Rorug02G0195800

Sulfate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015890
Physical Location & Seq
Reverse (-)
18252065 .. 18253356
1292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0195800.1

Sequence Viewer

Length: 1146 bp
ATGAGGGAGTTGATTCGAAAGCAATACAAGAGCTGGACATCGAAGGAGGAAGAAGCCCTAGCAGCCGGGGTGCGTAAGTACGGGAGCGGCAACTGGAAAACCATCCTCAAATATTCCAAATTTGCTCGTTACCTCGCTCGGAAGTCATGCGGTGACCTGTGGAAGAAATGGAGGAGAATGACATTTAGGGTTTCCGATGAGAAACTGAAGATCATGTCTCCCAAGGTAAAGAAGGTTGTGGCTGCCCGCCTGGAGGAGGCCATTAATGATGGGAAAAGCTCTGCTTTTGCTGAAAGAAGAGAGAGGGGTATAACGGGAAGCGGTTGGACGGTGGAGGAGGAAGAAGCCCTAGCCGCCGGGGTGGAAAAGTATGGGATGAGCAAGTGGAAGCACATTCTTGAAGATCCCGAATTCGGTCCTGTCCTCGCTATCCATCCGTGTACATCTATGGCGGATAAGTGGAGGAACTTGACTGACAGTGTTTCCGAGGAAAAGCTGAGGAGGATGTCTTATAAGGTAAGGAAAGTTGTGGATGCTTCCTTGCTCAGCAAGATTAATGATGATCAGGGGGAGGAGACCGAAAGGGTTTCAAAGATGGAAGAAGACACGGAAGAGAGCACTACGTCAACAAAGGTAAGGAAGGTTGTGGATGAGGTTCAGAACTCTGCTAATCCTAATGAGGCAGTGAAGGAGACGGAAAGGGTTCCGGAGATGGTAGAAGAAGATGAGACCCTAATGATGGATGTTGAAAGTTCTGCTGATCCTGCTGAAGCAGTTAAGGAGAATGAAAGGATTTTGAAAATGAAAGAAGATGCCAAGTCTATGCTACTGTTAGCGAAAGAGATTTGGGGACATTGCTCGACAGAAGACACCAATCGAGTTTCTGCTCCTGCTTTTCCAGAAGCAGTGAAGGAGAGCAAAATGATTTTGGAGATTGCAGAAGACATTGATCGATTTTCTGCTGCTCCTGCTCCACAAGCGGAGAAAAAGACCAAAATAATTTCAGAAATGGAAGAAGACACCAATCGAGTCCCTGCTCCTGCTCCTCCAAAAGCAGTTGAAGAGACCAAAAGGATTTCGGAGACAGCAGAAGATACCAAATCCATGCTACTGTTCATGAATCAGATTTATGAAAGATTCACGTAG

Protein Analysis

381

Amino Acids

43.45

Weight (kDa)

