Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010865

Physical Location & Seq

Genomic Coordinates Reverse (-)

41922877 .. 41924006

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0337400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGAGTTCACCAACCAGATGTGCAACCGTATCTGTTTGGCCTTGATCCTCGTGCTGGGGGTTTGGTCTTCTGAGGCCACTTCTCGCAATCTCCAAGATGCATCAATGTATGGGAGGTACGAGCAATGGATGGCTCGTTACGGACGTGTCTACAATGACATGAACGAAAAGGAGGAACGCTTCAATATATTCAAGGACAATGTGGCATTTATAGAATCTTCCAATAATGCAGGAAACAAACTTTACAAATTGAGTGTGAATCAATTTGCAGACCTTACGAATGAAGAATTCACTACCGCAAGAAATCGGTTCAAGGGGCATGAGTGTTCCACAAAGATCACTACTTTCAAGTATGAAAATGCTAGCGTGCCAGCTACAATGGACTGGAGGCAGAAAGGAGCTGTAACTCCCATCAAGGACCAAGGCCAATGTGGATGTTGTTGGGCGTTCTCAGCCGTGGCAGCCATGGAAGGAATTACTCAACTTACAACTGGTAAATTGATTTCTTTGTCTGAGCAAGAGCTAGTTGACTGTGATGTCAATGGTGAAGATCAAGGCTGTGAGGGTGGCTTGATGGACGATGCCTTTCAGTTCATCAATCAAAATCATGGACTCAGTACCGAAGCTAATTATCCATACACTGGTGTTGATGGTACATGCAGTGCCAAGAAGGAAGCAGACCATGCAGCCTCAATCACAGGCCACGAAGATGTGCCTGCAAATAGTGAAAGTGCACTCCTTAAGGCCGTCGCTAATCAACCTATTTCTGTTGCCATTGATGCTAGTGGATCCGATTTCCAGTTCTACTCAAGTGGTATTTTCACAGGATCCTGTGGAACTAGCCTAGACCATGGTGTTACCGCTGTTGGTTATGGTGCTAGCAATGATGGGACTAAGTACTGGCTGGTGAAGAACTCATGGGGTGAACAATGGGGTGAAGAAGGTTACATAAGGATGCAAAGAGATGTTTCTGCACCAGAAGGTCTCTGTGGCATTGCCATGGAAGCTTCGTATCCCACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006855 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0022804 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLC

Protein Analysis

341

Amino Acids

37.34

Weight (kDa)

4.67

Isoelectric Point (pI)

