Rorug01G0292000

3-phosphoinositide-dependent protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009841
Physical Location & Seq
Reverse (-)
40843227 .. 40843907
681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0292000.1

Sequence Viewer

Length: 681 bp
ATGATGACCCCTAACTTCAGCGATGAAATTGCCTTTTTCCTTGCTCCTGTTGGCTACCATATTCCAACCAACTCTCGCGAAGCTGAACTGGGATTATTCAACTACACCACCAAAAATAATGCCTTGTCCAAAAACCAGATTGTAGCCGTAGAGTTCGACACCTGGGGAAACAGTGGTTCAGATACAGCCGGGCCGCATATTGGGATCGACATCAATGAAATCTCTTCGGTTGTGTACACCAATTGGAATGCCAGTAACATCCTTGGGAAGCTTGGTAATGCATGGATAACTTACAACGCTACTACCAACAACCTTAGTGTGTTTTGGACATTCAAGGAAAACACAAACCCCATTTTTGCAGGCAATACTACTTCTTCTCTTACTTACCATGTTGACTTGCGAAATATTCTCCCCCAAAGGGTTACAATCGGTTTTTCTGCTTCAACTAGAATATACACTACTCGGCATGTTTTATGTTCATGGGCGTTTAATTCGACTTTGGTATCCACCAATATTAGAAGAGCTGAAAAGAAGAAAAAGATATTCTTGATACTAGTCATTGCAGTTCCTGGCTTCATTTTGACGCTTGGTGTAGTCATATGTTGGATGGTGGTATTAAGGAAGCGGAGAAACAATTACTCCGGCGAAGTCTCTTGTAAGACCCCGGAAATTCGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008289 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019220 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033674 GO:0035091 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070300 GO:0071704 GO:0071944 GO:0080090 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko01524 ko03320 ko04011 ko04068 ko04071 ko04140 ko04150 ko04151 ko04152 ko04210 ko04510 ko04660 ko04664 ko04722 ko04910 ko04919 ko04931 ko04960 ko05145 ko05160 ko05205 ko05213 ko05215 ko05223 ko05231 map01524 map03320 map04011 map04068 map04071 map04140 map04150 map04151 map04152 map04210 map04510 map04660 map04664 map04722 map04910 map04919 map04931 map04960 map05145 map05160 map05205 map05213 map05215 map05223 map05231
Pfam Domains
Protein Families
PH_3 Pkinase

Protein Analysis

226

Amino Acids

25.35

Weight (kDa)

