Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012647

Physical Location & Seq

Genomic Coordinates Forward (+)

34533984 .. 34534292

Gene Structure 309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0239900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCAAGCTTTGCGACCCCAAAACAATTTTGACTACTGCATTTCCGTCTCCGACAAAGATCTGGCCGAGCCCAACCGGAAAAGAAAGCTCCGGGAGGATTATTATATGAGGGTGACGGTGGTCTGGGATGTGATGCGAACCTGCTACTGCACCGACGATCCCACCAGGGCGATCGTTGATCTCGATTTCGAAACCACCACTTTTCGCAATCTGGAATATTGGCTCTTCACCGTCATCGACAACGACGTTGGCGTCGTAGACAACATGATAACGGGAATTGGGAGTTGTTTATGGAAGCGTGCCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00061 ko00620 ko00640 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00620 map00640 map00720 map01100 map01110 map01120 map01130 map01200 map01212

Pfam Domains

Protein Families

ACCA

Protein Analysis

102

Amino Acids

12.04

Weight (kDa)

4.82

Isoelectric Point (pI)

34.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012647)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13820 FvH4_7g13820 FvH4_7g13820 FvH4_7g13820 FvH4_7g13820
malus_domestica	MD01G1054300.v1.1
prunus_persica	Prupe.2G163900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0354001
rosa_laevigata	RLG00000028237
rosa_multiflora	Rmu_sc0001763.1_g000012
rosa_roxburghii	Rroxscaffold_4G00301380
rosa_rugosa	Rorug01G0239800 Rorug01G0239900 Rorug01G0240000.1
rosa_samantha	Rh1AG251300 Rh1BG222900 Rh1CG235500 Rh1DG249800
rosa_wichuraiana	Rw1G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
Acc36I	ACCTGC	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	258
AclWI	GGATC	1 cut(s)	152
AcoI	YGGCCR	1 cut(s)	63
AcyI	GRCGYC	1 cut(s)	252
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	2 cut(s)	8, 88
AluI	AGCT	2 cut(s)	8, 88
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	1 cut(s)	63
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	124, 220
AsuII	TTCGAA	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	72
BceAI	ACGGC	1 cut(s)	287
BciT130I	CCWGG	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	52
BfuAI	ACCTGC	1 cut(s)	149
BglII	AGATCT	1 cut(s)	58
Bme1390I	CCNGG	2 cut(s)	92, 166
BmrFI	CCNGG	2 cut(s)	92, 166
BmsI	GCATC	1 cut(s)	123
BoxI	GACNNNNGTC	1 cut(s)	119
Bpu14I	TTCGAA	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	133
BsgI	GTGCAG	1 cut(s)	133
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	65
BsiEI	CGRYCG	1 cut(s)	174
BsiSI	CCGG	2 cut(s)	76, 91
BsmAI	GTCTC	1 cut(s)	52
BsmBI	CGTCTC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	65
Bsp119I	TTCGAA	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	4 cut(s)	58, 157, 171, 178
BspANI	GGCC	1 cut(s)	65
BspMI	ACCTGC	1 cut(s)	149
BspPI	GGATC	1 cut(s)	152
BspQI	GCTCTTC	1 cut(s)	230
BspT104I	TTCGAA	1 cut(s)	189
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	4 cut(s)	58, 157, 171, 178
BssNI	GRCGYC	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	2 cut(s)	118, 232
Bst6I	CTCTTC	1 cut(s)	230
BstACI	GRCGYC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstBI	TTCGAA	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	6, 300
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	4 cut(s)	61, 160, 174, 181
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	4 cut(s)	58, 157, 171, 178
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	166
BstPAI	GACNNNNGTC	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	90, 164
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	133
BveI	ACCTGC	1 cut(s)	149
Cac8I	GCNNGC	2 cut(s)	6, 300
CseI	GACGC	1 cut(s)	241
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	5 cut(s)	8, 65, 70, 88, 223
CviKI_1	RGCY	5 cut(s)	8, 65, 70, 88, 223
DpnI	GATC	4 cut(s)	60, 159, 173, 180
DpnII	GATC	4 cut(s)	58, 157, 171, 178
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco24I	GRGCYC	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	164
EcoT38I	GRGCYC	1 cut(s)	72
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	1 cut(s)	268
FaiI	YATR	4 cut(s)	105, 107, 266, 292
FatI	CATG	1 cut(s)	264
FblI	GTMKAC	1 cut(s)	258
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	2 cut(s)	76, 91
HgaI	GACGC	1 cut(s)	241
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	6
HpaII	CCGG	2 cut(s)	76, 91
HphI	GGTGA	2 cut(s)	124, 220
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	2 cut(s)	182, 212
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	3 cut(s)	158, 248, 257
HpyCH4III	ACNGT	2 cut(s)	118, 232
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	3 cut(s)	4, 39, 150
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	1 cut(s)	268
Kzo9I	GATC	4 cut(s)	58, 157, 171, 178
LguI	GCTCTTC	1 cut(s)	230
LmnI	GCTCC	1 cut(s)	93
LpnPI	CCDG	8 cut(s)	47, 89, 104, 109, 151, 154, 178, 197
LweI	GCATC	1 cut(s)	123
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	4 cut(s)	60, 159, 173, 180
MboI	GATC	4 cut(s)	58, 157, 171, 178
MboII	GAAGA	1 cut(s)	217
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	2 cut(s)	25, 276
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	2 cut(s)	88, 102
MspI	CCGG	2 cut(s)	76, 91
MspR9I	CCNGG	2 cut(s)	92, 166
MvaI	CCWGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	10
NciI	CCSGG	1 cut(s)	92
NdeII	GATC	4 cut(s)	58, 157, 171, 178
NlaIII	CATG	1 cut(s)	268
NmeAIII	GCCGAG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	112
NspV	TTCGAA	1 cut(s)	189
PciSI	GCTCTTC	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	4 cut(s)	180, 243, 249, 252
PfoI	TCCNGGA	1 cut(s)	90
Ple19I	CGATCG	1 cut(s)	174
PshAI	GACNNNNGTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	58
PvuI	CGATCG	1 cut(s)	174
SapI	GCTCTTC	1 cut(s)	230
Sau3AI	GATC	4 cut(s)	58, 157, 171, 178
ScrFI	CCNGG	2 cut(s)	92, 166
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	4 cut(s)	10, 90, 143, 249
SfaNI	GCATC	1 cut(s)	123
SfuI	TTCGAA	1 cut(s)	189
Sse9I	AATT	2 cut(s)	25, 276
SspI	AATATT	1 cut(s)	218
StyD4I	CCNGG	2 cut(s)	90, 164
TaaI	ACNGT	2 cut(s)	118, 232
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	3 cut(s)	183, 189, 237
TasI	AATT	2 cut(s)	25, 276
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspGWI	ACGGA	1 cut(s)	34
XmiI	GTMKAC	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.