Rorug01G0247400

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0019865
Physical Location & Seq
Reverse (-)
35482463 .. 35483239
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0247400.1

Sequence Viewer

Length: 591 bp
ATGCATCATTACTTGGCATATGTCCTCCACCAAGCTAGATATATGCTGGACTGGTTCTACATGTTAGAGATCATGGCTTATTTATCTACGCAGGTTTTATCAAAAATCTATCTTGAAGGTGGTGATCTACTATATCCATTTGTTCAGCTTCAGACCTTGAAAATTCAGACTACTAGTCTGGACAGACACGATATTCCAGGTATAGCTTGCCTATTCAAGAGCTCTCCAACTGTCCAGACCATCATAATTGAGATACTTGGTGATAGAGCAAGAGATAATGTTCAGAAATGGTTCGATGTTTCGTTGGACAAGACTTACGCGCACGTGCAATACTGGGAAAGTCAAGCTCAGGCTTTAAGTGACTTCCTATATCACCTGAAGGTAGCAATGATTCACGTCAAGGGATCCATGATCCATCAGTGTGTGGTTACTCTCGCCAGGTTTTTGCTTGAACATGGAAGAGGCTTGCAAGAAATGGTTCTAAGTTCCCAGCAGCTCAATTCCGACAATCTCTCTCTTTGGGAGAATCAAATAAGGTTACTAGATGGATTCCCTAGGGCATCTGCTGATGTCAGACTTGCAGTTGCTTAA

Protein Analysis

196

Amino Acids

22.64

Weight (kDa)

