Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008264

Physical Location & Seq

Genomic Coordinates Forward (+)

31353518 .. 31362456

Gene Structure 8939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0219600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3648 bp

ATGGCTGTTGTAAGAGCAGCTTTTCATAAAACTTCCGCTTCCAATACTACATCTCCTTTTCCCAGTAGGTATCATGTGTTCTTGAGTTTTAGAGGCCAGGACACTTGCAAAACTTTTACCGACCACCTCTATACAGCCTTCAAGGACCAAGGCTTTCGCACCTTTCTAGATGACGATGAACTCGAGAGAGGAGAAGATATTAACCCGGGACTTGGGAATGCCATCCGAGACTCGCGAAGTTCTGTCATTGTGTTCTCAAAAGATTACGCTTCTTCCCGGTGGTGCCTTAACGAGCTGGTGATGATCCTTGAACGCAAGAGGACCTCAGATCATGTTGTTTTACCAGTCTTCTACAACGTGGAACCATCCGACGTAAGGAAGCAGACGGGAAGTTTTGGGGAATCATTTGCTAGACACCAAAAGACTCAACCGCCACACAAGGTGCAGGAATGGAGGGACGCGCTTAAAAAAGTTGCAGATCTAGCTGGGATGGTTTTACAGAAACAAACGGATGGGTATGAGGTAACGTTTATTAAAAAAGTTGTTAAAGTGATCAGAGACAAGATAAGTCGCACACCATTAAGCGTTGCCCATAACATAATTGGAATGGAGTCTCGAATCGGTCATGTTGGCATGCTTTTAATCTATGGCATGTCTGGAATTGGGAAGACAACCATTGCAAAATCTGTATATAATTTAAACTTTCTTGGGTTTGAAAGAAGCAGCTTCATTGAAAGTATCAGAAAAATTTCAGAAGAGCCCAAGGGGTTAGTTGGGATACAATTACAGCTCATTTCCGATATTATGAATGAAAGAGAAATGAAAATACACAGCGTTAGTGAGGGTACCATCAACGTTAGAGATGTCATAAGCTCTAAAAGGATTCTTCTTGTTCTTGATGATGTGGATCATATGGATCAATTAGATGCAGTTCTTAGAATGAAAGATCAGTTTCATCCAGGAAGTAAAATCATCATAACAACTAGGCACAAAAGCTTGTTAAAGGCTTACCACGCTGCTAAGTTGCATTATGTTGAAACTTTGAGTTACAATGAATCATTAGAATTGTTCAGTTGGCATGCTTTTGGACAAGACCATCCCGTTGAAGGTTATATGGAACTTTCAGAAATGGTGGTACGTCATGCTGGAGGACTTCCGTTAGCTCTTCAAGTTTTGGGTGCTTCTTTGTCAGGGAGAACTATAGAAGTTTGGGAAAGTGCATTAGAAAAATTGCAAGCTATTCCCCATACAGAAATCATGCAGAAACTCAGAATAAGCTATGATTCTTTACAAGATGACCATGATCAAGAATTACTCCTCCATATTGCTTGTTTCTTAAGTGGAAAAGACAAAGATGTCATTGTGAGGATACTAAATGGTTGTGATTTCTACACAATTGTTGGCATTCAAAATCTCATTGAAAGATGTTTAGTAACAATTGACAAACACAACAAGGTGCAGATGCATGACATGATTCGTGACCTGGGAAGAGAAATTGTTCGTCGAGAATCAAAAGAGCCCGAGAAACGTAGCAGACTTTGGCATCACAAGGATTCTGTCAGAGTGTTGAGAGAAAAGAATGGTACACAAACGATTGAGGGTCTTGTCCTGAACATGCATATGCACACTGCAGACACTTCATCAAAGATCCTCTTCGAAACCCATGCCTTCACAAGGATGTACAAACTAAGACTACTCCATCTTATTCGTGTACAACTCAGGGGATGCTATGACGAATTCCCAACAGGACTGATATGGTTATGTTGGAATGAATTTCCTTTGGATTCAATACCAATTGATTTTTGTCTAGAGAGTCTGGTTGTTCTGGAAATGCAGCATAGTAACTTGAGACAAGTCTGGAAGGGAACTAAATGTCTTCCATCATTGAAGATCCTTGATCTCAGCTTCTCTCATGGCCTTACCGAAACAGCCGACTTTTCGCTTTGCCCCAATATAGAGAAACTAATTCTTATAGATTGCCGAAGCTTGATTGATGTCAGTTCCGTCGTAAACATAAAGAGACTTGTTTACTTGAATATGAGAGACTGCAAAAATCTCCGGATGCTCCCGGAAAACATTTTTGTCCATTTAGAATTACTTGAAACACTCATCATATCTGGATGCTCAAATCTGAATGAGTTTCCACTGGAGATGATGAGGAACATGGAATACTTGAAAGTGCTTGAAACAGATGGAATTCCAATAGATCATATACTGCTGGCTACTCGTGAGGTGTTGAAGTCATGCCCAGGAAAAAGTCGCCTTAGTTTTTGGACCTCTTTACCACCCTCTTTAGTAGCTTTAAGTCTTCGTGGATGCAATCTCTTCGATGATTCATTTCCTATGGATTTTGGTGGCCTGTCCTCATTGCAAAAATTAGATCTAGGTGACAATCCAATATGTAGCCTACCAAATTGTGTCAAAGGACTTACTTGCCTCAAAGAACTTACCTTTTATGACTGCTCGAGACTCAAATCTCTTGTAGAGCTACCAAAACTAGATTGTGATTTGAACGTAGAAGGTTGCCTTGTATTGGAAAGGATAACATTTAAATCAGTTAGGAGCCAAGCAAAAGTGACCTCAGTGCGTGCCAACAACAGCCTGGTGGAGATTGAGTACAACTTCAGGTTAGTTCCCATTGTTAGAGTTGATGTAGAAATGCTCAACCTCTTGGCCTTGTTCAACTTGGACTTGGAATCCATGTCAACCATTCGGATGCACAACCCTTGTGCAGCTCCCTGGCAATATCAGAGTCGTATCCAGGGTGTGTATCAATATGGTATATTCAGCACATATCTTCCTGGGAATGAGGTTCCGGGACAGTTCAGCCACAGAAGAAGAGAAGGGTCATCCTCGATATCAATTACTGTTCCCTTGCCTTTACTTACTGATCTCAGAATTCGAGGGTTGAACATCTTCATAGTCTATGCAAATGCCGACGGTGAATACTACGCTGGTGATTATTCACCTGATGTGACGATCATTAAAGTCAGAAACAAGAGCAAAGGTTTGAAGTGGATGTATGGCGCAACAATTTACGGCATTCCAGCTGAGGGAGAAGACATGATGTGGTTAAGCCATTGGAATATGGAGAATCAAATACAAGGTGGGGATCAAGTGATTGTTTCGGTATTTCTACGACAACCCGATTGGTTTAAGATTAAGGAGTGGGGGATCCAGGTTGTGGAGGAAGACCTAGACCAACCCAACACCGCCAAAGATCCTCATTATCCACGTGTCATTGGTGGAGATTTGTCAAGACATGAGGTGATGCCAGGAACATACTTGCTGTGCTCTTCAATTGACGAACCGGATGAACTGGAAGAAATCGTTTCGGGTAGGGCGACTTGGTTCAATAACCTCAATAGGGACTCTGATGATGAAGATACAGGTCGGTTAGAAGAAGAGCAACAGAAGGTGGAAGGTGATCATGATCACAGTCTTTCAGCAAAGAGAGGATGGAAGATGTGCTCGATAATAATGGCTGCTGTTTCCGCAAAGCTCCAGCTCAAGCCAATTCAAGTGGAATGCAACTGTCTTGAGACCACTGATGATCTGAATCTGAAAACCGAAAGGGAAAATTGGAGATGCCAACCTTTCCTTGAGAGAGAGAAGTTGACCAAGCAACTGGTAATGTGGCAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009664 GO:0009832 GO:0009987 GO:0010289 GO:0010383 GO:0010393 GO:0010394 GO:0012505 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0017144 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0047262 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

1215

Amino Acids

138.88

Weight (kDa)

6.14

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	24 - 193	2.2e-50	TIR domain
TIR_2	PF13676	26 - 122	1.7e-15	TIR domain
NB-ARC	PF00931	208 - 363	4.3e-18	NB-ARC domain
WHD_ROQ1	PF23282	433 - 504	1.6e-17	Disease resistance protein Roq1-like, winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61130
