Rh1DG126700

exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0010765
Physical Location & Seq
Forward (+)
26441314 .. 26449444
8131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG126700.1

Sequence Viewer

Length: 1503 bp
ATGGTTATGTGCAAACCTGTGGAGCCTGAACGCCTCTTTGATTGTCTCCCAAACTCATTGAGGCCATCCTCAGGATCTCCTGGTAACCAGGGTGATTTGAATGGCAAGAATCCTTCTTCAAATAACCATCATGAACACCACAATAGTAACTTAGAAAATGCTGTTTACACACCTCCTACCCTGATACCTCCCAGGGTTCTTCCACTGTTACATGATTTAGCTCAGCAAATGTTTCAAGCTGGTCATCAACAGCAGTTGCTATTAATTTATAGGGATACCCGCTCTTCAGTCTTAGAAGAAAGCCTCCACAAATTGGGGGTTGAAAAACTGAGCAAGGACGACGTTCAGAAAATGCAATGGGAGATTTTGGAAGCCAAGATTGGAAACTGGATTCATTACATGCGTATAGCTGTGAAATTACTGTTTGCTGGAGAACGGAAAGTTTGTGATCAAATGTTTGAAGGCTTCGATTCTCTTGGCGACCAATGTTTTGCGGAAGTTACTAGAAGTAGTGTCTTAGTTCTACTTAGTTTTGGGGAGGCAATTGCGAATAGCAAGAGATCTCCAGAAAAGTTGTTTGTGCTTTTAGATATGTACGAGATAATGCGAGAGCTTCACTCAGAGATTGAAACAATATTCGTAGGCAAAGCTTGTGCTGAAATTAGAGAATCGGCGTCAAGTCTGACAAAACGGCTTGCCCAGACTGCGAAAAAGACCTTTGGTGATTTTGAGGAAGCCGTTGAAAGAGATGCAACAAAAACTGCTGTATCAGATGGCACCGTCCATCCCTTGACAAGCTATGTGATCAACTATGTGAAATTTCTTTTTGATTATCAATCAACGTTGAAGCAACTTTTTAAGGAATTTGAAAATGGAGATGAAGGTGGTTCACAATTAGCATCTGTCACAATGCAAATAATGCAGGCTCTTCAAACTAATTTGGATGGAAAATCTAAGCAGTATAGAGATCCAGCCTTAACACACCTGTTTCTCATGAACAATATACACTATATGGTCAGATCTGTGCGCAGATCTGAAGCCAAGGATTTGTTAGGGGATGACTGGGTGCAGAGACACCGTAGGATTGTGCAGCAGCATGCAAATCAATACAAAAGAAATGGTTGGGGAAAGATTCTGCAGTGTCTAACCATTCAAGGCTTGAGCTCATCTGGAGGCAGCTCAGTAGCTGGTGATGGAGGAAACAGTAGTGGAGTTTCAAGAGCTATTGTGAAAGATAGGTTCAAGACATTTAATATGCAATTTGAGGAACTCCATCAAAAACAATCTCAGTGGACAGTTCCTGATACTGAGTTGCGAGAATCACTGAGACTTGCAGTTGCTGAAGTCTTACTGCCCGCCTACAGATCTTTCATCAAACGTTATGGGCCTTTAGTTGAGAATGGAAAGAACCCCCAAAAGTACATCAGGTACACGGCGGAGGATCTCGAACGAATGCTGGGTGAATTCTTTGAGGGTAAGAACGTGAATGAACCCAAGCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
ko04910 map04910
Pfam Domains
Protein Families
Exo70

Protein Analysis

500

Amino Acids

56.83

Weight (kDa)

