Rorug01G0096600

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0010765
Physical Location & Seq
Reverse (-)
16016831 .. 16017127
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0096600.1

Sequence Viewer

Length: 216 bp
ATGCCCGGTTCTTCCTATGGCAGGCTCTTTCCTAAGAAGTCTATCAACTTTTTTCGCTCTTCTTACTCTCTGCACTGGATCTCTAAGATCGATGAAAATCCCAGCTTTGATCATATTGGTGGAATGCCTGCAGCTTCCAAAAGGTTTGGTAACAAAAGGAGGATTCAACGAGGGAAACATATGCACAGCCAAGACAAGCCCACCATCTGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
ko04910 map04910
Pfam Domains
Protein Families
Exo70

Protein Analysis

71

Amino Acids

8.17

Weight (kDa)

10.5

Isoelectric Point (pI)

73.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 1 - 33 2.7e-11 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010765)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03540 AT5G03540 AT5G03540
fragaria_vesca FvH4_7g05390 FvH4_7g05390 FvH4_7g05390
malus_domestica MD02G1258800.v1.1
prunus_persica Prupe.2G071900_v2.0.a1
pyrus_communis pycom02g22000 pycom07g04750
rosa_chinensis RchiOBHm_Chr1g0331841
rosa_laevigata RLG00000029709
rosa_multiflora Rmu_sc0000523.1_g000006
rosa_roxburghii Rroxscaffold_4G00318640
rosa_rugosa Rorug01G0096600
rosa_samantha Rh1AG120800 Rh1BG092300 Rh1CG115600 Rh1DG126700
rosa_wichuraiana Rw1G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 21
AgsI TTSAA 1 cut(s) 167
AluBI AGCT 2 cut(s) 105, 134
AluI AGCT 2 cut(s) 105, 134
AlwI GGATC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 131
AsuC2I CCSGG 1 cut(s) 6
BbvI GCAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 212
BclI TGATCA 1 cut(s) 109
BcnI CCSGG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 129
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 6
Bsa29I ATCGAT 1 cut(s) 90
BsaBI GATNNNNATC 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 80
Bse8I GATNNNNATC 1 cut(s) 96
BseCI ATCGAT 1 cut(s) 90
BseJI GATNNNNATC 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 80
BseXI GCAGC 1 cut(s) 143
BseYI CCCAGC 1 cut(s) 101
BsgI GTGCAG 1 cut(s) 56
BshVI ATCGAT 1 cut(s) 90
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 21
BsmI GAATGC 1 cut(s) 129
Bsp143I GATC 3 cut(s) 78, 87, 109
BspDI ATCGAT 1 cut(s) 90
BspMAI CTGCAG 1 cut(s) 133
BspPI GGATC 1 cut(s) 86
BspQI GCTCTTC 1 cut(s) 64
BsrI ACTGG 1 cut(s) 80
BssMI GATC 3 cut(s) 78, 87, 109
Bst6I CTCTTC 1 cut(s) 64
BstC8I GCNNGC 2 cut(s) 23, 129
BstDEI CTNAG 2 cut(s) 33, 84
BstENI CCTNNNNNAGG 1 cut(s) 19
BstKTI GATC 3 cut(s) 81, 90, 112
BstMBI GATC 3 cut(s) 78, 87, 109
BstSCI CCNGG 1 cut(s) 4
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
Bsu15I ATCGAT 1 cut(s) 90
BsuTUI ATCGAT 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 23, 129
ClaI ATCGAT 1 cut(s) 90
CviJI RGCY 5 cut(s) 25, 105, 134, 189, 199
CviKI_1 RGCY 5 cut(s) 25, 105, 134, 189, 199
DdeI CTNAG 2 cut(s) 33, 84
DpnI GATC 3 cut(s) 80, 89, 111
DpnII GATC 3 cut(s) 78, 87, 109
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
EcoNI CCTNNNNNAGG 1 cut(s) 19
FaiI YATR 4 cut(s) 18, 114, 180, 182
FauNDI CATATG 1 cut(s) 180
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 132
GsaI CCCAGC 1 cut(s) 105
HapII CCGG 1 cut(s) 6
HinfI GANTC 1 cut(s) 163
HpaII CCGG 1 cut(s) 6
HpyCH4V TGCA 3 cut(s) 73, 131, 184
HpyF3I CTNAG 2 cut(s) 33, 84
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 3 cut(s) 78, 87, 109
LguI GCTCTTC 1 cut(s) 64
LpnPI CCDG 5 cut(s) 7, 19, 61, 115, 141
Lsp1109I GCAGC 1 cut(s) 143
MaeIII GTNAC 1 cut(s) 149
MalI GATC 3 cut(s) 80, 89, 111
MboI GATC 3 cut(s) 78, 87, 109
MboII GAAGA 2 cut(s) 3, 51
MflI RGATCY 1 cut(s) 78
MnlI CCTC 2 cut(s) 153, 164
MseI TTAA 1 cut(s) 214
MslI CAYNNNNRTG 1 cut(s) 117
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 129
NciI CCSGG 1 cut(s) 6
NdeI CATATG 1 cut(s) 180
NdeII GATC 3 cut(s) 78, 87, 109
PciSI GCTCTTC 1 cut(s) 64
PctI GAATGC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 163
PkrI GCNGC 1 cut(s) 133
PspFI CCCAGC 1 cut(s) 101
PstI CTGCAG 1 cut(s) 133
PsuI RGATCY 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 117
SapI GCTCTTC 1 cut(s) 64
SaqAI TTAA 1 cut(s) 214
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 3 cut(s) 78, 87, 109
ScrFI CCNGG 1 cut(s) 6
SetI ASST 3 cut(s) 107, 136, 146
SfcI CTRYAG 1 cut(s) 129
SgeI CNNG 9 cut(s) 17, 18, 34, 88, 114, 140, 182, 203, 208
SmiMI CAYNNNNRTG 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 4
TaqI TCGA 1 cut(s) 90
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 1 cut(s) 214
Tru9I TTAA 1 cut(s) 214
TscAI CASTG 1 cut(s) 80
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 1 cut(s) 108
TspRI CASTG 1 cut(s) 80
XagI CCTNNNNNAGG 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.