fragaria_vesca	FvH4_7g12620 FvH4_7g12620 FvH4_7g12620 FvH4_7g12620 FvH4_7g12620
malus_domestica	MD00G1136600.v1.1 MD02G1197800.v1.1
prunus_persica	Prupe.2G150800_v2.0.a1 Prupe.2G150800_v2.0.a1
pyrus_communis	pycom02g16150 pycom07g11590
rosa_chinensis	RchiOBHm_Chr1g0351641
rosa_laevigata	RLG00000028393
rosa_multiflora	Rmu_sc0001144.1_g000007
rosa_roxburghii	Rroxscaffold_4G00303640
rosa_rugosa	Rorug01G0219600 Rorug01G0219700
rosa_samantha	Rh1AG234300 Rh1BG204900 Rh1CG218900 Rh1DG231900
rosa_wichuraiana	Rw1G020400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1355
Acc65I	GGTACC	1 cut(s)	845
AccB1I	GGYRCC	2 cut(s)	282, 845
AccB7I	CCANNNNNTGG	1 cut(s)	3184
AccII	CGCG	2 cut(s)	235, 461
AccIII	TCCGGA	1 cut(s)	2058
AciI	CCGC	4 cut(s)	36, 431, 3213, 3495
AclI	AACGTT	2 cut(s)	527, 855
AclWI	GGATC	9 cut(s)	298, 915, 924, 1642, 1885, 3120, 3169, 3182, 3215
AcsI	RAATTY	5 cut(s)	747, 1736, 1772, 2196, 2898
AcuI	CTGAAG	1 cut(s)	2608
AcvI	CACGTG	1 cut(s)	3236
AdeI	CACNNNGTG	1 cut(s)	442
AfaI	GTAC	6 cut(s)	847, 1137, 1585, 1682, 1713, 2618
AfiI	CCNNNNNNNGG	8 cut(s)	212, 375, 1106, 1674, 2533, 3053, 3184, 3367
AflII	CTTAAG	1 cut(s)	1336
AflIII	ACRYGT	1 cut(s)	3235
Alw21I	GWGCWC	2 cut(s)	3296, 3473
Alw26I	GTCTC	8 cut(s)	222, 552, 618, 1843, 2014, 2037, 2461, 3536
AlwI	GGATC	9 cut(s)	298, 915, 924, 1642, 1885, 3120, 3169, 3182, 3215
Ama87I	CYCGRG	4 cut(s)	182, 205, 1520, 2464
Aor13HI	TCCGGA	1 cut(s)	2058
AoxI	GGCC	4 cut(s)	94, 1915, 2356, 2673
ApeKI	GCWGC	6 cut(s)	17, 723, 1016, 1834, 2732, 3485
ApoI	RAATTY	5 cut(s)	747, 1736, 1772, 2196, 2898
Asp700I	GAANNNNTTC	3 cut(s)	748, 1497, 2915
Asp718I	GGTACC	1 cut(s)	845
AspLEI	GCGC	2 cut(s)	463, 3029
AspS9I	GGNCC	3 cut(s)	145, 321, 2274
AsuC2I	CCSGG	5 cut(s)	206, 207, 277, 2069, 2817
AsuHPI	GGTGA	7 cut(s)	310, 2399, 2954, 2958, 2969, 3280, 3437
AsuII	TTCGAA	1 cut(s)	1656
AvaI	CYCGRG	4 cut(s)	182, 205, 1520, 2464
AvaII	GGWCC	3 cut(s)	145, 321, 2274
BamHI	GGATCC	1 cut(s)	3174
BanI	GGYRCC	2 cut(s)	282, 845
BanII	GRGCYC	2 cut(s)	762, 1521
BauI	CACGAG	1 cut(s)	2226
BbrPI	CACGTG	1 cut(s)	3236
BbsI	GAAGAC	6 cut(s)	340, 674, 1868, 2300, 3066, 3198
Bbv12I	GWGCWC	2 cut(s)	3296, 3473
BbvCI	CCTCAGC	1 cut(s)	3051
BbvI	GCAGC	6 cut(s)	29, 735, 1003, 1846, 2744, 3472
BceAI	ACGGC	1 cut(s)	3055
BcgI	CGANNNNNNTGC	4 cut(s)	1646, 1680, 2308, 2342
