 95
BmgBI CACGTC 1 cut(s) 41
BmgT120I GGNCC 2 cut(s) 8, 9
BmiI GGNNCC 2 cut(s) 10, 195
BsaJI CCNNGG 1 cut(s) 12
Bsc4I CCNNNNNNNGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 42
BseSI GKGCMC 1 cut(s) 12
BseXI GCAGC 3 cut(s) 157, 160, 171
BseYI CCCAGC 1 cut(s) 5
BsgI GTGCAG 1 cut(s) 178
Bsh1236I CGCG 1 cut(s) 125
BshFI GGCC 1 cut(s) 10
BslI CCNNNNNNNGG 1 cut(s) 18
BsnI GGCC 1 cut(s) 10
Bsp120I GGGCCC 1 cut(s) 8
Bsp1286I GDGCHC 2 cut(s) 12, 198
BspACI CCGC 2 cut(s) 162, 180
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 1 cut(s) 41
BspFNI CGCG 1 cut(s) 125
BspLI GGNNCC 2 cut(s) 10, 195
BssECI CCNNGG 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 28
BstF5I GGATG 1 cut(s) 92
BstFNI CGCG 1 cut(s) 125
BstHHI GCGC 1 cut(s) 125
BstMWI GCNNNNNNNGC 2 cut(s) 168, 177
BstSLI GKGCMC 1 cut(s) 12
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 3 cut(s) 157, 160, 171
BsuRI GGCC 1 cut(s) 10
BtrI CACGTC 1 cut(s) 41
BtsCI GGATG 1 cut(s) 92
BtsI GCAGTG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 127
CaiI CAGNNNCTG 1 cut(s) 35
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 2 cut(s) 8, 9
Csp6I GTAC 1 cut(s) 94
CviJI RGCY 7 cut(s) 5, 10, 22, 35, 45, 51, 196
CviKI_1 RGCY 7 cut(s) 5, 10, 22, 35, 45, 51, 196
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 12
Eco24I GRGCYC 2 cut(s) 12, 198
EcoO109I RGGNCCY 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 12
EcoT38I GRGCYC 2 cut(s) 12, 198
ErhI CCWWGG 1 cut(s) 12
Fnu4HI GCNGC 3 cut(s) 146, 149, 160
FokI GGATG 1 cut(s) 99
FriOI GRGCYC 2 cut(s) 12, 198
Fsp4HI GCNGC 3 cut(s) 146, 149, 160
FspBI CTAG 2 cut(s) 48, 74
GlaI GCGC 1 cut(s) 124
GluI GCNGC 3 cut(s) 146, 149, 160
GsaI CCCAGC 1 cut(s) 9
HaeIII GGCC 1 cut(s) 10
HhaI GCGC 1 cut(s) 125
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HinfI GANTC 2 cut(s) 106, 112
Hpy188I TCNGA 2 cut(s) 31, 111
Hpy99I CGWCG 1 cut(s) 156
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4IV ACGT 1 cut(s) 40
HpyCH4V TGCA 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 177
HpyF3I CTNAG 1 cut(s) 28
HpySE526I ACGT 1 cut(s) 40
HspAI GCGC 1 cut(s) 123
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 3 cut(s) 21, 101, 115
Lsp1109I GCAGC 3 cut(s) 157, 160, 171
MaeI CTAG 2 cut(s) 48, 74
MaeII ACGT 1 cut(s) 40
MhlI GDGCHC 2 cut(s) 12, 198
MlyI GAGTC 1 cut(s) 121
MnlI CCTC 1 cut(s) 25
MspA1I CMGCKG 1 cut(s) 162
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 2 cut(s) 168, 177
NlaIV GGNNCC 2 cut(s) 10, 195
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 3 cut(s) 147, 150, 161
PleI GAGTC 1 cut(s) 120
PpsI GAGTC 1 cut(s) 120
PspFI CCCAGC 1 cut(s) 5
PspN4I GGNNCC 2 cut(s) 10, 195
PspOMI GGGCCC 1 cut(s) 8
PspPI GGNCC 2 cut(s) 8, 9
PstNI CAGNNNCTG 1 cut(s) 35
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SatI GCNGC 3 cut(s) 146, 149, 160
Sau96I GGNCC 2 cut(s) 8, 9
ScaI AGTACT 1 cut(s) 95
SchI GAGTC 1 cut(s) 121
SduI GDGCHC 2 cut(s) 12, 198
SetI ASST 4 cut(s) 43, 53, 120, 192
SsiI CCGC 2 cut(s) 162, 180
SspMI CTAG 2 cut(s) 48, 74
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 156
TaiI ACGT 1 cut(s) 43
TaqI TCGA 1 cut(s) 104
TatI WGTACW 1 cut(s) 93
TfiI GAWTC 1 cut(s) 106
TscAI CASTG 1 cut(s) 85
TseI GCWGC 3 cut(s) 145, 148, 159
TspRI CASTG 1 cut(s) 85
XspI CTAG 2 cut(s) 48, 74
ZrmI AGTACT 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.