7.25

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo70_C PF03081 129 - 487 6.3e-135 Exo70 exocyst complex subunit C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010765)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03540 AT5G03540 AT5G03540
fragaria_vesca FvH4_7g05390 FvH4_7g05390 FvH4_7g05390
malus_domestica MD02G1258800.v1.1
prunus_persica Prupe.2G071900_v2.0.a1
pyrus_communis pycom02g22000 pycom07g04750
rosa_chinensis RchiOBHm_Chr1g0331841
rosa_laevigata RLG00000029709
rosa_multiflora Rmu_sc0000523.1_g000006
rosa_roxburghii Rroxscaffold_4G00318640
rosa_rugosa Rorug01G0096600
rosa_samantha Rh1AG120800 Rh1BG092300 Rh1CG115600 Rh1DG126700
rosa_wichuraiana Rw1G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1028
AccB1I GGYRCC 1 cut(s) 776
AccB7I CCANNNNNTGG 1 cut(s) 313
AccBSI CCGCTC 1 cut(s) 282
AciI CCGC 5 cut(s) 280, 494, 1356, 1436, 1498
AclI AACGTT 2 cut(s) 842, 1378
AclWI GGATC 3 cut(s) 82, 962, 1449
AcsI RAATTY 3 cut(s) 818, 863, 1463
AcuI CTGAAG 3 cut(s) 270, 1056, 1362
AcyI GRCGYC 1 cut(s) 674
AfaI GTAC 3 cut(s) 596, 1421, 1430
AfiI CCNNNNNNNGG 2 cut(s) 71, 313
AjnI CCWGG 3 cut(s) 79, 87, 191
AjuI GAANNNNNNNTTGG 2 cut(s) 363, 395
Alw21I GWGCWC 1 cut(s) 1166
Alw26I GTCTC 3 cut(s) 50, 1066, 1321
AlwI GGATC 3 cut(s) 82, 962, 1449
AlwNI CAGNNNCTG 3 cut(s) 1187, 1301, 1340
AoxI GGCC 2 cut(s) 62, 1385
ApeKI GCWGC 3 cut(s) 1090, 1093, 1176
ApoI RAATTY 3 cut(s) 818, 863, 1463
ArsI GACNNNNNNTTYG 2 cut(s) 473, 505
AseI ATTAAT 1 cut(s) 263
AspLEI GCGC 1 cut(s) 1029
AspS9I GGNCC 1 cut(s) 1385
AsuHPI GGTGA 4 cut(s) 104, 734, 1202, 1472
AxyI CCTNAGG 1 cut(s) 70
BaeI ACNNNNGTAYC 2 cut(s) 750, 783
BanI GGYRCC 1 cut(s) 776
BanII GRGCYC 1 cut(s) 1166
Bbv12I GWGCWC 1 cut(s) 1166
BbvI GCAGC 3 cut(s) 1102, 1105, 1188
BccI CCATC 7 cut(s) 73, 135, 767, 792, 938, 1187, 1281
BceAI ACGGC 3 cut(s) 707, 722, 1449
BciT130I CCWGG 3 cut(s) 81, 89, 193
BciVI GTATCC 1 cut(s) 268
BclI TGATCA 2 cut(s) 448, 804
BcoDI GTCTC 3 cut(s) 50, 1066, 1321
BfaI CTAG 1 cut(s) 504
BfmI CTRYAG 2 cut(s) 1136, 1360
BfuI GTATCC 1 cut(s) 268
BglII AGATCT 4 cut(s) 560, 1019, 1031, 1364
BisI GCNGC 3 cut(s) 1091, 1094, 1177
BlpI GCTNAGC 1 cut(s) 222
BlsI GCNGC 3 cut(s) 1092, 1095, 1178
Bme1390I CCNGG 3 cut(s) 81, 89, 193
BmgT120I GGNCC 1 cut(s) 1385
BmiI GGNNCC 2 cut(s) 24, 778
BmrFI CCNGG 3 cut(s) 81, 89, 193
BmrI ACTGGG 1 cut(s) 1072
BmsI GCATC 2 cut(s) 739, 908
BmuI ACTGGG 1 cut(s) 1072
BplI GAGNNNNNCTC 2 cut(s) 602, 634
BpmI CTGGAG 3 cut(s) 450, 549, 1191
Bpu1102I GCTNAGC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 1180
BsaHI GRCGYC 1 cut(s) 674
BsaJI CCNNGG 4 cut(s) 88, 191, 192, 1041