6.28

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019865)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0355671
rosa_laevigata RLG00000028133
rosa_multiflora Rmu_sc0000273.1_g000001 Rmu_sc0002037.1_g000003 Rmu_sc0002037.1_g000026
rosa_roxburghii Rroxscaffold_4G00300450
rosa_rugosa Rorug01G0247400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 82
AccII CGCG 1 cut(s) 320
AclWI GGATC 3 cut(s) 399, 406, 412
AcsI RAATTY 1 cut(s) 162
AcuI CTGAAG 2 cut(s) 134, 398
AcvI CACGTG 1 cut(s) 325
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 4 cut(s) 116, 160, 217, 452
AhdI GACNNNNNGTC 1 cut(s) 174
AhlI ACTAGT 1 cut(s) 173
AjiI CACGTC 1 cut(s) 397
AjnI CCWGG 2 cut(s) 196, 437
AluBI AGCT 6 cut(s) 35, 148, 206, 222, 347, 496
AluI AGCT 6 cut(s) 35, 148, 206, 222, 347, 496
Alw21I GWGCWC 1 cut(s) 224
AlwI GGATC 3 cut(s) 399, 406, 412
ApeKI GCWGC 1 cut(s) 493
ApoI RAATTY 1 cut(s) 162
Asp700I GAANNNNTTC 2 cut(s) 290, 477
AspA2I CCTAGG 1 cut(s) 554
AspLEI GCGC 1 cut(s) 322
AsuHPI GGTGA 3 cut(s) 134, 272, 365
AvrII CCTAGG 1 cut(s) 554
BamHI GGATCC 1 cut(s) 404
BanII GRGCYC 1 cut(s) 224
BbrPI CACGTG 1 cut(s) 325
Bbv12I GWGCWC 1 cut(s) 224
BbvI GCAGC 1 cut(s) 505
BccI CCATC 3 cut(s) 248, 423, 539
BciT130I CCWGG 2 cut(s) 198, 439
BcuI ACTAGT 1 cut(s) 173
BfaI CTAG 4 cut(s) 36, 174, 542, 555
BfuAI ACCTGC 1 cut(s) 82
BisI GCNGC 1 cut(s) 494
BlnI CCTAGG 1 cut(s) 554
BlsI GCNGC 1 cut(s) 495
Bme1390I CCNGG 2 cut(s) 198, 439
BmeRI GACNNNNNGTC 1 cut(s) 174
BmgBI CACGTC 1 cut(s) 397
BmiI GGNNCC 1 cut(s) 406
BmrFI CCNGG 2 cut(s) 198, 439
BmrI ACTGGG 1 cut(s) 343
BmsI GCATC 2 cut(s) 13, 569
BmuI ACTGGG 1 cut(s) 343
Bpu10I CCTNAGC 1 cut(s) 348
BsaAI YACGTR 1 cut(s) 325
BsaJI CCNNGG 1 cut(s) 554
Bse1I ACTGG 2 cut(s) 56, 338
Bse3DI GCAATG 1 cut(s) 393
BseBI CCWGG 2 cut(s) 198, 439
BseDI CCNNGG 1 cut(s) 554
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 2 cut(s) 56, 338
BseXI GCAGC 1 cut(s) 505
BseYI CCCAGC 1 cut(s) 489
Bsh1236I CGCG 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 224
Bsp143I GATC 4 cut(s) 69, 124, 404, 411
BspCNI CTCAG 1 cut(s) 361
BspFNI CGCG 1 cut(s) 320
BspLI GGNNCC 1 cut(s) 406
BspMI ACCTGC 1 cut(s) 82
BspPI GGATC 3 cut(s) 399, 406, 412
BsrDI GCAATG 1 cut(s) 393
BsrI ACTGG 2 cut(s) 56, 338
BssECI CCNNGG 1 cut(s) 554
BssMI GATC 4 cut(s) 69, 124, 404, 411
BssT1I CCWWGG 1 cut(s) 554
Bst2UI CCWGG 2 cut(s) 198, 439
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 1 cut(s) 454
BstBAI YACGTR 1 cut(s) 325
BstC8I GCNNGC 2 cut(s) 208, 467
BstDEI CTNAG 2 cut(s) 348, 482
BstFNI CGCG 1 cut(s) 320
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 4 cut(s) 72, 127, 407, 414
BstMBI GATC 4 cut(s) 69, 124, 404, 411
BstNI CCWGG 2 cut(s) 198, 439
BstNSI RCATGY 1 cut(s) 64
BstSCI CCNGG 2 cut(s) 196, 437
BstUI CGCG 1 cut(s) 320
BstV1I GCAGC 1 cut(s) 505
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
BtrI CACGTC 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 425
BveI ACCTGC 1 cut(s) 82
Cac8I GCNNGC 2 cut(s) 208, 467
CfoI GCGC 1 cut(s) 322
CviAII CATG 4 cut(s) 61, 73, 409, 455
CviJI RGCY 9 cut(s) 35, 77, 148, 206, 222, 347, 353, 465, 496
CviKI_1 RGCY 9 cut(s) 35, 77, 148, 206, 222, 347, 353, 465, 496
DdeI CTNAG 2 cut(s) 348, 482
DpnI GATC 4 cut(s) 71, 126, 406, 413
DpnII GATC 4 cut(s) 69, 124, 404, 411
DriI GACNNNNNGTC 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 454
Eam1105I GACNNNNNGTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 454
