Rroxscaffold_7G00210270

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0025605
Physical Location & Seq
Reverse (-)
60541685 .. 60549287
7603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00210270.1

Sequence Viewer

Length: 492 bp
ATGGATTACAATTACCCTTCACTAGCTACTGTTGTTTCACCAAAGCAAGCATTTACTATTAAATTTCACAAAACAGTTAAGAACGTTGGCCTTGCAAACTCCACCTACAAGGCCAGAATTTTCACAAACTCCACTCGAGTGGACATCAAGGCTCTGCCTGAAGTTCTTTCTTTCAAGTCTTTGAATGAGGAGAAGCCTTTTGATGTGACCGTTGTTGGAGGAGGATTGTCAGATGGCGCACAACTGGCATGTGTCGGCACTGCTGGTTTGTGTGTGGAATCAGAAAATTGTGAAGTTTCGGAGAAGTTAGAAGACTCGGAGACAAGCATTGATATAGCACATCCAAGACAGGCACATGGTGGCATAGCGCATCCAAGCCTAGGACAAGAAATCCCTTATCTTAACCCATCAATAATTGGGAGGATTAAGGAGTCGGGACCAAGTCTTGGTGGTGGACACGGTGGTGGGGGTGGTGGTGGTGGTGGACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

163

Amino Acids

16.92

Weight (kDa)

6.05

Isoelectric Point (pI)

