Rorug02G0042600

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010246
Physical Location & Seq
Reverse (-)
3318922 .. 3321701
2780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0042600.1

Sequence Viewer

Length: 420 bp
ATGGAAGCTGCACTTAAGAAAGGTAAAAATGTGTCTTTTGTTGAGAATTGGAGCGTTATGCATCAACATCATGATGGTCAATGGATCAACGAAGCAGCTGAACAAACAGGGTTAGATATCTTGGCAAATGGCGTTGGGGTTGCAAAGGGTAGAGGCATTCGCGGTCTGGGCTATGGTCCACGGAAGGAACCCGTCCTTTATTCTGAGAGTGATAAATCTACAAATACTTCCGTGACAGAACAAAAGGTGGTTGAGCTGACAGCCACAGTGGAAAAGCTTTTGAGGCATATCAATCACATAGAAGAGCAACTTGCTGCTGTTAAAGGGTATATTATTCATCATTCTAATGATGAAGATGATTATGATAATGGGGATGATGATGTGAATATCTATCGGGATGAAGATGAGGGTGCAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

139

Amino Acids

15.46

Weight (kDa)

4.82

Isoelectric Point (pI)

31.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 162
AciI CCGC 1 cut(s) 162
AclWI GGATC 1 cut(s) 92
AflII CTTAAG 1 cut(s) 14
AluBI AGCT 4 cut(s) 8, 98, 256, 277
AluI AGCT 4 cut(s) 8, 98, 256, 277
AlwI GGATC 1 cut(s) 92
ApeKI GCWGC 3 cut(s) 8, 95, 314
AspS9I GGNCC 1 cut(s) 176
AvaII GGWCC 1 cut(s) 176
BbvI GCAGC 2 cut(s) 107, 301
BccI CCATC 1 cut(s) 68
BfaI CTAG 1 cut(s) 418
BfrI CTTAAG 1 cut(s) 14
BisI GCNGC 3 cut(s) 9, 96, 315
BlsI GCNGC 3 cut(s) 10, 97, 316
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 189
BmsI GCATC 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 179
BseGI GGATG 2 cut(s) 379, 403
BseMII CTCAG 1 cut(s) 195
BseXI GCAGC 2 cut(s) 107, 301
Bsh1236I CGCG 1 cut(s) 162
BsmI GAATGC 1 cut(s) 156
Bsp143I GATC 1 cut(s) 84
BspACI CCGC 1 cut(s) 162
BspCNI CTCAG 1 cut(s) 196
BspFNI CGCG 1 cut(s) 162
BspHI TCATGA 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 189
BspPI GGATC 1 cut(s) 92
BspQI GCTCTTC 1 cut(s) 297
BspTI CTTAAG 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 297
BstAFI CTTAAG 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 204
BstDSI CCRYGG 1 cut(s) 179
BstF5I GGATG 2 cut(s) 379, 403
BstFNI CGCG 1 cut(s) 162
BstKTI GATC 1 cut(s) 87
BstMBI GATC 1 cut(s) 84
BstMWI GCNNNNNNNGC 2 cut(s) 168, 283
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 107, 301
BtgI CCRYGG 1 cut(s) 179
BtsCI GGATG 2 cut(s) 379, 403
BtsIMutI CAGTG 1 cut(s) 273
CciI TCATGA 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 176
CviAII CATG 1 cut(s) 71
CviJI RGCY 6 cut(s) 8, 98, 171, 256, 263, 277
CviKI_1 RGCY 6 cut(s) 8, 98, 171, 256, 263, 277
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco32I GATATC 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 176
EcoRV GATATC 1 cut(s) 118
EcoT22I ATGCAT 1 cut(s) 63
FaeI CATG 1 cut(s) 74
FaiI YATR 7 cut(s) 59, 72, 174, 288, 299, 330, 363
FalI AAGNNNNNCTT 3 cut(s) 29, 294, 326
FatI CATG 1 cut(s) 70
Fnu4HI GCNGC 3 cut(s) 9, 96, 315
FokI GGATG 2 cut(s) 386, 410
Fsp4HI GCNGC 3 cut(s) 9, 96, 315
FspBI CTAG 1 cut(s) 418
GluI GCNGC 3 cut(s) 9, 96, 315
Hin1II CATG 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 275
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 2 cut(s) 71, 395
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 4 cut(s) 11, 61, 143, 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 283
HpyF3I CTNAG 1 cut(s) 204
Hsp92II CATG 1 cut(s) 74
Kzo9I GATC 1 cut(s) 84
LguI GCTCTTC 1 cut(s) 297
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 2 cut(s) 93, 152
Lsp1109I GCAGC 2 cut(s) 107, 301
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 418
MaeIII GTNAC 1 cut(s) 232
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 3 cut(s) 314, 365, 413
MluCI AATT 1 cut(s) 46
MnlI CCTC 3 cut(s) 146, 276, 400
Mph1103I ATGCAT 1 cut(s) 63
MseI TTAA 2 cut(s) 15, 321
MslI CAYNNNNRTG 2 cut(s) 72, 345
MspA1I CMGCKG 1 cut(s) 98
MspCI CTTAAG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 156
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 2 cut(s) 168, 283
NdeII GATC 1 cut(s) 84
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 1 cut(s) 232
NsiI ATGCAT 1 cut(s) 63
PagI TCATGA 1 cut(s) 70
PciSI GCTCTTC 1 cut(s) 297
PctI GAATGC 1 cut(s) 156
PkrI GCNGC 3 cut(s) 10, 97, 316
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 1 cut(s) 176
PvuII CAGCTG 1 cut(s) 98
RseI CAYNNNNRTG 2 cut(s) 72, 345
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 2 cut(s) 15, 321
SatI GCNGC 3 cut(s) 9, 96, 315
Sau3AI GATC 1 cut(s) 84
Sau96I GGNCC 1 cut(s) 176
SetI ASST 6 cut(s) 10, 25, 100, 249, 258, 279
SfaNI GCATC 1 cut(s) 70
SinI GGWCC 1 cut(s) 176
SmiMI CAYNNNNRTG 2 cut(s) 72, 345
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 1 cut(s) 46
SsiI CCGC 1 cut(s) 162
SspMI CTAG 1 cut(s) 418
TaaI ACNGT 1 cut(s) 268
TasI AATT 1 cut(s) 46
Tru1I TTAA 2 cut(s) 15, 321
Tru9I TTAA 2 cut(s) 15, 321
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 3 cut(s) 8, 95, 314
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 3 cut(s) 326, 366, 414
TspGWI ACGGA 2 cut(s) 196, 220
TspRI CASTG 1 cut(s) 273
Vha464I CTTAAG 1 cut(s) 14
VpaK11BI GGWCC 1 cut(s) 176
XspI CTAG 1 cut(s) 418
Zsp2I ATGCAT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.