Rorug02G0269300

Protein cornichon homolog 4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0020526
Physical Location & Seq
Reverse (-)
28477442 .. 28478750
1309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0269300.1

Sequence Viewer

Length: 714 bp
ATGCCTGCTTCTGCTTCTGCTTCTGCTTCTCACCAACTTCACGATCTTCTTGGGGACTTCTACTCCAGGAGACTACTCCTCCACAACCCACTTTACCCTCCACCCATCTCTCCATCTTCAACCTCGCACGACACATCTTCGTCTTCTCCCGATCAGTACCCCGGAGACAACAGCTTCGATGCTAATGTGGTCATGGTACTCTCTGTCCTCCTCTGCGCCCTAATTTGCTCTTTGGGGCTCAACTCCATCATAAAGTGCGCTCTGAGGTGCTCGAGCTTCGTGTCCTCGGAGTCTTCTTCTTCCTCAAGAGACAACTCGGCGAGGCTGGCCAACACCGGAGTCAAGAAGAAAGCCCTCAAGACTTTTACGACGGTTAATTACTCAGCTGAGCTTAAGCTTCCCGGGTTGGACAGTGAGTGCATAATTTGTTTGTCGGAGTTTACAACCGGCGAGCGCGTGCGGCTACTTCCCAAGTGTAACCATGGATTCCATGTGAGGTGCATCGATAAGTGGCTGAGCTCTCACTCTTCGTGCCCTAAATGCCGGCACAGCTTGATCGAGACGTGTCAGAAGATCGTTGGCTTCAGCCAGGCAGCTAGCTCGTCGGAGACAACTCGTGCTCTTCCTGTGCAGGAAACTACAGTAAGCATTGCAGCACTTGAACCTGAAGGGTTTATTCGTAATTATAGGGGAATTATTAGCCAAGCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cornichon

Protein Analysis

237

Amino Acids

25.59

Weight (kDa)