5.52

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 11 - 57 1.9e-06 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 12 - 61 5.3e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10180
fragaria_vesca FvH4_1g21480
malus_domestica MD01G1024600.v1.1
prunus_persica Prupe.6G180000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0115361
rosa_laevigata RLG00000018179
rosa_multiflora Rmu_sc0001897.1_g000007
rosa_roxburghii Rroxscaffold_2G00130850
rosa_rugosa Rorug02G0195700 Rorug02G0195800
rosa_samantha Rh2AG254200 Rh2BG264400 Rh2CG258900 Rh2DG262300
rosa_wichuraiana Rw2G019850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 513
AccBSI CCGCTC 1 cut(s) 87
AccIII TCCGGA 1 cut(s) 706
AciI CCGC 7 cut(s) 87, 150, 247, 321, 354, 452, 980
AclWI GGATC 2 cut(s) 398, 755
AcsI RAATTY 2 cut(s) 119, 410
AcuI CTGAAG 2 cut(s) 227, 789
AfaI GTAC 2 cut(s) 80, 442
AfiI CCNNNNNNNGG 4 cut(s) 253, 256, 413, 739
AgsI TTSAA 5 cut(s) 401, 591, 749, 799, 1061
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 3 cut(s) 33, 279, 496
AluI AGCT 3 cut(s) 33, 279, 496
Alw21I GWGCWC 1 cut(s) 620
Alw26I GTCTC 6 cut(s) 222, 569, 686, 722, 1058, 1076
AlwI GGATC 2 cut(s) 398, 755
Aor13HI TCCGGA 1 cut(s) 706
AoxI GGCC 1 cut(s) 258
ApeKI GCWGC 3 cut(s) 62, 242, 962
ApoI RAATTY 2 cut(s) 119, 410
AseI ATTAAT 2 cut(s) 264, 555
Asp700I GAANNNNTTC 1 cut(s) 702
AspS9I GGNCC 1 cut(s) 416
AsuC2I CCSGG 2 cut(s) 67, 358
AsuHPI GGTGA 1 cut(s) 164
AsuII TTCGAA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 416
BbsI GAAGAC 4 cut(s) 609, 873, 948, 1023
Bbv12I GWGCWC 1 cut(s) 620
BbvCI CCTCAGC 1 cut(s) 497
BbvI GCAGC 3 cut(s) 74, 229, 949
BccI CCATC 6 cut(s) 110, 263, 441, 589, 706, 733
BciT130I CCWGG 1 cut(s) 251
BclI TGATCA 1 cut(s) 562
BcnI CCSGG 2 cut(s) 67, 358
BcoDI GTCTC 6 cut(s) 222, 569, 686, 722, 1058, 1076
BfaI CTAG 2 cut(s) 59, 350
BisI GCNGC 5 cut(s) 63, 88, 243, 354, 963
BlpI GCTNAGC 1 cut(s) 545
BlsI GCNGC 5 cut(s) 64, 89, 244, 355, 964
Bme1390I CCNGG 3 cut(s) 67, 251, 358
Bme18I GGWCC 1 cut(s) 416
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 1 cut(s) 705
BmrFI CCNGG 3 cut(s) 67, 251, 358
BmsI GCATC 2 cut(s) 523, 802
BpiI GAAGAC 4 cut(s) 609, 873, 948, 1023
BpmI CTGGAG 1 cut(s) 272
Bpu10I CCTNAGC 1 cut(s) 497
Bpu1102I GCTNAGC 1 cut(s) 545
Bpu14I TTCGAA 1 cut(s) 16
BpuMI CCSGG 2 cut(s) 67, 358
Bsa29I ATCGAT 1 cut(s) 952
BsaAI YACGTR 1 cut(s) 1143
BsaI GGTCTC 3 cut(s) 569, 722, 1058
BsaJI CCNNGG 4 cut(s) 66, 222, 357, 486
BsaWI WCCGGW 1 cut(s) 706
Bsc4I CCNNNNNNNGG 4 cut(s) 253, 256, 413, 739
Bse1I ACTGG 1 cut(s) 98
Bse3DI GCAATG 1 cut(s) 853
BseAI TCCGGA 1 cut(s) 706
BseBI CCWGG 1 cut(s) 251
BseCI ATCGAT 1 cut(s) 952
BseDI CCNNGG 4 cut(s) 66, 222, 357, 486
BseGI GGATG 7 cut(s) 102, 381, 433, 510, 538, 655, 748
BseLI CCNNNNNNNGG 4 cut(s) 253, 256, 413, 739
BseMI GCAATG 1 cut(s) 853
BseMII CTCAG 2 cut(s) 488, 559
BseNI ACTGG 1 cut(s) 98
BseRI GAGGAG 6 cut(s) 187, 269, 350, 514, 587, 1035
BseXI GCAGC 3 cut(s) 74, 229, 949
BshFI GGCC 1 cut(s) 260
BshVI ATCGAT 1 cut(s) 952
BsiHKAI GWGCWC 1 cut(s) 620
BsiSI CCGG 3 cut(s) 66, 357, 707
BslFI GGGAC 2 cut(s) 864, 1016
BslI CCNNNNNNNGG 4 cut(s) 253, 256, 413, 739
BsmAI GTCTC 6 cut(s) 222, 569, 686, 722, 1058, 1076
BsmBI CGTCTC 1 cut(s) 686
BsmFI GGGAC 2 cut(s) 864, 1016
BsnI GGCC 1 cut(s) 260
Bso31I GGTCTC 3 cut(s) 569, 722, 1058