Ecl136II GAGCTC 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 554
Eco24I GRGCYC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 222
Eco57I CTGAAG 2 cut(s) 134, 398
Eco72I CACGTG 1 cut(s) 325
EcoICRI GAGCTC 1 cut(s) 222
EcoRII CCWGG 2 cut(s) 196, 437
EcoT14I CCWWGG 1 cut(s) 554
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 554
FaeI CATG 4 cut(s) 64, 76, 412, 458
FatI CATG 4 cut(s) 60, 72, 408, 454
FauNDI CATATG 1 cut(s) 19
Fnu4HI GCNGC 1 cut(s) 494
FriOI GRGCYC 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 494
FspBI CTAG 4 cut(s) 36, 174, 542, 555
GlaI GCGC 1 cut(s) 321
GluI GCNGC 1 cut(s) 494
GsaI CCCAGC 1 cut(s) 493
HhaI GCGC 1 cut(s) 322
Hin1II CATG 4 cut(s) 64, 76, 412, 458
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HinfI GANTC 3 cut(s) 391, 526, 549
HphI GGTGA 3 cut(s) 134, 272, 365
Hpy188I TCNGA 5 cut(s) 153, 168, 285, 505, 575
Hpy188III TCNNGA 4 cut(s) 113, 179, 217, 235
HpyAV CCTTC 2 cut(s) 110, 373
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 2 cut(s) 324, 396
HpyCH4V TGCA 4 cut(s) 4, 328, 469, 581
HpyF3I CTNAG 2 cut(s) 348, 482
HpySE526I ACGT 2 cut(s) 324, 396
Hsp92II CATG 4 cut(s) 64, 76, 412, 458
HspAI GCGC 1 cut(s) 320
Kzo9I GATC 4 cut(s) 69, 124, 404, 411
Lsp1109I GCAGC 1 cut(s) 505
LweI GCATC 2 cut(s) 13, 569
MaeI CTAG 4 cut(s) 36, 174, 542, 555
MaeII ACGT 2 cut(s) 324, 396
MaeIII GTNAC 3 cut(s) 359, 427, 537
MalI GATC 4 cut(s) 71, 126, 406, 413
MboI GATC 4 cut(s) 69, 124, 404, 411
MboII GAAGA 1 cut(s) 471
MflI RGATCY 1 cut(s) 404
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 3 cut(s) 162, 246, 499
MmeI TCCRAC 3 cut(s) 251, 285, 528
MnlI CCTC 2 cut(s) 35, 455
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 2 cut(s) 290, 477
MseI TTAA 2 cut(s) 356, 589
MslI CAYNNNNRTG 1 cut(s) 420
MspR9I CCNGG 2 cut(s) 198, 439
MvaI CCWGG 2 cut(s) 198, 439
MvnI CGCG 1 cut(s) 320
NdeI CATATG 1 cut(s) 19
NdeII GATC 4 cut(s) 69, 124, 404, 411
NlaIII CATG 4 cut(s) 64, 76, 412, 458
NlaIV GGNNCC 1 cut(s) 406
NmuCI GTSAC 1 cut(s) 359
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 64
PciI ACATGT 1 cut(s) 60
PdmI GAANNNNTTC 2 cut(s) 290, 477
PfeI GAWTC 3 cut(s) 391, 526, 549
PkrI GCNGC 1 cut(s) 495
PmaCI CACGTG 1 cut(s) 325
PmlI CACGTG 1 cut(s) 325
Ppu21I YACGTR 1 cut(s) 325
PscI ACATGT 1 cut(s) 60
Psp124BI GAGCTC 1 cut(s) 224
Psp6I CCWGG 2 cut(s) 196, 437
PspCI CACGTG 1 cut(s) 325
PspFI CCCAGC 1 cut(s) 489
PspGI CCWGG 2 cut(s) 196, 437
PspN4I GGNNCC 1 cut(s) 406
PsuI RGATCY 1 cut(s) 404
RseI CAYNNNNRTG 1 cut(s) 420
SacI GAGCTC 1 cut(s) 224
SaqAI TTAA 2 cut(s) 356, 589
SatI GCNGC 1 cut(s) 494
Sau3AI GATC 4 cut(s) 69, 124, 404, 411
ScrFI CCNGG 2 cut(s) 198, 439
SduI GDGCHC 1 cut(s) 224
SfaNI GCATC 2 cut(s) 13, 569
SmiMI CAYNNNNRTG 1 cut(s) 420
SpeI ACTAGT 1 cut(s) 173
Sse9I AATT 3 cut(s) 162, 246, 499
SspMI CTAG 4 cut(s) 36, 174, 542, 555
SstI GAGCTC 1 cut(s) 224
StyD4I CCNGG 2 cut(s) 196, 437
StyI CCWWGG 1 cut(s) 554
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 2 cut(s) 327, 399
TaqI TCGA 1 cut(s) 294
TasI AATT 3 cut(s) 162, 246, 499
TfiI GAWTC 3 cut(s) 391, 526, 549
Tru1I TTAA 2 cut(s) 356, 589
Tru9I TTAA 2 cut(s) 356, 589
TscAI CASTG 1 cut(s) 425
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 1 cut(s) 493
Tsp45I GTSAC 1 cut(s) 359
TspRI CASTG 1 cut(s) 425
XapI RAATTY 1 cut(s) 162
XceI RCATGY 1 cut(s) 64
XmaJI CCTAGG 1 cut(s) 554
XmnI GAANNNNTTC 2 cut(s) 290, 477
XspI CTAG 4 cut(s) 36, 174, 542, 555
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.