8.29

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 137 - 182 3.7e-08 RING-H2 zinc finger domain
zf-RING_2 PF13639 139 - 182 2.5e-14 Ring finger domain
zf-RING_11 PF17123 139 - 168 2e-11 RING-like zinc finger
zf-C3HC4_2 PF13923 139 - 181 1.4e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 140 - 181 3.2e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020526)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0490921 RchiOBHm_Chr3g0492201
rosa_rugosa Rorug02G0268200 Rorug02G0268300 Rorug02G0269200 Rorug02G0269300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 456
AciI CCGC 1 cut(s) 460
AcoI YGGCCR 1 cut(s) 327
AcuI CTGAAG 2 cut(s) 568, 687
AfaI GTAC 2 cut(s) 158, 198
AflII CTTAAG 1 cut(s) 392
AflIII ACRYGT 1 cut(s) 563
AgsI TTSAA 2 cut(s) 120, 662
AjiI CACGTC 1 cut(s) 564
AjnI CCWGG 2 cut(s) 65, 588
Alw21I GWGCWC 3 cut(s) 272, 521, 622
Alw26I GTCTC 5 cut(s) 64, 159, 303, 554, 602
Ama87I CYCGRG 2 cut(s) 271, 401
AoxI GGCC 1 cut(s) 327
ApeKI GCWGC 2 cut(s) 593, 653
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AspLEI GCGC 3 cut(s) 218, 260, 456
AsuC2I CCSGG 3 cut(s) 162, 402, 403
AsuHPI GGTGA 1 cut(s) 23
AsuNHI GCTAGC 2 cut(s) 596, 707
AvaI CYCGRG 2 cut(s) 271, 401
BaeGI GKGCMC 1 cut(s) 536
BalI TGGCCA 1 cut(s) 329
BanII GRGCYC 2 cut(s) 240, 521
BauI CACGAG 1 cut(s) 615
BbsI GAAGAC 2 cut(s) 135, 285
Bbv12I GWGCWC 3 cut(s) 272, 521, 622
BbvI GCAGC 2 cut(s) 605, 665
BccI CCATC 3 cut(s) 113, 121, 254
BcgI CGANNNNNNTGC 2 cut(s) 582, 616
BciT130I CCWGG 2 cut(s) 67, 590
BcnI CCSGG 3 cut(s) 162, 402, 403
BcoDI GTCTC 5 cut(s) 64, 159, 303, 554, 602
BfaI CTAG 3 cut(s) 597, 708, 712
BfmI CTRYAG 1 cut(s) 639
BfrI CTTAAG 1 cut(s) 392
BisI GCNGC 3 cut(s) 461, 594, 654
BlpI GCTNAGC 2 cut(s) 387, 515
BlsI GCNGC 3 cut(s) 462, 595, 655
Bme1390I CCNGG 5 cut(s) 67, 162, 402, 403, 590
BmeT110I CYCGRG 2 cut(s) 271, 401
BmgBI CACGTC 1 cut(s) 564
BmrFI CCNGG 5 cut(s) 67, 162, 402, 403, 590
BmsI GCATC 2 cut(s) 169, 510
BmtI GCTAGC 2 cut(s) 600, 711
BpiI GAAGAC 2 cut(s) 135, 285
BpmI CTGGAG 1 cut(s) 49
Bpu1102I GCTNAGC 2 cut(s) 387, 515
BpuEI CTTGAG 2 cut(s) 289, 341
BpuMI CCSGG 3 cut(s) 162, 402, 403
Bsa29I ATCGAT 1 cut(s) 504
BsaJI CCNNGG 4 cut(s) 160, 285, 401, 481
BsaWI WCCGGW 1 cut(s) 335
BsaXI ACNNNNNCTCC 4 cut(s) 47, 63, 77, 93
Bse118I RCCGGY 2 cut(s) 446, 543
Bse3DI GCAATG 1 cut(s) 648
BseBI CCWGG 2 cut(s) 67, 590
BseCI ATCGAT 1 cut(s) 504
BseDI CCNNGG 4 cut(s) 160, 285, 401, 481
BseMI GCAATG 1 cut(s) 648
BseMII CTCAG 4 cut(s) 254, 378, 396, 506
BseRI GAGGAG 2 cut(s) 68, 200
BseSI GKGCMC 1 cut(s) 536
BseXI GCAGC 2 cut(s) 605, 665
BsgI GTGCAG 1 cut(s) 650
Bsh1236I CGCG 1 cut(s) 456
BshFI GGCC 1 cut(s) 329
BshVI ATCGAT 1 cut(s) 504
BsiHKAI GWGCWC 3 cut(s) 272, 521, 622
BsiHKCI CYCGRG 2 cut(s) 271, 401
BsiSI CCGG 5 cut(s) 162, 336, 402, 447, 544
BslFI GGGAC 1 cut(s) 68
BsmAI GTCTC 5 cut(s) 64, 159, 303, 554, 602
BsmBI CGTCTC 1 cut(s) 554
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 1 cut(s) 329
BsoBI CYCGRG 2 cut(s) 271, 401
Bsp1286I GDGCHC 5 cut(s) 240, 272, 521, 536, 622
Bsp143I GATC 4 cut(s) 43, 151, 555, 573
