Rorug02G0269200

Protein cornichon homolog 4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0020526
Physical Location & Seq
Forward (+)
28468649 .. 28472198
3550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0269200.1

Sequence Viewer

Length: 582 bp
ATGGCTACTGCAGTGTCTAACTCAACCACTAGTAACACAGAAAGTAATGCATCCACTTCAAAATTTGAAGAGGAACTTAAAGTTGCTTCAAGGTTGCGAAAATTTACTTTTAACGATCTTAAATTGGCAACAAGAAATTTCAGACCTGAAAGTCTTCTTGGTGAAGGTGGTTTTGGTTGTGTGTTCAAGGGGTGGATAGAAGAAAATGGAACTGCTCCAGTCAAACCTGGCACAGGACTTACTGTTGTGGTTAAAACTCTTAATCATGATGGGCTTCAGGGTCATAAAGAATGGCTGGCTGAAGTAAATTTCCTTGGTGACCTTGTCCATCCAAACTTGGTAAAACTTATTGGATACTGCATTGAAGATGATCAAAGGCTGCTAGTGTATGAGTTCATGCCTCGAGGGAGCTTGGAGAACCACCTATTTAGGAGGTCCCTGCCTCTTCCATGGTCTATTAGAATGAAAATTGCATTGGGTGCGGCAAAAGGTCTTGCTTTTCTTCATGAGGAGGCAGAAAGACCTGTGATTTATCGTGACTTTAAAACCTCCAACATCTTATTGGACGCAGTATGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cornichon

Protein Analysis

193

Amino Acids

21.51

Weight (kDa)