BciVI	GTATCC	3 cut(s)	771, 1362, 2768
BclI	TGATCA	4 cut(s)	552, 1303, 3427, 3433
BcnI	CCSGG	5 cut(s)	206, 207, 277, 2069, 2817
BcoDI	GTCTC	8 cut(s)	222, 552, 618, 1843, 2014, 2037, 2461, 3536
BfaI	CTAG	9 cut(s)	167, 411, 482, 984, 1808, 2384, 2498, 3197, 3646
BfmI	CTRYAG	2 cut(s)	1200, 1629
BfrI	CTTAAG	1 cut(s)	1336
BfuI	GTATCC	3 cut(s)	771, 1362, 2768
BglII	AGATCT	2 cut(s)	478, 2380
BisI	GCNGC	6 cut(s)	18, 724, 1017, 1835, 2733, 3486
BlsI	GCNGC	6 cut(s)	19, 725, 1018, 1836, 2734, 3487
Bme18I	GGWCC	3 cut(s)	145, 321, 2274
BmeT110I	CYCGRG	4 cut(s)	182, 205, 1520, 2464
BmgT120I	GGNCC	3 cut(s)	145, 321, 2274
BmiI	GGNNCC	6 cut(s)	284, 363, 847, 2564, 2814, 3176
BmrI	ACTGGG	1 cut(s)	57
BmuI	ACTGGG	1 cut(s)	57
BpiI	GAAGAC	6 cut(s)	340, 674, 1868, 2300, 3066, 3198
BpmI	CTGGAG	3 cut(s)	1167, 2168, 3488
Bpu10I	CCTNAGC	1 cut(s)	3051
Bpu14I	TTCGAA	1 cut(s)	1656
BpuEI	CTTGAG	5 cut(s)	103, 1867, 3494, 3560, 3623
BpuMI	CCSGG	5 cut(s)	206, 207, 277, 2069, 2817
BsaAI	YACGTR	1 cut(s)	3236
BsaBI	GATNNNNATC	3 cut(s)	906, 3432, 3558
BsaI	GGTCTC	1 cut(s)	3536
BsaJI	CCNNGG	8 cut(s)	148, 205, 762, 1483, 2248, 2738, 2761, 2801
BsaWI	WCCGGW	2 cut(s)	2058, 3310
BsaXI	ACNNNNNCTCC	4 cut(s)	37, 67, 2600, 2630
Bsc4I	CCNNNNNNNGG	8 cut(s)	212, 375, 1106, 1674, 2533, 3053, 3184, 3367
Bse1I	ACTGG	5 cut(s)	63, 344, 2151, 3324, 3633
Bse3DI	GCAATG	2 cut(s)	675, 2366
Bse8I	GATNNNNATC	3 cut(s)	906, 3432, 3558
BseAI	TCCGGA	1 cut(s)	2058
BseDI	CCNNGG	8 cut(s)	148, 205, 762, 1483, 2248, 2738, 2761, 2801
BseJI	GATNNNNATC	3 cut(s)	906, 3432, 3558
BseLI	CCNNNNNNNGG	8 cut(s)	212, 375, 1106, 1674, 2533, 3053, 3184, 3367
BseMI	GCAATG	2 cut(s)	675, 2366
BseMII	CTCAG	7 cut(s)	339, 1282, 1732, 1915, 2595, 2908, 3042
BseNI	ACTGG	5 cut(s)	63, 344, 2151, 3324, 3633
BseRI	GAGGAG	2 cut(s)	204, 1307
BseXI	GCAGC	6 cut(s)	29, 735, 1003, 1846, 2744, 3472
BseYI	CCCAGC	1 cut(s)	485
BsgI	GTGCAG	3 cut(s)	464, 1478, 2751
Bsh1236I	CGCG	2 cut(s)	235, 461
BshFI	GGCC	4 cut(s)	96, 1917, 2358, 2675
BshNI	GGYRCC	2 cut(s)	282, 845
BsiHKAI	GWGCWC	2 cut(s)	3296, 3473
BsiHKCI	CYCGRG	4 cut(s)	182, 205, 1520, 2464
BsiSI	CCGG	6 cut(s)	206, 277, 2059, 2069, 2816, 3311
BslFI	GGGAC	4 cut(s)	222, 470, 2832, 3383
BslI	CCNNNNNNNGG	8 cut(s)	212, 375, 1106, 1674, 2533, 3053, 3184, 3367
BsmAI	GTCTC	8 cut(s)	222, 552, 618, 1843, 2014, 2037, 2461, 3536