Bsp1720I GCTNAGC 2 cut(s) 387, 515
Bsp19I CCATGG 1 cut(s) 481
BspACI CCGC 1 cut(s) 460
BspANI GGCC 1 cut(s) 329
BspCNI CTCAG 4 cut(s) 255, 379, 395, 507
BspDI ATCGAT 1 cut(s) 504
BspFNI CGCG 1 cut(s) 456
BspOI GCTAGC 2 cut(s) 600, 711
BspQI GCTCTTC 1 cut(s) 627
BspTI CTTAAG 1 cut(s) 392
BsrDI GCAATG 1 cut(s) 648
BsrFI RCCGGY 2 cut(s) 446, 543
BssAI RCCGGY 2 cut(s) 446, 543
BssECI CCNNGG 4 cut(s) 160, 285, 401, 481
BssMI GATC 4 cut(s) 43, 151, 555, 573
BssSI CACGAG 1 cut(s) 615
BssT1I CCWWGG 1 cut(s) 481
Bst2BI CACGAG 1 cut(s) 615
Bst2UI CCWGG 2 cut(s) 67, 590
Bst4CI ACNGT 3 cut(s) 373, 413, 643
Bst6I CTCTTC 2 cut(s) 532, 627
BstAFI CTTAAG 1 cut(s) 392
BstC8I GCNNGC 7 cut(s) 6, 327, 452, 458, 545, 598, 709
BstDEI CTNAG 4 cut(s) 263, 382, 387, 515
BstDSI CCRYGG 1 cut(s) 481
BstFNI CGCG 1 cut(s) 456
BstHHI GCGC 3 cut(s) 218, 260, 456
BstKTI GATC 4 cut(s) 46, 154, 558, 576
BstMAI GTCTC 5 cut(s) 64, 159, 303, 554, 602
BstMBI GATC 4 cut(s) 43, 151, 555, 573
BstMWI GCNNNNNNNGC 5 cut(s) 326, 460, 540, 549, 708
BstNI CCWGG 2 cut(s) 67, 590
BstSCI CCNGG 5 cut(s) 65, 160, 400, 401, 588
BstSFI CTRYAG 1 cut(s) 639
BstSLI GKGCMC 1 cut(s) 536
BstUI CGCG 1 cut(s) 456
BstV1I GCAGC 2 cut(s) 605, 665
BstV2I GAAGAC 2 cut(s) 135, 285
Bsu15I ATCGAT 1 cut(s) 504
BsuRI GGCC 1 cut(s) 329
BsuTUI ATCGAT 1 cut(s) 504
BtgI CCRYGG 1 cut(s) 481
BtrI CACGTC 1 cut(s) 564
BtsIMutI CAGTG 1 cut(s) 418
Cac8I GCNNGC 7 cut(s) 6, 327, 452, 458, 545, 598, 709
CfoI GCGC 3 cut(s) 218, 260, 456
Cfr10I RCCGGY 2 cut(s) 446, 543
Cfr9I CCCGGG 1 cut(s) 401
ClaI ATCGAT 1 cut(s) 504
Csp6I GTAC 2 cut(s) 157, 197
CviAII CATG 3 cut(s) 193, 482, 491
CviQI GTAC 2 cut(s) 157, 197
DdeI CTNAG 4 cut(s) 263, 382, 387, 515
DpnI GATC 4 cut(s) 45, 153, 557, 575
DpnII GATC 4 cut(s) 43, 151, 555, 573
EaeI YGGCCR 1 cut(s) 327
Eam1104I CTCTTC 2 cut(s) 532, 627
EarI CTCTTC 2 cut(s) 532, 627
Ecl136II GAGCTC 1 cut(s) 519
Eco130I CCWWGG 1 cut(s) 481
Eco24I GRGCYC 2 cut(s) 240, 521
Eco53kI GAGCTC 1 cut(s) 519
Eco57I CTGAAG 2 cut(s) 568, 687
Eco88I CYCGRG 2 cut(s) 271, 401
EcoICRI GAGCTC 1 cut(s) 519
EcoRII CCWGG 2 cut(s) 65, 588
EcoT14I CCWWGG 1 cut(s) 481
EcoT38I GRGCYC 2 cut(s) 240, 521
ErhI CCWWGG 1 cut(s) 481
Esp3I CGTCTC 1 cut(s) 554
FaeI CATG 3 cut(s) 196, 485, 494
FaiI YATR 6 cut(s) 194, 251, 422, 483, 492, 687
FaqI GGGAC 1 cut(s) 68
FatI CATG 3 cut(s) 192, 481, 490
Fnu4HI GCNGC 3 cut(s) 461, 594, 654
FriOI GRGCYC 2 cut(s) 240, 521
Fsp4HI GCNGC 3 cut(s) 461, 594, 654
FspBI CTAG 3 cut(s) 597, 708, 712
GlaI GCGC 3 cut(s) 217, 259, 455
GluI GCNGC 3 cut(s) 461, 594, 654
GsuI CTGGAG 1 cut(s) 49
HaeIII GGCC 1 cut(s) 329
HapII CCGG 5 cut(s) 162, 336, 402, 447, 544
HhaI GCGC 3 cut(s) 218, 260, 456
Hin1II CATG 3 cut(s) 196, 485, 494
Hin6I GCGC 3 cut(s) 216, 258, 454
HinP1I GCGC 3 cut(s) 216, 258, 454
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 3 cut(s) 290, 339, 486
HpaII CCGG 5 cut(s) 162, 336, 402, 447, 544
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 441
Hpy188I TCNGA 5 cut(s) 264, 289, 436, 570, 607
Hpy188III TCNNGA 6 cut(s) 41, 149, 306, 343, 358, 559
Hpy8I GTNNAC 1 cut(s) 441
Hpy99I CGWCG 2 cut(s) 373, 607