6.97

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 50 - 189 1.8e-20 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 51 - 189 2e-24 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020526)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0490921 RchiOBHm_Chr3g0492201
rosa_rugosa Rorug02G0268200 Rorug02G0268300 Rorug02G0269200 Rorug02G0269300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 150
AbsI CCTCGAGG 1 cut(s) 402
AciI CCGC 1 cut(s) 482
AcsI RAATTY 4 cut(s) 62, 101, 136, 307
AcuI CTGAAG 2 cut(s) 260, 321
AfiI CCNNNNNNNGG 1 cut(s) 233
AgsI TTSAA 5 cut(s) 60, 68, 90, 187, 365
AhlI ACTAGT 1 cut(s) 29
AjnI CCWGG 1 cut(s) 226
AjuI GAANNNNNNNTTGG 6 cut(s) 141, 156, 173, 188, 458, 490
AluBI AGCT 1 cut(s) 411
AluI AGCT 1 cut(s) 411
Ama87I CYCGRG 1 cut(s) 402
ApeKI GCWGC 1 cut(s) 379
ApoI RAATTY 4 cut(s) 62, 101, 136, 307
Asp700I GAANNNNTTC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 435
AsuHPI GGTGA 2 cut(s) 173, 329
AvaI CYCGRG 1 cut(s) 402
AvaII GGWCC 1 cut(s) 435
BbsI GAAGAC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 366
BccI CCATC 2 cut(s) 263, 336
BciT130I CCWGG 1 cut(s) 228
BciVI GTATCC 1 cut(s) 347
BclI TGATCA 1 cut(s) 370
BcuI ACTAGT 1 cut(s) 29
BfaI CTAG 2 cut(s) 30, 383
BfmI CTRYAG 1 cut(s) 9
BfuI GTATCC 1 cut(s) 347
BisI GCNGC 2 cut(s) 380, 483
BlsI GCNGC 2 cut(s) 381, 484
Bme1390I CCNGG 1 cut(s) 228
Bme18I GGWCC 1 cut(s) 435
BmeT110I CYCGRG 1 cut(s) 402
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 1 cut(s) 437
BmrFI CCNGG 1 cut(s) 228
BmsI GCATC 1 cut(s) 59
BpiI GAAGAC 1 cut(s) 146
BpmI CTGGAG 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 313, 449
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 218
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 313, 449
BseGI GGATG 2 cut(s) 50, 328
BseLI CCNNNNNNNGG 1 cut(s) 233
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 524
BseXI GCAGC 1 cut(s) 366
BsiHKCI CYCGRG 1 cut(s) 402
BslFI GGGAC 1 cut(s) 421
BslI CCNNNNNNNGG 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 421
BsoBI CYCGRG 1 cut(s) 402
Bsp143I GATC 2 cut(s) 115, 370
Bsp19I CCATGG 1 cut(s) 449
BspACI CCGC 1 cut(s) 482
BspHI TCATGA 2 cut(s) 265, 505
BspLI GGNNCC 1 cut(s) 437
BspMAI CTGCAG 1 cut(s) 13
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 313, 449
BssMI GATC 2 cut(s) 115, 370
BssT1I CCWWGG 2 cut(s) 313, 449
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 2 cut(s) 63, 450
BstAPI GCANNNNNTGC 2 cut(s) 479, 575
BstC8I GCNNGC 1 cut(s) 297
BstDSI CCRYGG 1 cut(s) 449
BstEII GGTNACC 1 cut(s) 317
BstENI CCTNNNNNAGG 1 cut(s) 231
BstF5I GGATG 2 cut(s) 50, 328
BstKTI GATC 2 cut(s) 118, 373
BstMBI GATC 2 cut(s) 115, 370
BstMWI GCNNNNNNNGC 2 cut(s) 479, 575
BstNI CCWGG 1 cut(s) 228
BstPI GGTNACC 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 226
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 366
BstV2I GAAGAC 1 cut(s) 146
BsuI GTATCC 1 cut(s) 347
BtgI CCRYGG 1 cut(s) 449
BtsCI GGATG 2 cut(s) 50, 328
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 297
CciI TCATGA 2 cut(s) 265, 505
Cfr13I GGNCC 1 cut(s) 435
CseI GACGC 1 cut(s) 575
CviAII CATG 4 cut(s) 266, 397, 450, 506
CviJI RGCY 6 cut(s) 5, 274, 295, 299, 379, 411
CviKI_1 RGCY 6 cut(s) 5, 274, 295, 299, 379, 411
DpnI GATC 2 cut(s) 117, 372
DpnII GATC 2 cut(s) 115, 370
DraI TTTAAA 1 cut(s) 544
DrdI GACNNNNNNGTC 1 cut(s) 150
DseDI GACNNNNNNGTC 1 cut(s) 150
Eam1104I CTCTTC 2 cut(s) 63, 450
EarI CTCTTC 2 cut(s) 63, 450
Eco130I CCWWGG 2 cut(s) 313, 449
Eco47I GGWCC 1 cut(s) 435
Eco57I CTGAAG 2 cut(s) 260, 321
Eco88I CYCGRG 1 cut(s) 402
Eco91I GGTNACC 1 cut(s) 317