BsmFI	GGGAC	4 cut(s)	222, 470, 2832, 3383
BsmI	GAATGC	4 cut(s)	223, 1404, 3042, 3533
BsnI	GGCC	4 cut(s)	96, 1917, 2358, 2675
Bso31I	GGTCTC	1 cut(s)	3536
BsoBI	CYCGRG	4 cut(s)	182, 205, 1520, 2464
Bsp119I	TTCGAA	1 cut(s)	1656
Bsp1286I	GDGCHC	4 cut(s)	762, 1521, 3296, 3473
Bsp13I	TCCGGA	1 cut(s)	2058
Bsp1407I	TGTACA	2 cut(s)	1680, 1711
Bsp68I	TCGCGA	1 cut(s)	235
BspACI	CCGC	4 cut(s)	36, 431, 3213, 3495
BspANI	GGCC	4 cut(s)	96, 1917, 2358, 2675
BspCNI	CTCAG	7 cut(s)	338, 1281, 1731, 1914, 2594, 2907, 3043
BspEI	TCCGGA	1 cut(s)	2058
BspFNI	CGCG	2 cut(s)	235, 461
BspHI	TCATGA	1 cut(s)	3430
BspLI	GGNNCC	6 cut(s)	284, 363, 847, 2564, 2814, 3176
BspMAI	CTGCAG	1 cut(s)	1633
BspPI	GGATC	9 cut(s)	298, 915, 924, 1642, 1885, 3120, 3169, 3182, 3215
BspQI	GCTCTTC	4 cut(s)	750, 1170, 3301, 3399
BspT104I	TTCGAA	1 cut(s)	1656
BspT107I	GGYRCC	2 cut(s)	282, 845
BspTI	CTTAAG	1 cut(s)	1336
BspTNI	GGTCTC	1 cut(s)	3536
BsrDI	GCAATG	2 cut(s)	675, 2366
BsrGI	TGTACA	2 cut(s)	1680, 1711
BsrI	ACTGG	5 cut(s)	63, 344, 2151, 3324, 3633
BssECI	CCNNGG	8 cut(s)	148, 205, 762, 1483, 2248, 2738, 2761, 2801
BssSI	CACGAG	1 cut(s)	2226
BssT1I	CCWWGG	2 cut(s)	148, 762
Bst2BI	CACGAG	1 cut(s)	2226
Bst4CI	ACNGT	5 cut(s)	2823, 2869, 2942, 3440, 3536
Bst6I	CTCTTC	8 cut(s)	750, 1170, 1483, 1658, 2330, 2833, 3301, 3399
BstAFI	CTTAAG	1 cut(s)	1336
BstAUI	TGTACA	2 cut(s)	1680, 1711
BstBAI	YACGTR	1 cut(s)	3236
BstBI	TTCGAA	1 cut(s)	1656
BstC8I	GCNNGC	5 cut(s)	635, 1080, 1236, 2220, 2589
BstENI	CCTNNNNNAGG	1 cut(s)	1672
BstFNI	CGCG	2 cut(s)	235, 461
BstHHI	GCGC	2 cut(s)	463, 3029
BstMAI	GTCTC	8 cut(s)	222, 552, 618, 1843, 2014, 2037, 2461, 3536
BstMWI	GCNNNNNNNGC	3 cut(s)	482, 1013, 3494
BstNSI	RCATGY	4 cut(s)	637, 655, 1082, 1618
BstSFI	CTRYAG	2 cut(s)	1200, 1629
BstUI	CGCG	2 cut(s)	235, 461
BstV1I	GCAGC	6 cut(s)	29, 735, 1003, 1846, 2744, 3472
BstV2I	GAAGAC	6 cut(s)	340, 674, 1868, 2300, 3066, 3198
BstX2I	RGATCY	6 cut(s)	478, 1647, 1890, 2380, 3174, 3220
BstXI	CCANNNNNNTGG	1 cut(s)	3628
BstYI	RGATCY	6 cut(s)	478, 1647, 1890, 2380, 3174, 3220
BsuI	GTATCC	3 cut(s)	771, 1362, 2768
BsuRI	GGCC	4 cut(s)	96, 1917, 2358, 2675
BtsI	GCAGTG	1 cut(s)	1626
BtsIMutI	CAGTG	4 cut(s)	1626, 2144, 2589, 3546
BtuMI	TCGCGA	1 cut(s)	235
Cac8I	GCNNGC	5 cut(s)	635, 1080, 1236, 2220, 2589
CciI	TCATGA	1 cut(s)	3430
CfoI	GCGC	2 cut(s)	463, 3029