9.43

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 6 - 175 2.3e-42 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009841)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10540 AT5G04510 AT5G04510 AT5G04510
fragaria_vesca FvH4_7g18280 FvH4_7g18280 FvH4_7g18280
malus_domestica MD07G1165300.v1.1
prunus_persica Prupe.2G204000_v2.0.a1 Prupe.2G204000_v2.0.a1
pyrus_communis pycom07g16060
rosa_chinensis RchiOBHm_Chr1g0361861
rosa_laevigata RLG00000027696
rosa_multiflora Rmu_ssc0000124.1_g000014
rosa_roxburghii Rroxscaffold_4G00294640
rosa_rugosa Rorug01G0292000
rosa_samantha Rh1AG302600 Rh1BG265700 Rh1CG283800 Rh1DG295700
rosa_wichuraiana Rw1G026810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 78
AciI CCGC 2 cut(s) 194, 625
AclWI GGATC 1 cut(s) 212
AcsI RAATTY 1 cut(s) 669
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 2 cut(s) 200, 418
AgsI TTSAA 3 cut(s) 100, 334, 444
AhlI ACTAGT 1 cut(s) 553
AjnI CCWGG 2 cut(s) 161, 568
AluBI AGCT 3 cut(s) 83, 271, 524
AluI AGCT 3 cut(s) 83, 271, 524
Alw26I GTCTC 1 cut(s) 655
AlwI GGATC 1 cut(s) 212
AlwNI CAGNNNCTG 1 cut(s) 569
AoxI GGCC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 669
AspS9I GGNCC 1 cut(s) 191
AsuC2I CCSGG 2 cut(s) 190, 665
BaeI ACNNNNGTAYC 2 cut(s) 486, 519
BccI CCATC 1 cut(s) 601
BceAI ACGGC 1 cut(s) 131
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BciT130I CCWGG 2 cut(s) 163, 570
BciVI GTATCC 1 cut(s) 514
BcnI CCSGG 2 cut(s) 190, 665
BcoDI GTCTC 1 cut(s) 655
BcuI ACTAGT 1 cut(s) 553
BfaI CTAG 2 cut(s) 447, 554
BfuI GTATCC 1 cut(s) 514
BisI GCNGC 1 cut(s) 194
BlsI GCNGC 1 cut(s) 195
Bme1390I CCNGG 4 cut(s) 163, 190, 570, 665
BmgT120I GGNCC 1 cut(s) 191
BmrFI CCNGG 4 cut(s) 163, 190, 570, 665
BmrI ACTGGG 1 cut(s) 98
BmuI ACTGGG 1 cut(s) 98
BpuMI CCSGG 2 cut(s) 190, 665
BsaBI GATNNNNATC 1 cut(s) 209
BsaJI CCNNGG 3 cut(s) 162, 262, 663
BsaXI ACNNNNNCTCC 2 cut(s) 623, 653
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 418
Bse1I ACTGG 2 cut(s) 93, 252
Bse3DI GCAATG 1 cut(s) 558
Bse8I GATNNNNATC 1 cut(s) 209
BseBI CCWGG 2 cut(s) 163, 570
BseDI CCNNGG 3 cut(s) 162, 262, 663
BseGI GGATG 2 cut(s) 258, 612
BseJI GATNNNNATC 1 cut(s) 209
BseLI CCNNNNNNNGG 2 cut(s) 200, 418
BseMI GCAATG 1 cut(s) 558
BseNI ACTGG 2 cut(s) 93, 252
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 1 cut(s) 193
BsiSI CCGG 3 cut(s) 189, 642, 665
BslI CCNNNNNNNGG 2 cut(s) 200, 418
BsmAI GTCTC 1 cut(s) 655
BsmI GAATGC 1 cut(s) 253
BsnI GGCC 1 cut(s) 193
Bsp1407I TGTACA 1 cut(s) 234
Bsp143I GATC 1 cut(s) 204
Bsp68I TCGCGA 1 cut(s) 78
BspACI CCGC 2 cut(s) 194, 625
BspANI GGCC 1 cut(s) 193
BspFNI CGCG 1 cut(s) 78
BspPI GGATC 1 cut(s) 212
BspQI GCTCTTC 1 cut(s) 514
BsrDI GCAATG 1 cut(s) 558
BsrGI TGTACA 1 cut(s) 234
BsrI ACTGG 2 cut(s) 93, 252
BssECI CCNNGG 3 cut(s) 162, 262, 663
BssMI GATC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 262
Bst2UI CCWGG 2 cut(s) 163, 570
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 2 cut(s) 229, 514
BstAUI TGTACA 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 1 cut(s) 314
BstF5I GGATG 2 cut(s) 258, 612
BstFNI CGCG 1 cut(s) 78
BstKTI GATC 1 cut(s) 207
BstMAI GTCTC 1 cut(s) 655
BstMBI GATC 1 cut(s) 204
BstNI CCWGG 2 cut(s) 163, 570
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 4 cut(s) 161, 188, 568, 663
BstUI CGCG 1 cut(s) 78
BsuI GTATCC 1 cut(s) 514
BsuRI GGCC 1 cut(s) 193
BtgZI GCGATG 1 cut(s) 36
BtsCI GGATG 2 cut(s) 258, 612
