Rorug01G0239800

Acetyl-coenzyme A carboxylase carboxyl transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0012647
Physical Location & Seq
Reverse (-)
34530540 .. 34530812
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0239800.1

Sequence Viewer

Length: 273 bp
ATGCAGAGCCTCGCGGTGGAGCTTGCCGACGGCGCGTCGGAGCTTCTGCAACTCGTCAACGACGTTGTCGGCGCTGGAAAGTCGGTCAAAGGCAGCGGATTTGACAATCCGATTTCGCAATCCGTCAAAAACCAGAGTTCGGTCATCACTGTCGATCTTTCAAGATGCAAGCTTTGCGACCCCAAAACAATTTTGACTACTGCGGGTGACAGTGGTCTGGGATGTGATGCGAACCTGCTACTGCACCGACGATCCCACCAGGGCGATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00061 ko00620 ko00640 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00620 map00640 map00720 map01100 map01110 map01120 map01130 map01200 map01212
Pfam Domains
Protein Families
ACCA

Protein Analysis

90

Amino Acids

9.41

Weight (kDa)

6.02

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 243
AccII CGCG 2 cut(s) 14, 35
AciI CCGC 3 cut(s) 14, 96, 203
AclWI GGATC 1 cut(s) 246
AfiI CCNNNNNNNGG 2 cut(s) 16, 139
AgsI TTSAA 1 cut(s) 162
AhdI GACNNNNNGTC 1 cut(s) 34
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 3 cut(s) 22, 43, 172
AluI AGCT 3 cut(s) 22, 43, 172
AlwI GGATC 1 cut(s) 246
ApeKI GCWGC 1 cut(s) 93
AspLEI GCGC 2 cut(s) 35, 74
AsuHPI GGTGA 1 cut(s) 218
BbvI GCAGC 1 cut(s) 105
BceAI ACGGC 1 cut(s) 46
BciT130I CCWGG 1 cut(s) 260
BfoI RGCGCY 1 cut(s) 75
BfuAI ACCTGC 1 cut(s) 243
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 260
BmeRI GACNNNNNGTC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 2 cut(s) 155, 217
BoxI GACNNNNGTC 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 139
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 227
BseLI CCNNNNNNNGG 2 cut(s) 16, 139
BseXI GCAGC 1 cut(s) 105
BsgI GTGCAG 1 cut(s) 227
Bsh1236I CGCG 2 cut(s) 14, 35
Bsh1285I CGRYCG 1 cut(s) 268
BsiEI CGRYCG 1 cut(s) 268
BslI CCNNNNNNNGG 2 cut(s) 16, 139
Bsp143I GATC 3 cut(s) 154, 251, 265
BspACI CCGC 3 cut(s) 14, 96, 203
BspFNI CGCG 2 cut(s) 14, 35
BspMI ACCTGC 1 cut(s) 243
BspPI GGATC 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 3 cut(s) 154, 251, 265
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 151, 212
BstAPI GCANNNNNTGC 1 cut(s) 174
BstC8I GCNNGC 2 cut(s) 24, 170
BstF5I GGATG 1 cut(s) 227
BstFNI CGCG 2 cut(s) 14, 35
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 2 cut(s) 35, 74
BstKTI GATC 3 cut(s) 157, 254, 268
BstMBI GATC 3 cut(s) 154, 251, 265
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 2 cut(s) 32, 174
BstNI CCWGG 1 cut(s) 260
BstPAI GACNNNNGTC 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 258
BstUI CGCG 2 cut(s) 14, 35
BstV1I GCAGC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 227
BtsIMutI CAGTG 2 cut(s) 147, 217
BveI ACCTGC 1 cut(s) 243
Cac8I GCNNGC 2 cut(s) 24, 170
CfoI GCGC 2 cut(s) 35, 74
CseI GACGC 1 cut(s) 24
CviJI RGCY 4 cut(s) 9, 22, 43, 172
CviKI_1 RGCY 4 cut(s) 9, 22, 43, 172
DpnI GATC 3 cut(s) 156, 253, 267
DpnII GATC 3 cut(s) 154, 251, 265
DriI GACNNNNNGTC 1 cut(s) 34
Eam1105I GACNNNNNGTC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 258
FauI CCCGC 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 94
FokI GGATG 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 94
GlaI GCGC 2 cut(s) 34, 73
GluI GCNGC 1 cut(s) 94
HaeII RGCGCY 1 cut(s) 75
HgaI GACGC 1 cut(s) 24
HhaI GCGC 2 cut(s) 35, 74
Hin6I GCGC 2 cut(s) 33, 72
HinP1I GCGC 2 cut(s) 33, 72
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HindIII AAGCTT 1 cut(s) 170
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 2 cut(s) 40, 111
Hpy188III TCNNGA 1 cut(s) 162
Hpy8I GTNNAC 1 cut(s) 58
Hpy99I CGWCG 4 cut(s) 32, 40, 65, 252
HpyCH4III ACNGT 2 cut(s) 151, 212
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 4 cut(s) 4, 49, 168, 244
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 174
HpySE526I ACGT 1 cut(s) 63
HspAI GCGC 2 cut(s) 33, 72
Kzo9I GATC 3 cut(s) 154, 251, 265
LmnI GCTCC 2 cut(s) 19, 40
LpnPI CCDG 5 cut(s) 60, 146, 203, 245, 248
Lsp1109I GCAGC 1 cut(s) 105
LweI GCATC 2 cut(s) 155, 217
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 206
MalI GATC 3 cut(s) 156, 253, 267
MboI GATC 3 cut(s) 154, 251, 265
MluCI AATT 1 cut(s) 189
MmeI TCCRAC 1 cut(s) 18
MnlI CCTC 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 260
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 2 cut(s) 14, 35
MwoI GCNNNNNNNGC 2 cut(s) 32, 174
NdeII GATC 3 cut(s) 154, 251, 265
NmuCI GTSAC 1 cut(s) 206
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PflFI GACNNNGTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 95
Ple19I CGATCG 1 cut(s) 268
PshAI GACNNNNGTC 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PsyI GACNNNGTC 1 cut(s) 65
PvuI CGATCG 1 cut(s) 268
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 3 cut(s) 154, 251, 265
ScrFI CCNGG 1 cut(s) 260
SetI ASST 5 cut(s) 24, 45, 66, 174, 237
SfaNI GCATC 2 cut(s) 155, 217
Sse9I AATT 1 cut(s) 189
SsiI CCGC 3 cut(s) 14, 96, 203
StyD4I CCNGG 1 cut(s) 258
TaaI ACNGT 2 cut(s) 151, 212
TaiI ACGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 153
TaqII GACCGA 2 cut(s) 73, 130
TasI AATT 1 cut(s) 189
TscAI CASTG 2 cut(s) 154, 217
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 1 cut(s) 93
Tsp45I GTSAC 1 cut(s) 206
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 2 cut(s) 154, 217
Tth111I GACNNNGTC 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.