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 313
Bse1I ACTGG 2 cut(s) 392, 1067
Bse21I CCTNAGG 1 cut(s) 70
Bse3DI GCAATG 1 cut(s) 362
BseBI CCWGG 3 cut(s) 81, 89, 193
BseDI CCNNGG 4 cut(s) 88, 191, 192, 1041
BseGI GGATG 4 cut(s) 65, 784, 949, 1063
BseLI CCNNNNNNNGG 2 cut(s) 71, 313
BseMI GCAATG 1 cut(s) 362
BseMII CTCAG 8 cut(s) 84, 236, 320, 633, 1194, 1299, 1301, 1316
BseNI ACTGG 2 cut(s) 392, 1067
BseXI GCAGC 3 cut(s) 1102, 1105, 1188
BseYI CCCAGC 1 cut(s) 1456
BsgI GTGCAG 2 cut(s) 1088, 1109
BshFI GGCC 2 cut(s) 64, 1387
BshNI GGYRCC 1 cut(s) 776
BsiHKAI GWGCWC 1 cut(s) 1166
BslI CCNNNNNNNGG 2 cut(s) 71, 313
BsmAI GTCTC 3 cut(s) 50, 1066, 1321
BsmI GAATGC 1 cut(s) 1458
BsnI GGCC 2 cut(s) 64, 1387
Bsp1286I GDGCHC 1 cut(s) 1166
Bsp143I GATC 9 cut(s) 74, 448, 560, 804, 967, 1019, 1031, 1364, 1441
Bsp1720I GCTNAGC 1 cut(s) 222
BspACI CCGC 5 cut(s) 280, 494, 1356, 1436, 1498
BspANI GGCC 2 cut(s) 64, 1387
BspCNI CTCAG 8 cut(s) 83, 235, 321, 632, 1193, 1300, 1300, 1317
BspHI TCATGA 2 cut(s) 130, 993
BspLI GGNNCC 2 cut(s) 24, 778
BspMAI CTGCAG 1 cut(s) 1140
BspPI GGATC 3 cut(s) 82, 962, 1449
BspQI GCTCTTC 2 cut(s) 289, 933
BspT107I GGYRCC 1 cut(s) 776
BsrBI CCGCTC 1 cut(s) 282
BsrDI GCAATG 1 cut(s) 362
BsrI ACTGG 2 cut(s) 392, 1067
BssECI CCNNGG 4 cut(s) 88, 191, 192, 1041
BssMI GATC 9 cut(s) 74, 448, 560, 804, 967, 1019, 1031, 1364, 1441
BssNI GRCGYC 1 cut(s) 674
BssT1I CCWWGG 1 cut(s) 1041
Bst2UI CCWGG 3 cut(s) 81, 89, 193
Bst4CI ACNGT 6 cut(s) 207, 423, 781, 1079, 1205, 1297
Bst6I CTCTTC 2 cut(s) 289, 933
BstACI GRCGYC 1 cut(s) 674
BstAPI GCANNNNNTGC 1 cut(s) 919
BstC8I GCNNGC 4 cut(s) 696, 924, 1098, 1356
BstEII GGTNACC 1 cut(s) 83
BstF5I GGATG 4 cut(s) 65, 784, 949, 1063
BstHHI GCGC 1 cut(s) 1029
BstKTI GATC 9 cut(s) 77, 451, 563, 807, 970, 1022, 1034, 1367, 1444
BstMAI GTCTC 3 cut(s) 50, 1066, 1321
BstMBI GATC 9 cut(s) 74, 448, 560, 804, 967, 1019, 1031, 1364, 1441
BstMWI GCNNNNNNNGC 2 cut(s) 704, 919
BstNI CCWGG 3 cut(s) 81, 89, 193
BstNSI RCATGY 2 cut(s) 403, 1100
BstPI GGTNACC 1 cut(s) 83
BstSCI CCNGG 3 cut(s) 79, 87, 191
BstSFI CTRYAG 2 cut(s) 1136, 1360
BstV1I GCAGC 3 cut(s) 1102, 1105, 1188
BstX2I RGATCY 7 cut(s) 74, 560, 967, 1019, 1031, 1364, 1441
BstYI RGATCY 7 cut(s) 74, 560, 967, 1019, 1031, 1364, 1441
Bsu36I CCTNAGG 1 cut(s) 70
BsuI GTATCC 1 cut(s) 268
BsuRI GGCC 2 cut(s) 64, 1387
BtsCI GGATG 4 cut(s) 65, 784, 949, 1063
BtsI GCAGTG 1 cut(s) 1145
BtsIMutI CAGTG 4 cut(s) 203, 1145, 1295, 1322
Cac8I GCNNGC 4 cut(s) 696, 924, 1098, 1356
CaiI CAGNNNCTG 3 cut(s) 1187, 1301, 1340
CciI TCATGA 2 cut(s) 130, 993
CfoI GCGC 1 cut(s) 1029
Cfr13I GGNCC 1 cut(s) 1385
CseI GACGC 1 cut(s) 663