Cfr13I	GGNCC	3 cut(s)	145, 321, 2274
Cfr9I	CCCGGG	1 cut(s)	205
CseI	GACGC	1 cut(s)	467
Csp6I	GTAC	6 cut(s)	846, 1136, 1584, 1681, 1712, 2617
CspCI	CAANNNNNGTGG	2 cut(s)	3504, 3539
CviQI	GTAC	6 cut(s)	846, 1136, 1584, 1681, 1712, 2617
DraI	TTTAAA	2 cut(s)	699, 2551
DraIII	CACNNNGTG	1 cut(s)	442
DrdI	GACNNNNNNGTC	1 cut(s)	1355
DseDI	GACNNNNNNGTC	1 cut(s)	1355
Eam1104I	CTCTTC	8 cut(s)	750, 1170, 1483, 1658, 2330, 2833, 3301, 3399
EarI	CTCTTC	8 cut(s)	750, 1170, 1483, 1658, 2330, 2833, 3301, 3399
Eco130I	CCWWGG	2 cut(s)	148, 762
Eco24I	GRGCYC	2 cut(s)	762, 1521
Eco31I	GGTCTC	1 cut(s)	3536
Eco32I	GATATC	1 cut(s)	2859
Eco47I	GGWCC	3 cut(s)	145, 321, 2274
Eco57I	CTGAAG	1 cut(s)	2608
Eco72I	CACGTG	1 cut(s)	3236
Eco88I	CYCGRG	4 cut(s)	182, 205, 1520, 2464
EcoNI	CCTNNNNNAGG	1 cut(s)	1672
EcoO109I	RGGNCCY	1 cut(s)	321
EcoRI	GAATTC	3 cut(s)	1736, 2196, 2898
EcoRV	GATATC	1 cut(s)	2859
EcoT14I	CCWWGG	2 cut(s)	148, 762
EcoT22I	ATGCAT	2 cut(s)	1467, 1620
EcoT38I	GRGCYC	2 cut(s)	762, 1521
ErhI	CCWWGG	2 cut(s)	148, 762
FalI	AAGNNNNNCTT	5 cut(s)	36, 1637, 1669, 2511, 2543
FaqI	GGGAC	4 cut(s)	222, 470, 2832, 3383
FauNDI	CATATG	2 cut(s)	912, 1620
FbaI	TGATCA	4 cut(s)	552, 1303, 3427, 3433
Fnu4HI	GCNGC	6 cut(s)	18, 724, 1017, 1835, 2733, 3486
FriOI	GRGCYC	2 cut(s)	762, 1521
Fsp4HI	GCNGC	6 cut(s)	18, 724, 1017, 1835, 2733, 3486
FspBI	CTAG	9 cut(s)	167, 411, 482, 984, 1808, 2384, 2498, 3197, 3646
GlaI	GCGC	2 cut(s)	462, 3028
GluI	GCNGC	6 cut(s)	18, 724, 1017, 1835, 2733, 3486
GsaI	CCCAGC	1 cut(s)	489
GsuI	CTGGAG	3 cut(s)	1167, 2168, 3488
HaeIII	GGCC	4 cut(s)	96, 1917, 2358, 2675
HapII	CCGG	6 cut(s)	206, 277, 2059, 2069, 2816, 3311
HgaI	GACGC	1 cut(s)	467
HhaI	GCGC	2 cut(s)	463, 3029
Hin6I	GCGC	2 cut(s)	461, 3027
HinP1I	GCGC	2 cut(s)	461, 3027
HincII	GTYRAC	2 cut(s)	2706, 3618
HindII	GTYRAC	2 cut(s)	2706, 3618
HindIII	AAGCTT	2 cut(s)	994, 1984
HpaII	CCGG	6 cut(s)	206, 277, 2059, 2069, 2816, 3311
HphI	GGTGA	7 cut(s)	310, 2399, 2954, 2958, 2969, 3280, 3437
Hpy166II	GTNNAC	6 cut(s)	1586, 1712, 2011, 2029, 2706, 3618
Hpy8I	GTNNAC	6 cut(s)	1586, 1712, 2011, 2029, 2706, 3618
Hpy99I	CGWCG	4 cut(s)	374, 1506, 2009, 2942
HpyAV	CCTTC	8 cut(s)	148, 1100, 1678, 1855, 2513, 2837, 3409, 3416
HpyCH4III	ACNGT	5 cut(s)	2823, 2869, 2942, 3440, 3536
HpyCH4IV	ACGT	8 cut(s)	357, 372, 527, 855, 1138, 1528, 2514, 3235
