Rorug02G0234800

ABC transporter G family member

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
23449244 .. 23449696
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0234800.1

Sequence Viewer

Length: 453 bp
ATGGCCATTTTAGGCTGGCTAGTCCAACTAAAGTACACATCTGCGACTGCATCTCCATTCGTCACCGACTATGTTTCCATTCGAATGTTTATAGTCGCTCTCTTGGTTTACTTTGGGTTCTTGACTGTGGAGATATTATTAGCCCATGCTCCCAATTCAGATTTGGGGGAGTTCATCAACAACATTATCTTCTTGTTCGGAACGCTTGCCTCGTTCTTGCTTCTGCTTATCCTCGTTCGAGATTTCGGGTTGTTTGCCCTCATCTTGTGGACGATTTATCTTGTGAGGGATGTTGCAACTAAGAAGTCGTACAGGAATGCAGTTTGTGATGTCTTCAACAAAGTAAAAGAGATGATTAATGGTCACTTGGTGGAGATTAATGGTGTACAATTCCAACCTCCACCACATATCGTTGTACAAATCCAAGATGCGGGAGAACCGAATGTTCTTTGA

Protein Analysis

150

Amino Acids

16.85

Weight (kDa)

5.83

Isoelectric Point (pI)

31.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G13610
fragaria_vesca FvH4_1g24520
malus_domestica MD15G1134300.v1.1
prunus_persica Prupe.4G272400_v2.0.a1
pyrus_communis pycom15g12090
rosa_chinensis RchiOBHm_Chr2g0121921
rosa_laevigata RLG00000018633
rosa_multiflora Rmu_co8491703.1_g000001 Rmu_sc0003880.1_g000031
rosa_roxburghii Rroxscaffold_2G00122210
rosa_rugosa Rorug02G0234800
rosa_samantha Rh2AG291600 Rh2BG302100 Rh2CG280900 Rh2DG316100
rosa_wichuraiana Rw2G023400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 431
AcoI YGGCCR 1 cut(s) 3
AdeI CACNNNGTG 1 cut(s) 370
AfaI GTAC 4 cut(s) 35, 311, 387, 417
AfiI CCNNNNNNNGG 1 cut(s) 430
AgsI TTSAA 1 cut(s) 337
AoxI GGCC 1 cut(s) 3
AseI ATTAAT 2 cut(s) 357, 378
AsuHPI GGTGA 1 cut(s) 55
AsuII TTCGAA 1 cut(s) 82
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 325
BfaI CTAG 1 cut(s) 20
BmsI GCATC 2 cut(s) 59, 418
BpiI GAAGAC 1 cut(s) 325
Bpu14I TTCGAA 1 cut(s) 82
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 1 cut(s) 430
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 1 cut(s) 430
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 430
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 82
Bsp1407I TGTACA 2 cut(s) 385, 415
BspACI CCGC 1 cut(s) 431
BspANI GGCC 1 cut(s) 5
BspT104I TTCGAA 1 cut(s) 82
BsrGI TGTACA 2 cut(s) 385, 415
Bst4CI ACNGT 1 cut(s) 127
BstAUI TGTACA 2 cut(s) 385, 415
BstBI TTCGAA 1 cut(s) 82
BstC8I GCNNGC 2 cut(s) 17, 207
BstDEI CTNAG 1 cut(s) 300
BstF5I GGATG 1 cut(s) 295
BstV2I GAAGAC 1 cut(s) 325
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 295
Cac8I GCNNGC 2 cut(s) 17, 207
Csp6I GTAC 4 cut(s) 34, 310, 386, 416
CviAII CATG 1 cut(s) 146
CviJI RGCY 4 cut(s) 5, 15, 19, 143
CviKI_1 RGCY 4 cut(s) 5, 15, 19, 143
CviQI GTAC 4 cut(s) 34, 310, 386, 416
DdeI CTNAG 1 cut(s) 300
DraIII CACNNNGTG 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 3
FaeI CATG 1 cut(s) 149
FaiI YATR 4 cut(s) 72, 92, 147, 408
FatI CATG 1 cut(s) 145
FauI CCCGC 1 cut(s) 424
FokI GGATG 1 cut(s) 302
FspBI CTAG 1 cut(s) 20
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 149
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 4 cut(s) 36, 109, 270, 386
Hpy188I TCNGA 2 cut(s) 160, 200
Hpy188III TCNNGA 2 cut(s) 121, 239
Hpy8I GTNNAC 4 cut(s) 36, 109, 270, 386
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 3 cut(s) 50, 296, 320
HpyF3I CTNAG 1 cut(s) 300
Hsp92II CATG 1 cut(s) 149
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 1 cut(s) 298
LweI GCATC 2 cut(s) 59, 418
MaeI CTAG 1 cut(s) 20
MaeIII GTNAC 2 cut(s) 61, 362
MboII GAAGA 2 cut(s) 181, 325
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 154, 389
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 49, 418
MnlI CCTC 5 cut(s) 220, 242, 269, 279, 408
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 357, 378
MslI CAYNNNNRTG 1 cut(s) 83
Msp20I TGGCCA 1 cut(s) 5
Mva1269I GAATGC 1 cut(s) 322
NlaIII CATG 1 cut(s) 149
NmuCI GTSAC 2 cut(s) 61, 362
NspV TTCGAA 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 209
PctI GAATGC 1 cut(s) 322
PshBI ATTAAT 2 cut(s) 357, 378
RsaI GTAC 4 cut(s) 35, 311, 387, 417
RsaNI GTAC 4 cut(s) 34, 310, 386, 416
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 2 cut(s) 357, 378
SetI ASST 1 cut(s) 400
SfaNI GCATC 2 cut(s) 59, 418
SfuI TTCGAA 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 83
Sse9I AATT 2 cut(s) 154, 389
SsiI CCGC 1 cut(s) 431
SspMI CTAG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 2 cut(s) 82, 238
TasI AATT 2 cut(s) 154, 389
TatI WGTACW 3 cut(s) 33, 385, 415
Tru1I TTAA 2 cut(s) 357, 378
Tru9I TTAA 2 cut(s) 357, 378
TseFI GTSAC 2 cut(s) 61, 362
Tsp45I GTSAC 2 cut(s) 61, 362
TspDTI ATGAA 1 cut(s) 163
VspI ATTAAT 2 cut(s) 357, 378
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.