Csp6I GTAC 3 cut(s) 595, 1420, 1429
CspCI CAANNNNNGTGG 2 cut(s) 1271, 1306
CviAII CATG 5 cut(s) 131, 212, 400, 994, 1097
CviQI GTAC 3 cut(s) 595, 1420, 1429
DpnI GATC 9 cut(s) 76, 450, 562, 806, 969, 1021, 1033, 1366, 1443
DpnII GATC 9 cut(s) 74, 448, 560, 804, 967, 1019, 1031, 1364, 1441
Eam1104I CTCTTC 2 cut(s) 289, 933
EarI CTCTTC 2 cut(s) 289, 933
EciI GGCGGA 1 cut(s) 1451
Ecl136II GAGCTC 1 cut(s) 1164
Eco130I CCWWGG 1 cut(s) 1041
Eco24I GRGCYC 1 cut(s) 1166
Eco53kI GAGCTC 1 cut(s) 1164
Eco57I CTGAAG 3 cut(s) 270, 1056, 1362
Eco81I CCTNAGG 1 cut(s) 70
Eco91I GGTNACC 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 1164
EcoO65I GGTNACC 1 cut(s) 83
EcoRI GAATTC 1 cut(s) 1463
EcoRII CCWGG 3 cut(s) 79, 87, 191
EcoT14I CCWWGG 1 cut(s) 1041
EcoT38I GRGCYC 1 cut(s) 1166
ErhI CCWWGG 1 cut(s) 1041
FaeI CATG 5 cut(s) 134, 215, 403, 997, 1100
FatI CATG 5 cut(s) 130, 211, 399, 993, 1096
FauI CCCGC 2 cut(s) 287, 1363
FbaI TGATCA 2 cut(s) 448, 804
Fnu4HI GCNGC 3 cut(s) 1091, 1094, 1177
FokI GGATG 4 cut(s) 52, 771, 956, 1070
FriOI GRGCYC 1 cut(s) 1166
Fsp4HI GCNGC 3 cut(s) 1091, 1094, 1177
FspBI CTAG 1 cut(s) 504
FspI TGCGCA 1 cut(s) 1028
GlaI GCGC 1 cut(s) 1028
GluI GCNGC 3 cut(s) 1091, 1094, 1177
GsaI CCCAGC 1 cut(s) 1460
GsuI CTGGAG 3 cut(s) 450, 549, 1191
HaeIII GGCC 2 cut(s) 64, 1387
HgaI GACGC 1 cut(s) 663
HhaI GCGC 1 cut(s) 1029
Hin1I GRCGYC 1 cut(s) 674
Hin1II CATG 5 cut(s) 134, 215, 403, 997, 1100
Hin6I GCGC 1 cut(s) 1027
HinP1I GCGC 1 cut(s) 1027
HindIII AAGCTT 1 cut(s) 648
HinfI GANTC 6 cut(s) 109, 391, 470, 668, 1132, 1319
HphI GGTGA 4 cut(s) 104, 734, 1202, 1472
Hpy166II GTNNAC 4 cut(s) 166, 890, 1293, 1431
Hpy188I TCNGA 6 cut(s) 348, 622, 684, 772, 1019, 1036
Hpy188III TCNNGA 9 cut(s) 72, 131, 566, 994, 1170, 1218, 1243, 1301, 1445
Hpy8I GTNNAC 4 cut(s) 166, 890, 1293, 1431
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 3 cut(s) 123, 455, 875
HpyCH4III ACNGT 6 cut(s) 207, 423, 781, 1079, 1205, 1297
HpyCH4IV ACGT 4 cut(s) 342, 842, 1378, 1482
HpyF10VI GCNNNNNNNGC 2 cut(s) 704, 919
HpySE526I ACGT 4 cut(s) 342, 842, 1378, 1482
Hsp92I GRCGYC 1 cut(s) 674
Hsp92II CATG 5 cut(s) 134, 215, 403, 997, 1100
HspAI GCGC 1 cut(s) 1027
Ksp22I TGATCA 2 cut(s) 448, 804
Kzo9I GATC 9 cut(s) 74, 448, 560, 804, 967, 1019, 1031, 1364, 1441
LguI GCTCTTC 2 cut(s) 289, 933
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 3 cut(s) 1102, 1105, 1188
LweI GCATC 2 cut(s) 739, 908
MaeI CTAG 1 cut(s) 504
MaeII ACGT 4 cut(s) 342, 842, 1378, 1482
MaeIII GTNAC 5 cut(s) 83, 146, 207, 499, 904
MalI GATC 9 cut(s) 76, 450, 562, 806, 969, 1021, 1033, 1366, 1443
MbiI CCGCTC 1 cut(s) 282
MboI GATC 9 cut(s) 74, 448, 560, 804, 967, 1019, 1031, 1364, 1441