EcoNI CCTNNNNNAGG 1 cut(s) 231
EcoO109I RGGNCCY 1 cut(s) 435
EcoO65I GGTNACC 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 2 cut(s) 313, 449
EcoT22I ATGCAT 1 cut(s) 52
ErhI CCWWGG 2 cut(s) 313, 449
FaeI CATG 4 cut(s) 269, 400, 453, 509
FaiI YATR 7 cut(s) 267, 285, 390, 398, 451, 507, 574
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FaqI GGGAC 1 cut(s) 421
FatI CATG 4 cut(s) 265, 396, 449, 505
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 2 cut(s) 380, 483
FokI GGATG 2 cut(s) 37, 315
Fsp4HI GCNGC 2 cut(s) 380, 483
FspBI CTAG 2 cut(s) 30, 383
GluI GCNGC 2 cut(s) 380, 483
GsuI CTGGAG 1 cut(s) 201
HgaI GACGC 1 cut(s) 575
Hin1II CATG 4 cut(s) 269, 400, 453, 509
HphI GGTGA 2 cut(s) 173, 329
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 3 cut(s) 266, 506, 536
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4V TGCA 4 cut(s) 11, 50, 360, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 479, 575
Hsp92II CATG 4 cut(s) 269, 400, 453, 509
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 2 cut(s) 115, 370
LmnI GCTCC 2 cut(s) 220, 408
LpnPI CCDG 9 cut(s) 159, 213, 219, 231, 240, 263, 281, 452, 537
Lsp1109I GCAGC 1 cut(s) 366
LweI GCATC 1 cut(s) 59
MaeI CTAG 2 cut(s) 30, 383
MaeIII GTNAC 3 cut(s) 32, 317, 536
MalI GATC 2 cut(s) 117, 372
MboI GATC 2 cut(s) 115, 370
MboII GAAGA 6 cut(s) 80, 146, 212, 377, 437, 494
MluCI AATT 6 cut(s) 62, 101, 122, 136, 307, 468
MmeI TCCRAC 1 cut(s) 576
MnlI CCTC 8 cut(s) 64, 398, 411, 426, 453, 502, 505, 559
Mph1103I ATGCAT 1 cut(s) 52
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 7 cut(s) 78, 111, 120, 252, 261, 543, 580
MspR9I CCNGG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 2 cut(s) 479, 575
NcoI CCATGG 1 cut(s) 449
NdeII GATC 2 cut(s) 115, 370
NlaIII CATG 4 cut(s) 269, 400, 453, 509
NlaIV GGNNCC 1 cut(s) 437
NmuCI GTSAC 2 cut(s) 317, 536
NsiI ATGCAT 1 cut(s) 52
PaeR7I CTCGAG 1 cut(s) 402
PagI TCATGA 2 cut(s) 265, 505
PdmI GAANNNNTTC 1 cut(s) 153
PflFI GACNNNGTC 1 cut(s) 323
PkrI GCNGC 2 cut(s) 381, 484
PpuMI RGGWCCY 1 cut(s) 435
Psp5II RGGWCCY 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 226
PspEI GGTNACC 1 cut(s) 317
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 437
PspPI GGNCC 1 cut(s) 435
PspPPI RGGWCCY 1 cut(s) 435
PspXI VCTCGAGB 1 cut(s) 402
PstI CTGCAG 1 cut(s) 13
PsyI GACNNNGTC 1 cut(s) 323
SaqAI TTAA 7 cut(s) 78, 111, 120, 252, 261, 543, 580
SatI GCNGC 2 cut(s) 380, 483
Sau3AI GATC 2 cut(s) 115, 370
Sau96I GGNCC 1 cut(s) 435
ScrFI CCNGG 1 cut(s) 228
SfaNI GCATC 1 cut(s) 59
SfcI CTRYAG 1 cut(s) 9
Sfr274I CTCGAG 1 cut(s) 402
SinI GGWCC 1 cut(s) 435
SlaI CTCGAG 1 cut(s) 402
SmlI CTYRAG 1 cut(s) 402
SmoI CTYRAG 1 cut(s) 402
SpeI ACTAGT 1 cut(s) 29
Sse9I AATT 6 cut(s) 62, 101, 122, 136, 307, 468
SsiI CCGC 1 cut(s) 482
SspMI CTAG 2 cut(s) 30, 383
StyD4I CCNGG 1 cut(s) 226
StyI CCWWGG 2 cut(s) 313, 449
TaaI ACNGT 1 cut(s) 244
TaqI TCGA 1 cut(s) 403
TasI AATT 6 cut(s) 62, 101, 122, 136, 307, 468
TauI GCSGC 1 cut(s) 485
Tru1I TTAA 7 cut(s) 78, 111, 120, 252, 261, 543, 580
Tru9I TTAA 7 cut(s) 78, 111, 120, 252, 261, 543, 580
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 2 cut(s) 317, 536
TseI GCWGC 1 cut(s) 379
Tsp45I GTSAC 2 cut(s) 317, 536
TspDTI ATGAA 3 cut(s) 385, 479, 494
TspRI CASTG 1 cut(s) 18
Tth111I GACNNNGTC 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 435
XagI CCTNNNNNAGG 1 cut(s) 231
XapI RAATTY 4 cut(s) 62, 101, 136, 307
XcmI CCANNNNNNNNNTGG 1 cut(s) 559
XhoI CTCGAG 1 cut(s) 402
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 2 cut(s) 30, 383
Zsp2I ATGCAT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.