HpyF10VI	GCNNNNNNNGC	3 cut(s)	482, 1013, 3494
HpySE526I	ACGT	8 cut(s)	357, 372, 527, 855, 1138, 1528, 2514, 3235
HspAI	GCGC	2 cut(s)	461, 3027
Kpn2I	TCCGGA	1 cut(s)	2058
KpnI	GGTACC	1 cut(s)	849
Ksp22I	TGATCA	4 cut(s)	552, 1303, 3427, 3433
LguI	GCTCTTC	4 cut(s)	750, 1170, 3301, 3399
LmnI	GCTCC	4 cut(s)	2070, 2562, 2740, 3507
Lsp1109I	GCAGC	6 cut(s)	29, 735, 1003, 1846, 2744, 3472
MaeI	CTAG	9 cut(s)	167, 411, 482, 984, 1808, 2384, 2498, 3197, 3646
MaeII	ACGT	8 cut(s)	357, 372, 527, 855, 1138, 1528, 2514, 3235
MaeIII	GTNAC	8 cut(s)	523, 1046, 1432, 1478, 1841, 2387, 2575, 2974
MfeI	CAATTG	4 cut(s)	1395, 1437, 1794, 3300
MflI	RGATCY	6 cut(s)	478, 1647, 1890, 2380, 3174, 3220
MhlI	GDGCHC	4 cut(s)	762, 1521, 3296, 3473
MlyI	GAGTC	7 cut(s)	224, 418, 620, 1822, 2463, 2761, 3365
MmeI	TCCRAC	2 cut(s)	393, 1745
Mph1103I	ATGCAT	2 cut(s)	1467, 1620
MroI	TCCGGA	1 cut(s)	2058
MroXI	GAANNNNTTC	3 cut(s)	748, 1497, 2915
MslI	CAYNNNNRTG	3 cut(s)	1619, 1676, 2714
MspA1I	CMGCKG	1 cut(s)	3050
MspCI	CTTAAG	1 cut(s)	1336
MspI	CCGG	6 cut(s)	206, 277, 2059, 2069, 2816, 3311
MunI	CAATTG	4 cut(s)	1395, 1437, 1794, 3300
Mva1269I	GAATGC	4 cut(s)	223, 1404, 3042, 3533
MvnI	CGCG	2 cut(s)	235, 461
MwoI	GCNNNNNNNGC	3 cut(s)	482, 1013, 3494
NciI	CCSGG	5 cut(s)	206, 207, 277, 2069, 2817
NdeI	CATATG	2 cut(s)	912, 1620
NlaIV	GGNNCC	6 cut(s)	284, 363, 847, 2564, 2814, 3176
NmuCI	GTSAC	4 cut(s)	1478, 2387, 2575, 2974
NruI	TCGCGA	1 cut(s)	235
NsiI	ATGCAT	2 cut(s)	1467, 1620
NspI	RCATGY	4 cut(s)	637, 655, 1082, 1618
NspV	TTCGAA	1 cut(s)	1656
PaeI	GCATGC	2 cut(s)	637, 1082
PaeR7I	CTCGAG	2 cut(s)	182, 2464
PagI	TCATGA	1 cut(s)	3430
PciSI	GCTCTTC	4 cut(s)	750, 1170, 3301, 3399
PcsI	WCGNNNNNNNCGW	2 cut(s)	180, 3341
PctI	GAATGC	4 cut(s)	223, 1404, 3042, 3533
PdmI	GAANNNNTTC	3 cut(s)	748, 1497, 2915
PflMI	CCANNNNNTGG	1 cut(s)	3184
PfoI	TCCNGGA	3 cut(s)	958, 2067, 2815
PkrI	GCNGC	6 cut(s)	19, 725, 1018, 1836, 2734, 3487
PleI	GAGTC	7 cut(s)	224, 418, 619, 1821, 2463, 2760, 3365
PmaCI	CACGTG	1 cut(s)	3236
PmlI	CACGTG	1 cut(s)	3236
PpsI	GAGTC	7 cut(s)	224, 418, 619, 1821, 2463, 2760, 3365
Ppu21I	YACGTR	1 cut(s)	3236
PpuMI	RGGWCCY	1 cut(s)	321
Psp1406I	AACGTT	2 cut(s)	527, 855
Psp5II	RGGWCCY	1 cut(s)	321
PspCI	CACGTG	1 cut(s)	3236
PspFI	CCCAGC	1 cut(s)	485
PspN4I	GGNNCC	6 cut(s)	284, 363, 847, 2564, 2814, 3176