Bsp119I TTCGAA 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 620
Bsp13I TCCGGA 1 cut(s) 706
Bsp1407I TGTACA 1 cut(s) 440
Bsp143I GATC 5 cut(s) 210, 403, 562, 760, 949
Bsp1720I GCTNAGC 1 cut(s) 545
BspACI CCGC 7 cut(s) 87, 150, 247, 321, 354, 452, 980
BspANI GGCC 1 cut(s) 260
BspCNI CTCAG 2 cut(s) 489, 558
BspDI ATCGAT 1 cut(s) 952
BspEI TCCGGA 1 cut(s) 706
BspHI TCATGA 1 cut(s) 1116
BspLI GGNNCC 1 cut(s) 705
BspPI GGATC 2 cut(s) 398, 755
BspT104I TTCGAA 1 cut(s) 16
BspTNI GGTCTC 3 cut(s) 569, 722, 1058
BsrBI CCGCTC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 853
BsrGI TGTACA 1 cut(s) 440
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 4 cut(s) 66, 222, 357, 486
BssMI GATC 5 cut(s) 210, 403, 562, 760, 949
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 4 cut(s) 331, 479, 831, 1113
Bst6I CTCTTC 3 cut(s) 292, 606, 1056
BstAUI TGTACA 1 cut(s) 440
BstBAI YACGTR 1 cut(s) 1143
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 2 cut(s) 497, 545
BstEII GGTNACC 1 cut(s) 152
BstENI CCTNNNNNAGG 1 cut(s) 254
BstF5I GGATG 7 cut(s) 102, 381, 433, 510, 538, 655, 748
BstKTI GATC 5 cut(s) 213, 406, 565, 763, 952
BstMAI GTCTC 6 cut(s) 222, 569, 686, 722, 1058, 1076
BstMBI GATC 5 cut(s) 210, 403, 562, 760, 949
BstMWI GCNNNNNNNGC 5 cut(s) 62, 353, 764, 968, 977
BstNI CCWGG 1 cut(s) 251
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 3 cut(s) 65, 249, 356
BstV1I GCAGC 3 cut(s) 74, 229, 949
BstV2I GAAGAC 4 cut(s) 609, 873, 948, 1023
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
Bsu15I ATCGAT 1 cut(s) 952
BsuRI GGCC 1 cut(s) 260
BsuTUI ATCGAT 1 cut(s) 952
BtsCI GGATG 7 cut(s) 102, 381, 433, 510, 538, 655, 748
BtsI GCAGTG 2 cut(s) 690, 912
BtsIMutI CAGTG 3 cut(s) 484, 690, 912
Cac8I GCNNGC 1 cut(s) 247
CciI TCATGA 1 cut(s) 1116
Cfr13I GGNCC 1 cut(s) 416
ClaI ATCGAT 1 cut(s) 952
Csp6I GTAC 2 cut(s) 79, 441
CviAII CATG 4 cut(s) 147, 214, 1105, 1117
CviJI RGCY 9 cut(s) 33, 56, 65, 242, 260, 279, 347, 353, 496
CviKI_1 RGCY 9 cut(s) 33, 56, 65, 242, 260, 279, 347, 353, 496
CviQI GTAC 2 cut(s) 79, 441
DdeI CTNAG 2 cut(s) 497, 545
DpnI GATC 5 cut(s) 212, 405, 564, 762, 951
DpnII GATC 5 cut(s) 210, 403, 562, 760, 949
Eam1104I CTCTTC 3 cut(s) 292, 606, 1056
EarI CTCTTC 3 cut(s) 292, 606, 1056
EciI GGCGGA 1 cut(s) 467
Eco130I CCWWGG 1 cut(s) 222
Eco31I GGTCTC 3 cut(s) 569, 722, 1058
Eco47I GGWCC 1 cut(s) 416
Eco57I CTGAAG 2 cut(s) 227, 789
Eco91I GGTNACC 1 cut(s) 152
EcoNI CCTNNNNNAGG 1 cut(s) 254
EcoO65I GGTNACC 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
Esp3I CGTCTC 1 cut(s) 686
FaeI CATG 4 cut(s) 150, 217, 1108, 1120
FalI AAGNNNNNCTT 2 cut(s) 268, 300
FaqI GGGAC 2 cut(s) 864, 1016
FatI CATG 4 cut(s) 146, 213, 1104, 1116
FauI CCCGC 1 cut(s) 254
FbaI TGATCA 1 cut(s) 562
Fnu4HI GCNGC 5 cut(s) 63, 88, 243, 354, 963
FokI GGATG 7 cut(s) 89, 388, 420, 517, 545, 662, 755
Fsp4HI GCNGC 5 cut(s) 63, 88, 243, 354, 963
FspBI CTAG 2 cut(s) 59, 350
GluI GCNGC 5 cut(s) 63, 88, 243, 354, 963
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 1 cut(s) 260
HapII CCGG 3 cut(s) 66, 357, 707
Hin1II CATG 4 cut(s) 150, 217, 1108, 1120
HincII GTYRAC 1 cut(s) 627
HindII GTYRAC 1 cut(s) 627
HinfI GANTC 4 cut(s) 13, 1029, 1120, 1137
HpaII CCGG 3 cut(s) 66, 357, 707
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 2 cut(s) 441, 627