37.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
fn3_6 PF17766 2 - 73 3.3e-13 Fibronectin type-III domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025605)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006170.1_g000005
rosa_roxburghii Rroxscaffold_7G00210270
rosa_samantha Rh6BG066000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 446
AclI AACGTT 1 cut(s) 84
AcsI RAATTY 2 cut(s) 62, 117
AcuI CTGAAG 1 cut(s) 180
AdeI CACNNNGTG 1 cut(s) 359
AfiI CCNNNNNNNGG 2 cut(s) 380, 446
AgsI TTSAA 2 cut(s) 175, 184
AleI CACNNNNGTG 2 cut(s) 137, 462
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 314
Ama87I CYCGRG 1 cut(s) 135
AoxI GGCC 2 cut(s) 88, 111
ApoI RAATTY 2 cut(s) 62, 117
AspA2I CCTAGG 1 cut(s) 379
AspLEI GCGC 2 cut(s) 239, 370
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 1 cut(s) 30
AvaI CYCGRG 1 cut(s) 135
AvaII GGWCC 1 cut(s) 437
AvrII CCTAGG 1 cut(s) 379
BbsI GAAGAC 1 cut(s) 318
BccI CCATC 2 cut(s) 227, 415
BcoDI GTCTC 1 cut(s) 314
BfaI CTAG 2 cut(s) 23, 380
BlnI CCTAGG 1 cut(s) 379
Bme18I GGWCC 1 cut(s) 437
BmeT110I CYCGRG 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 438
BmsI GCATC 1 cut(s) 379
BpiI GAAGAC 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 379
Bsc4I CCNNNNNNNGG 2 cut(s) 380, 446
Bse1I ACTGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 379
BseGI GGATG 2 cut(s) 340, 370
BseLI CCNNNNNNNGG 2 cut(s) 380, 446
BseNI ACTGG 1 cut(s) 249
BseRI GAGGAG 2 cut(s) 203, 234
BshFI GGCC 2 cut(s) 90, 113
BsiHKCI CYCGRG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 450
BslI CCNNNNNNNGG 2 cut(s) 380, 446
BsmAI GTCTC 1 cut(s) 314
BsmFI GGGAC 1 cut(s) 450
BsnI GGCC 2 cut(s) 90, 113
BsoBI CYCGRG 1 cut(s) 135
BspANI GGCC 2 cut(s) 90, 113
BspLI GGNNCC 1 cut(s) 438
BsrI ACTGG 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 379
BssT1I CCWWGG 1 cut(s) 379
Bst4CI ACNGT 4 cut(s) 31, 76, 211, 461
BstC8I GCNNGC 1 cut(s) 48
BstF5I GGATG 2 cut(s) 340, 370
BstHHI GCGC 2 cut(s) 239, 370
BstMAI GTCTC 1 cut(s) 314
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNSI RCATGY 1 cut(s) 252
BstV2I GAAGAC 1 cut(s) 318
BstXI CCANNNNNNTGG 1 cut(s) 139
BsuRI GGCC 2 cut(s) 90, 113
BtsCI GGATG 2 cut(s) 340, 370
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 48
CfoI GCGC 2 cut(s) 239, 370
Cfr13I GGNCC 1 cut(s) 437
CviAII CATG 2 cut(s) 249, 356
CviJI RGCY 6 cut(s) 26, 90, 113, 152, 196, 378
CviKI_1 RGCY 6 cut(s) 26, 90, 113, 152, 196, 378
DraIII CACNNNGTG 1 cut(s) 359
Eco130I CCWWGG 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 437
Eco57I CTGAAG 1 cut(s) 180
Eco88I CYCGRG 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 379
FaeI CATG 2 cut(s) 252, 359
FaiI YATR 4 cut(s) 250, 335, 357, 365
FaqI GGGAC 1 cut(s) 450
FatI CATG 2 cut(s) 248, 355
FokI GGATG 2 cut(s) 327, 357
FspBI CTAG 2 cut(s) 23, 380
GlaI GCGC 2 cut(s) 238, 369
HaeIII GGCC 2 cut(s) 90, 113
HhaI GCGC 2 cut(s) 239, 370
Hin1II CATG 2 cut(s) 252, 359
Hin6I GCGC 2 cut(s) 237, 368
HinP1I GCGC 2 cut(s) 237, 368
HinfI GANTC 3 cut(s) 278, 314, 431
HphI GGTGA 1 cut(s) 30
Hpy166II GTNNAC 3 cut(s) 142, 455, 485
Hpy188I TCNGA 4 cut(s) 232, 283, 301, 319
Hpy188III TCNNGA 1 cut(s) 435
Hpy8I GTNNAC 3 cut(s) 142, 455, 485
HpyAV CCTTC 1 cut(s) 27
HpyCH4III ACNGT 4 cut(s) 31, 76, 211, 461
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 2 cut(s) 252, 359
HspAI GCGC 2 cut(s) 237, 368
LpnPI CCDG 5 cut(s) 127, 171, 230, 249, 335
LweI GCATC 1 cut(s) 379
MaeI CTAG 2 cut(s) 23, 380
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 205
MboII GAAGA 1 cut(s) 323
MluCI AATT 5 cut(s) 10, 62, 117, 286, 414
MlyI GAGTC 2 cut(s) 308, 440
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 4 cut(s) 181, 212, 215, 414
MseI TTAA 5 cut(s) 60, 78, 402, 426, 490
MslI CAYNNNNRTG 2 cut(s) 137, 462
MwoI GCNNNNNNNGC 1 cut(s) 245
NlaIII CATG 2 cut(s) 252, 359
NlaIV GGNNCC 1 cut(s) 438
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 1 cut(s) 252
OliI CACNNNNGTG 2 cut(s) 137, 462
PaeR7I CTCGAG 1 cut(s) 135
PfeI GAWTC 1 cut(s) 278
PflFI GACNNNGTC 1 cut(s) 441
PflMI CCANNNNNTGG 1 cut(s) 446
PleI GAGTC 2 cut(s) 308, 439
PpsI GAGTC 2 cut(s) 308, 439
Psp1406I AACGTT 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 1 cut(s) 437
PspXI VCTCGAGB 1 cut(s) 135
PsyI GACNNNGTC 1 cut(s) 441
RseI CAYNNNNRTG 2 cut(s) 137, 462
SaqAI TTAA 5 cut(s) 60, 78, 402, 426, 490
Sau96I GGNCC 1 cut(s) 437
SchI GAGTC 2 cut(s) 308, 440
SetI ASST 3 cut(s) 28, 87, 107
SfaNI GCATC 1 cut(s) 379
Sfr274I CTCGAG 1 cut(s) 135
SinI GGWCC 1 cut(s) 437
SlaI CTCGAG 1 cut(s) 135
SmiMI CAYNNNNRTG 2 cut(s) 137, 462
SmlI CTYRAG 1 cut(s) 135
SmoI CTYRAG 1 cut(s) 135
Sse9I AATT 5 cut(s) 10, 62, 117, 286, 414
SspMI CTAG 2 cut(s) 23, 380
StyI CCWWGG 1 cut(s) 379
TaaI ACNGT 4 cut(s) 31, 76, 211, 461
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 136
TasI AATT 5 cut(s) 10, 62, 117, 286, 414
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 5 cut(s) 60, 78, 402, 426, 490
Tru9I TTAA 5 cut(s) 60, 78, 402, 426, 490
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 205
TspRI CASTG 1 cut(s) 265
Tth111I GACNNNGTC 1 cut(s) 441
Van91I CCANNNNNTGG 1 cut(s) 446
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 2 cut(s) 62, 117
XceI RCATGY 1 cut(s) 252
XhoI CTCGAG 1 cut(s) 135
XmaJI CCTAGG 1 cut(s) 379
XspI CTAG 2 cut(s) 23, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.