PspPI	GGNCC	3 cut(s)	145, 321, 2274
PspPPI	RGGWCCY	1 cut(s)	321
PsrI	GAACNNNNNNTAC	4 cut(s)	62, 94, 2153, 2185
PstI	CTGCAG	1 cut(s)	1633
PsuI	RGATCY	6 cut(s)	478, 1647, 1890, 2380, 3174, 3220
PvuII	CAGCTG	1 cut(s)	3050
RruI	TCGCGA	1 cut(s)	235
RsaI	GTAC	6 cut(s)	847, 1137, 1585, 1682, 1713, 2618
RsaNI	GTAC	6 cut(s)	846, 1136, 1584, 1681, 1712, 2617
RseI	CAYNNNNRTG	3 cut(s)	1619, 1676, 2714
SapI	GCTCTTC	4 cut(s)	750, 1170, 3301, 3399
SatI	GCNGC	6 cut(s)	18, 724, 1017, 1835, 2733, 3486
Sau96I	GGNCC	3 cut(s)	145, 321, 2274
SchI	GAGTC	7 cut(s)	224, 418, 620, 1822, 2463, 2761, 3365
SduI	GDGCHC	4 cut(s)	762, 1521, 3296, 3473
SfcI	CTRYAG	2 cut(s)	1200, 1629
Sfr274I	CTCGAG	2 cut(s)	182, 2464
SfuI	TTCGAA	1 cut(s)	1656
SinI	GGWCC	3 cut(s)	145, 321, 2274
SlaI	CTCGAG	2 cut(s)	182, 2464
SmaI	CCCGGG	1 cut(s)	207
SmiI	ATTTAAAT	1 cut(s)	2551
SmiMI	CAYNNNNRTG	3 cut(s)	1619, 1676, 2714
SmlI	CTYRAG	8 cut(s)	82, 182, 1336, 1846, 2464, 3509, 3539, 3602
SmoI	CTYRAG	8 cut(s)	82, 182, 1336, 1846, 2464, 3509, 3539, 3602
SphI	GCATGC	2 cut(s)	637, 1082
SsiI	CCGC	4 cut(s)	36, 431, 3213, 3495
SspMI	CTAG	9 cut(s)	167, 411, 482, 984, 1808, 2384, 2498, 3197, 3646
StyI	CCWWGG	2 cut(s)	148, 762
SwaI	ATTTAAAT	1 cut(s)	2551
TaaI	ACNGT	5 cut(s)	2823, 2869, 2942, 3440, 3536
TaiI	ACGT	8 cut(s)	360, 375, 530, 858, 1141, 1531, 2517, 3238
TaqI	TCGA	9 cut(s)	183, 616, 1504, 1656, 2328, 2465, 2855, 2902, 3473
TaqII	GACCGA	1 cut(s)	611
TatI	WGTACW	3 cut(s)	1680, 1711, 2616
TscAI	CASTG	4 cut(s)	1633, 2151, 2589, 3553
TseFI	GTSAC	4 cut(s)	1478, 2387, 2575, 2974
TseI	GCWGC	6 cut(s)	17, 723, 1016, 1834, 2732, 3485
Tsp45I	GTSAC	4 cut(s)	1478, 2387, 2575, 2974
TspGWI	ACGGA	3 cut(s)	524, 1146, 1993
TspMI	CCCGGG	1 cut(s)	205
TspRI	CASTG	4 cut(s)	1633, 2151, 2589, 3553
Van91I	CCANNNNNTGG	1 cut(s)	3184
Vha464I	CTTAAG	1 cut(s)	1336
VpaK11BI	GGWCC	3 cut(s)	145, 321, 2274
XagI	CCTNNNNNAGG	1 cut(s)	1672
XapI	RAATTY	5 cut(s)	747, 1736, 1772, 2196, 2898
XbaI	TCTAGA	2 cut(s)	166, 1807
XceI	RCATGY	4 cut(s)	637, 655, 1082, 1618
XcmI	CCANNNNNNNNNTGG	2 cut(s)	599, 2599
XhoI	CTCGAG	2 cut(s)	182, 2464
XmaI	CCCGGG	1 cut(s)	205
XmnI	GAANNNNTTC	3 cut(s)	748, 1497, 2915
XspI	CTAG	9 cut(s)	167, 411, 482, 984, 1808, 2384, 2498, 3197, 3646
Zsp2I	ATGCAT	2 cut(s)	1467, 1620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.