BtsIMutI CAGTG 1 cut(s) 178
BtuMI TCGCGA 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 361
CaiI CAGNNNCTG 1 cut(s) 569
Cfr13I GGNCC 1 cut(s) 191
CseI GACGC 1 cut(s) 592
Csp6I GTAC 1 cut(s) 235
CviAII CATG 4 cut(s) 282, 389, 467, 480
CviJI RGCY 8 cut(s) 54, 83, 146, 188, 193, 271, 524, 573
CviKI_1 RGCY 8 cut(s) 54, 83, 146, 188, 193, 271, 524, 573
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 1 cut(s) 314
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
Eam1104I CTCTTC 2 cut(s) 229, 514
EarI CTCTTC 2 cut(s) 229, 514
Eco130I CCWWGG 1 cut(s) 262
EcoRII CCWGG 2 cut(s) 161, 568
EcoT14I CCWWGG 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 4 cut(s) 285, 392, 470, 483
FalI AAGNNNNNCTT 2 cut(s) 530, 562
FatI CATG 4 cut(s) 281, 388, 466, 479
FauNDI CATATG 1 cut(s) 599
Fnu4HI GCNGC 1 cut(s) 194
FokI GGATG 2 cut(s) 245, 619
Fsp4HI GCNGC 1 cut(s) 194
FspBI CTAG 2 cut(s) 447, 554
GluI GCNGC 1 cut(s) 194
HaeIII GGCC 1 cut(s) 193
HapII CCGG 3 cut(s) 189, 642, 665
HgaI GACGC 1 cut(s) 592
Hin1II CATG 4 cut(s) 285, 392, 470, 483
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HindIII AAGCTT 1 cut(s) 269
HpaII CCGG 3 cut(s) 189, 642, 665
Hpy166II GTNNAC 3 cut(s) 235, 237, 394
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 2 cut(s) 77, 547
Hpy8I GTNNAC 3 cut(s) 235, 237, 394
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4V TGCA 3 cut(s) 281, 359, 563
HpyF3I CTNAG 1 cut(s) 314
Hsp92II CATG 4 cut(s) 285, 392, 470, 483
Kzo9I GATC 1 cut(s) 204
LguI GCTCTTC 1 cut(s) 514
LmnI GCTCC 1 cut(s) 49
MaeI CTAG 2 cut(s) 447, 554
MaeIII GTNAC 2 cut(s) 254, 421
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 4 cut(s) 216, 366, 531, 544
MfeI CAATTG 1 cut(s) 241
MluCI AATT 5 cut(s) 27, 241, 490, 634, 669
MmeI TCCRAC 2 cut(s) 89, 584
Mph1103I ATGCAT 1 cut(s) 283
MseI TTAA 3 cut(s) 489, 617, 679
MspI CCGG 3 cut(s) 189, 642, 665
MspR9I CCNGG 4 cut(s) 163, 190, 570, 665
MunI CAATTG 1 cut(s) 241
Mva1269I GAATGC 1 cut(s) 253
MvaI CCWGG 2 cut(s) 163, 570
MvnI CGCG 1 cut(s) 78
NciI CCSGG 2 cut(s) 190, 665
NdeI CATATG 1 cut(s) 599
NdeII GATC 1 cut(s) 204
NlaIII CATG 4 cut(s) 285, 392, 470, 483
NmeAIII GCCGAG 1 cut(s) 442
NruI TCGCGA 1 cut(s) 78
NsiI ATGCAT 1 cut(s) 283
NspI RCATGY 1 cut(s) 470
PciSI GCTCTTC 1 cut(s) 514
PctI GAATGC 1 cut(s) 253
PkrI GCNGC 1 cut(s) 195
Psp6I CCWGG 2 cut(s) 161, 568
PspGI CCWGG 2 cut(s) 161, 568
PspPI GGNCC 1 cut(s) 191
PstNI CAGNNNCTG 1 cut(s) 569
RruI TCGCGA 1 cut(s) 78
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SapI GCTCTTC 1 cut(s) 514
SaqAI TTAA 3 cut(s) 489, 617, 679
SatI GCNGC 1 cut(s) 194
Sau3AI GATC 1 cut(s) 204
Sau96I GGNCC 1 cut(s) 191
ScrFI CCNGG 4 cut(s) 163, 190, 570, 665
SetI ASST 5 cut(s) 85, 164, 273, 315, 526
SpeI ACTAGT 1 cut(s) 553
Sse9I AATT 5 cut(s) 27, 241, 490, 634, 669
SsiI CCGC 2 cut(s) 194, 625
SspI AATATT 2 cut(s) 406, 514
SspMI CTAG 2 cut(s) 447, 554
StyD4I CCNGG 4 cut(s) 161, 188, 568, 663
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 1 cut(s) 173
TaqI TCGA 3 cut(s) 156, 207, 494
TasI AATT 5 cut(s) 27, 241, 490, 634, 669
TatI WGTACW 1 cut(s) 234
TauI GCSGC 1 cut(s) 196
Tru1I TTAA 3 cut(s) 489, 617, 679
Tru9I TTAA 3 cut(s) 489, 617, 679
TscAI CASTG 1 cut(s) 178
TspDTI ATGAA 4 cut(s) 39, 231, 468, 565
TspRI CASTG 1 cut(s) 178
XapI RAATTY 1 cut(s) 669
XceI RCATGY 1 cut(s) 470
XspI CTAG 2 cut(s) 447, 554
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.