MboII GAAGA 5 cut(s) 108, 191, 276, 308, 920
MfeI CAATTG 1 cut(s) 543
MflI RGATCY 7 cut(s) 74, 560, 967, 1019, 1031, 1364, 1441
MhlI GDGCHC 1 cut(s) 1166
MseI TTAA 4 cut(s) 263, 858, 977, 1251
MspR9I CCNGG 3 cut(s) 81, 89, 193
MunI CAATTG 1 cut(s) 543
Mva1269I GAATGC 1 cut(s) 1458
MvaI CCWGG 3 cut(s) 81, 89, 193
MwoI GCNNNNNNNGC 2 cut(s) 704, 919
NdeII GATC 9 cut(s) 74, 448, 560, 804, 967, 1019, 1031, 1364, 1441
NlaIII CATG 5 cut(s) 134, 215, 403, 997, 1100
NlaIV GGNNCC 2 cut(s) 24, 778
NmuCI GTSAC 1 cut(s) 904
NsbI TGCGCA 1 cut(s) 1028
NspI RCATGY 2 cut(s) 403, 1100
PaeI GCATGC 1 cut(s) 1100
PagI TCATGA 2 cut(s) 130, 993
PasI CCCWGGG 1 cut(s) 192
PciSI GCTCTTC 2 cut(s) 289, 933
PctI GAATGC 1 cut(s) 1458
PfeI GAWTC 6 cut(s) 109, 391, 470, 668, 1132, 1319
PflMI CCANNNNNTGG 1 cut(s) 313
PkrI GCNGC 3 cut(s) 1092, 1095, 1178
PshBI ATTAAT 1 cut(s) 263
Psp124BI GAGCTC 1 cut(s) 1166
Psp1406I AACGTT 2 cut(s) 842, 1378
Psp6I CCWGG 3 cut(s) 79, 87, 191
PspEI GGTNACC 1 cut(s) 83
PspFI CCCAGC 1 cut(s) 1456
PspGI CCWGG 3 cut(s) 79, 87, 191
PspN4I GGNNCC 2 cut(s) 24, 778
PspPI GGNCC 1 cut(s) 1385
PstI CTGCAG 1 cut(s) 1140
PstNI CAGNNNCTG 3 cut(s) 1187, 1301, 1340
PsuI RGATCY 7 cut(s) 74, 560, 967, 1019, 1031, 1364, 1441
RsaI GTAC 3 cut(s) 596, 1421, 1430
RsaNI GTAC 3 cut(s) 595, 1420, 1429
SacI GAGCTC 1 cut(s) 1166
SapI GCTCTTC 2 cut(s) 289, 933
SaqAI TTAA 4 cut(s) 263, 858, 977, 1251
SatI GCNGC 3 cut(s) 1091, 1094, 1177
Sau3AI GATC 9 cut(s) 74, 448, 560, 804, 967, 1019, 1031, 1364, 1441
Sau96I GGNCC 1 cut(s) 1385
ScrFI CCNGG 3 cut(s) 81, 89, 193
SduI GDGCHC 1 cut(s) 1166
SfaNI GCATC 2 cut(s) 739, 908
SfcI CTRYAG 2 cut(s) 1136, 1360
SmlI CTYRAG 1 cut(s) 1159
SmoI CTYRAG 1 cut(s) 1159
SphI GCATGC 1 cut(s) 1100
SsiI CCGC 5 cut(s) 280, 494, 1356, 1436, 1498
SspI AATATT 1 cut(s) 636
SspMI CTAG 1 cut(s) 504
SstI GAGCTC 1 cut(s) 1166
StyD4I CCNGG 3 cut(s) 79, 87, 191
StyI CCWWGG 1 cut(s) 1041
TaaI ACNGT 6 cut(s) 207, 423, 781, 1079, 1205, 1297
TaiI ACGT 4 cut(s) 345, 845, 1381, 1485
TaqI TCGA 2 cut(s) 468, 1446
TatI WGTACW 1 cut(s) 1419
TfiI GAWTC 6 cut(s) 109, 391, 470, 668, 1132, 1319
Tru1I TTAA 4 cut(s) 263, 858, 977, 1251
Tru9I TTAA 4 cut(s) 263, 858, 977, 1251
TscAI CASTG 4 cut(s) 210, 1145, 1295, 1329
TseFI GTSAC 1 cut(s) 904
TseI GCWGC 3 cut(s) 1090, 1093, 1176
Tsp45I GTSAC 1 cut(s) 904
TspDTI ATGAA 6 cut(s) 147, 383, 894, 1010, 1360, 1503
TspGWI ACGGA 1 cut(s) 451
TspRI CASTG 4 cut(s) 210, 1145, 1295, 1329
Van91I CCANNNNNTGG 1 cut(s) 313
VspI ATTAAT 1 cut(s) 263
XapI RAATTY 3 cut(s) 818, 863, 1463
XceI RCATGY 2 cut(s) 403, 1100
XspI CTAG 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.