Hpy188I TCNGA 7 cut(s) 141, 196, 487, 660, 1006, 1081, 1125
Hpy188III TCNNGA 5 cut(s) 398, 407, 707, 899, 1117
Hpy8I GTNNAC 2 cut(s) 441, 627
HpyAV CCTTC 5 cut(s) 37, 226, 634, 682, 904
HpyCH4III ACNGT 4 cut(s) 331, 479, 831, 1113
HpyCH4IV ACGT 2 cut(s) 623, 1142
HpyCH4V TGCA 1 cut(s) 938
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 353, 764, 968, 977
HpyF3I CTNAG 2 cut(s) 497, 545
HpySE526I ACGT 2 cut(s) 623, 1142
Hsp92II CATG 4 cut(s) 150, 217, 1108, 1120
Kpn2I TCCGGA 1 cut(s) 706
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 5 cut(s) 210, 403, 562, 760, 949
LmnI GCTCC 6 cut(s) 84, 892, 970, 976, 1042, 1048
Lsp1109I GCAGC 3 cut(s) 74, 229, 949
LweI GCATC 2 cut(s) 523, 802
MaeI CTAG 2 cut(s) 59, 350
MaeII ACGT 2 cut(s) 623, 1142
MaeIII GTNAC 2 cut(s) 128, 152
MalI GATC 5 cut(s) 212, 405, 564, 762, 951
MbiI CCGCTC 1 cut(s) 87
MboI GATC 5 cut(s) 210, 403, 562, 760, 949
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 1 cut(s) 620
MluCI AATT 3 cut(s) 119, 410, 999
MlyI GAGTC 1 cut(s) 1038
MmeI TCCRAC 1 cut(s) 305
MroI TCCGGA 1 cut(s) 706
MroXI GAANNNNTTC 1 cut(s) 702
MseI TTAA 3 cut(s) 264, 555, 777
MspI CCGG 3 cut(s) 66, 357, 707
MspR9I CCNGG 3 cut(s) 67, 251, 358
MvaI CCWGG 1 cut(s) 251
MwoI GCNNNNNNNGC 5 cut(s) 62, 353, 764, 968, 977
NciI CCSGG 2 cut(s) 67, 358
NdeII GATC 5 cut(s) 210, 403, 562, 760, 949
NlaIII CATG 4 cut(s) 150, 217, 1108, 1120
NlaIV GGNNCC 1 cut(s) 705
NmuCI GTSAC 1 cut(s) 152
NspV TTCGAA 1 cut(s) 16
PagI TCATGA 1 cut(s) 1116
PdmI GAANNNNTTC 1 cut(s) 702
PfeI GAWTC 3 cut(s) 13, 1120, 1137
PkrI GCNGC 5 cut(s) 64, 89, 244, 355, 964
PleI GAGTC 1 cut(s) 1037
PpsI GAGTC 1 cut(s) 1037
Ppu21I YACGTR 1 cut(s) 1143
PshBI ATTAAT 2 cut(s) 264, 555
PsiI TTATAA 1 cut(s) 513
Psp6I CCWGG 1 cut(s) 249
PspEI GGTNACC 1 cut(s) 152
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 705
PspPI GGNCC 1 cut(s) 416
PsuI RGATCY 1 cut(s) 403
RsaI GTAC 2 cut(s) 80, 442
RsaNI GTAC 2 cut(s) 79, 441
SaqAI TTAA 3 cut(s) 264, 555, 777
SatI GCNGC 5 cut(s) 63, 88, 243, 354, 963
Sau3AI GATC 5 cut(s) 210, 403, 562, 760, 949
Sau96I GGNCC 1 cut(s) 416
SchI GAGTC 1 cut(s) 1038
ScrFI CCNGG 3 cut(s) 67, 251, 358
SduI GDGCHC 1 cut(s) 620
SfaNI GCATC 2 cut(s) 523, 802
SfuI TTCGAA 1 cut(s) 16
SinI GGWCC 1 cut(s) 416
Sse9I AATT 3 cut(s) 119, 410, 999
SsiI CCGC 7 cut(s) 87, 150, 247, 321, 354, 452, 980
SspI AATATT 1 cut(s) 113
SspMI CTAG 2 cut(s) 59, 350
StyD4I CCNGG 3 cut(s) 65, 249, 356
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 4 cut(s) 331, 479, 831, 1113
TaiI ACGT 2 cut(s) 626, 1145
TaqI TCGA 6 cut(s) 16, 41, 860, 877, 952, 1027
TaqII GACCGA 2 cut(s) 404, 593
TasI AATT 3 cut(s) 119, 410, 999
TatI WGTACW 1 cut(s) 440
TauI GCSGC 2 cut(s) 90, 356
TfiI GAWTC 3 cut(s) 13, 1120, 1137
Tru1I TTAA 3 cut(s) 264, 555, 777
Tru9I TTAA 3 cut(s) 264, 555, 777
TscAI CASTG 3 cut(s) 484, 690, 912
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 3 cut(s) 62, 242, 962
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 5 cut(s) 801, 818, 1105, 1133, 1146
TspGWI ACGGA 3 cut(s) 426, 623, 710
TspRI CASTG 3 cut(s) 484, 690, 912
VpaK11BI GGWCC 1 cut(s) 416
VspI ATTAAT 2 cut(s) 264, 555
XagI CCTNNNNNAGG 1 cut(s) 254
XapI RAATTY 2 cut(s) 119, 410
XmnI GAANNNNTTC 1 cut(s) 702
XspI CTAG 2 cut(s) 59, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.