HpyAV CCTTC 1 cut(s) 662
HpyCH4III ACNGT 3 cut(s) 373, 413, 643
HpyCH4IV ACGT 1 cut(s) 563
HpyCH4V TGCA 4 cut(s) 420, 501, 631, 653
HpyF10VI GCNNNNNNNGC 5 cut(s) 326, 460, 540, 549, 708
HpyF3I CTNAG 4 cut(s) 263, 382, 387, 515
HpySE526I ACGT 1 cut(s) 563
Hsp92II CATG 3 cut(s) 196, 485, 494
HspAI GCGC 3 cut(s) 216, 258, 454
KroI GCCGGC 1 cut(s) 543
KroNI GCCGGC 1 cut(s) 545
Kzo9I GATC 4 cut(s) 43, 151, 555, 573
LguI GCTCTTC 1 cut(s) 627
Lsp1109I GCAGC 2 cut(s) 605, 665
LweI GCATC 2 cut(s) 169, 510
MaeI CTAG 3 cut(s) 597, 708, 712
MaeII ACGT 1 cut(s) 563
MaeIII GTNAC 1 cut(s) 476
MalI GATC 4 cut(s) 45, 153, 557, 575
MboI GATC 4 cut(s) 43, 151, 555, 573
MhlI GDGCHC 5 cut(s) 240, 272, 521, 536, 622
MlsI TGGCCA 1 cut(s) 329
MluCI AATT 5 cut(s) 222, 376, 423, 682, 693
MluNI TGGCCA 1 cut(s) 329
MlyI GAGTC 2 cut(s) 299, 348
MmeI TCCRAC 3 cut(s) 387, 414, 585
Mox20I TGGCCA 1 cut(s) 329
MroNI GCCGGC 1 cut(s) 543
MscI TGGCCA 1 cut(s) 329
MseI TTAA 2 cut(s) 375, 393
Msp20I TGGCCA 1 cut(s) 329
MspA1I CMGCKG 1 cut(s) 386
MspCI CTTAAG 1 cut(s) 392
MspI CCGG 5 cut(s) 162, 336, 402, 447, 544
MspR9I CCNGG 5 cut(s) 67, 162, 402, 403, 590
MvaI CCWGG 2 cut(s) 67, 590
MvnI CGCG 1 cut(s) 456
MwoI GCNNNNNNNGC 5 cut(s) 326, 460, 540, 549, 708
NaeI GCCGGC 1 cut(s) 545
NciI CCSGG 3 cut(s) 162, 402, 403
NcoI CCATGG 1 cut(s) 481
NdeII GATC 4 cut(s) 43, 151, 555, 573
NgoMIV GCCGGC 1 cut(s) 543
NheI GCTAGC 2 cut(s) 596, 707
NlaIII CATG 3 cut(s) 196, 485, 494
NmeAIII GCCGAG 1 cut(s) 296
PaeR7I CTCGAG 1 cut(s) 271
PciSI GCTCTTC 1 cut(s) 627
PdiI GCCGGC 1 cut(s) 545
PfeI GAWTC 1 cut(s) 486
PfoI TCCNGGA 1 cut(s) 65
PkrI GCNGC 3 cut(s) 462, 595, 655
PleI GAGTC 2 cut(s) 298, 347
PpsI GAGTC 2 cut(s) 298, 347
Psp124BI GAGCTC 1 cut(s) 521
Psp6I CCWGG 2 cut(s) 65, 588
PspGI CCWGG 2 cut(s) 65, 588
PspXI VCTCGAGB 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 2 cut(s) 158, 198
RsaNI GTAC 2 cut(s) 157, 197
SacI GAGCTC 1 cut(s) 521
SapI GCTCTTC 1 cut(s) 627
SaqAI TTAA 2 cut(s) 375, 393
SatI GCNGC 3 cut(s) 461, 594, 654
Sau3AI GATC 4 cut(s) 43, 151, 555, 573
SchI GAGTC 2 cut(s) 299, 348
ScrFI CCNGG 5 cut(s) 67, 162, 402, 403, 590
SduI GDGCHC 5 cut(s) 240, 272, 521, 536, 622
SfaNI GCATC 2 cut(s) 169, 510
SfcI CTRYAG 1 cut(s) 639
Sfr274I CTCGAG 1 cut(s) 271
SlaI CTCGAG 1 cut(s) 271
SmaI CCCGGG 1 cut(s) 403
SmlI CTYRAG 4 cut(s) 271, 304, 356, 392
SmoI CTYRAG 4 cut(s) 271, 304, 356, 392
Sse9I AATT 5 cut(s) 222, 376, 423, 682, 693
SsiI CCGC 1 cut(s) 460
SspMI CTAG 3 cut(s) 597, 708, 712
SstI GAGCTC 1 cut(s) 521
StyD4I CCNGG 5 cut(s) 65, 160, 400, 401, 588
StyI CCWWGG 1 cut(s) 481
TaaI ACNGT 3 cut(s) 373, 413, 643
TaiI ACGT 1 cut(s) 566
TaqI TCGA 4 cut(s) 177, 272, 504, 558
TasI AATT 5 cut(s) 222, 376, 423, 682, 693
TauI GCSGC 1 cut(s) 463
TfiI GAWTC 1 cut(s) 486
Tru1I TTAA 2 cut(s) 375, 393
Tru9I TTAA 2 cut(s) 375, 393
TscAI CASTG 1 cut(s) 418
TseI GCWGC 2 cut(s) 593, 653
TspMI CCCGGG 1 cut(s) 401
TspRI CASTG 1 cut(s) 418
Vha464I CTTAAG 1 cut(s) 392
XhoI CTCGAG 1 cut(s) 271
XmaI CCCGGG 1 cut(s) 401
XspI CTAG 3 cut(s) 597, 708, 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.