23.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	40 - 97	3.1e-19	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	123 - 340	5.4e-85	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15500 AT1G80300
fragaria_vesca	FvH4_6g30640 FvH4_6g30640
malus_domestica	MD09G1218300.v1.1 MD17G1201800.v1.1
prunus_persica	Prupe.3G077600_v2.0.a1 Prupe.3G077600_v2.0.a1
pyrus_communis	pycom09g13660 pycom17g20570
rosa_chinensis	RchiOBHm_Chr2g0137041
rosa_laevigata	RLG00000019601
rosa_multiflora	Rmu_sc0001374.1_g000036
rosa_roxburghii	Rroxscaffold_2G00107750
rosa_rugosa	Rorug02G0337400
rosa_samantha	Rh2AG386400 Rh2BG393300 Rh2CG373700 Rh2DG409400
rosa_wichuraiana	Rw2G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	536
AccB7I	CCANNNNNTGG	1 cut(s)	641
AccI	GTMKAC	1 cut(s)	150
AciI	CCGC	2 cut(s)	297, 861
AclWI	GGATC	5 cut(s)	40, 783, 796, 822, 835
AcsI	RAATTY	1 cut(s)	287
AfaI	GTAC	4 cut(s)	119, 619, 655, 899
AfiI	CCNNNNNNNGG	2 cut(s)	55, 641
AflII	CTTAAG	1 cut(s)	740
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	4 cut(s)	184, 193, 313, 349
AjiI	CACGTC	1 cut(s)	146
AluBI	AGCT	5 cut(s)	374, 401, 523, 626, 1007
AluI	AGCT	5 cut(s)	374, 401, 523, 626, 1007
Alw21I	GWGCWC	1 cut(s)	736
Alw26I	GTCTC	1 cut(s)	989
Alw44I	GTGCAC	1 cut(s)	732
AlwI	GGATC	5 cut(s)	40, 783, 796, 822, 835
AoxI	GGCC	5 cut(s)	39, 75, 424, 700, 744
ApaLI	GTGCAC	1 cut(s)	732
ApeKI	GCWGC	2 cut(s)	461, 686
ApoI	RAATTY	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	418
AsuHPI	GGTGA	4 cut(s)	557, 919, 935, 947
AsuNHI	GCTAGC	2 cut(s)	362, 878
AvaII	GGWCC	1 cut(s)	418
BaeGI	GKGCMC	1 cut(s)	736
BamHI	GGATCC	2 cut(s)	788, 827
BauI	CACGAG	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	736
BbvI	GCAGC	2 cut(s)	473, 698
BccI	CCATC	5 cut(s)	124, 419, 568, 644, 881
BceAI	ACGGC	2 cut(s)	440, 731
BciVI	GTATCC	1 cut(s)	1023
BcoDI	GTCTC	1 cut(s)	989
BfaI	CTAG	6 cut(s)	363, 524, 783, 840, 845, 879
BfrI	CTTAAG	1 cut(s)	740
BfuI	GTATCC	1 cut(s)	1023
BisI	GCNGC	2 cut(s)	462, 687
BlsI	GCNGC	2 cut(s)	463, 688
BmcAI	AGTACT	1 cut(s)	899
Bme18I	GGWCC	1 cut(s)	418
BmgBI	CACGTC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	2 cut(s)	790, 829
BmsI	GCATC	5 cut(s)	88, 110, 571, 769, 945
BmtI	GCTAGC	2 cut(s)	366, 882
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	406
BpuEI	CTTGAG	1 cut(s)	793
BsaI	GGTCTC	1 cut(s)	989
BsaJI	CCNNGG	5 cut(s)	421, 456, 465, 850, 999
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 641
Bse1I	ACTGG	5 cut(s)	389, 496, 646, 799, 905
Bse3DI	GCAATG	3 cut(s)	131, 889, 993
BseDI	CCNNGG	5 cut(s)	421, 456, 465, 850, 999
BseGI	GGATG	3 cut(s)	135, 440, 960
BseLI	CCNNNNNNNGG	2 cut(s)	55, 641
BseMI	GCAATG	3 cut(s)	131, 889, 993
BseMII	CTCAG	4 cut(s)	63, 465, 504, 628
BseNI	ACTGG	5 cut(s)	389, 496, 646, 799, 905
BseSI	GKGCMC	1 cut(s)	736
BseXI	GCAGC	2 cut(s)	473, 698
BseYI	CCCAGC	1 cut(s)	55
BsgI	GTGCAG	1 cut(s)	957
BshFI	GGCC	5 cut(s)	41, 77, 426, 702, 746
BsiHKAI	GWGCWC	1 cut(s)	736
BslFI	GGGAC	1 cut(s)	904
BslI	CCNNNNNNNGG	2 cut(s)	55, 641
BsmAI	GTCTC	1 cut(s)	989
BsmFI	GGGAC	1 cut(s)	904
BsnI	GGCC	5 cut(s)	41, 77, 426, 702, 746
Bso31I	GGTCTC	1 cut(s)	989
Bsp1286I	GDGCHC	1 cut(s)	736
Bsp143I	GATC	5 cut(s)	45, 336, 550, 788, 827
Bsp19I	CCATGG	3 cut(s)	465, 850, 999
BspACI	CCGC	2 cut(s)	297, 861
BspANI	GGCC	5 cut(s)	41, 77, 426, 702, 746
BspCNI	CTCAG	4 cut(s)	64, 464, 505, 627
BspLI	GGNNCC	2 cut(s)	790, 829
BspOI	GCTAGC	2 cut(s)	366, 882
BspPI	GGATC	5 cut(s)	40, 783, 796, 822, 835
BspTI	CTTAAG	1 cut(s)	740
BspTNI	GGTCTC	1 cut(s)	989
BsrDI	GCAATG	3 cut(s)	131, 889, 993
BsrI	ACTGG	5 cut(s)	389, 496, 646, 799, 905
BssECI	CCNNGG	5 cut(s)	421, 456, 465, 850, 999
BssMI	GATC	5 cut(s)	45, 336, 550, 788, 827
BssSI	CACGAG	1 cut(s)	50
BssT1I	CCWWGG	4 cut(s)	421, 465, 850, 999
Bst2BI	CACGAG	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	29, 533
BstAFI	CTTAAG	1 cut(s)	740
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstC8I	GCNNGC	5 cut(s)	364, 368, 372, 717, 880
BstDEI	CTNAG	5 cut(s)	72, 451, 513, 614, 894
BstDSI	CCRYGG	4 cut(s)	456, 465, 850, 999
BstF5I	GGATG	3 cut(s)	135, 440, 960
BstKTI	GATC	5 cut(s)	48, 339, 553, 791, 830
BstMAI	GTCTC	1 cut(s)	989
BstMBI	GATC	5 cut(s)	45, 336, 550, 788, 827
BstMWI	GCNNNNNNNGC	5 cut(s)	452, 461, 683, 779, 1004
BstNSI	RCATGY	1 cut(s)	660
BstSLI	GKGCMC	1 cut(s)	736
BstV1I	GCAGC	2 cut(s)	473, 698
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	2 cut(s)	788, 827
BstYI	RGATCY	2 cut(s)	788, 827
BsuI	GTATCC	1 cut(s)	1023
BsuRI	GGCC	5 cut(s)	41, 77, 426, 702, 746
BtgI	CCRYGG	4 cut(s)	456, 465, 850, 999
BtrI	CACGTC	1 cut(s)	146
BtsCI	GGATG	3 cut(s)	135, 440, 960
BtsI	GCAGTG	2 cut(s)	667, 1017
BtsIMutI	CAGTG	3 cut(s)	639, 667, 1017
Cac8I	GCNNGC	5 cut(s)	364, 368, 372, 717, 880
Cfr13I	GGNCC	1 cut(s)	418
Csp6I	GTAC	4 cut(s)	118, 618, 654, 898
CviAII	CATG	9 cut(s)	160, 320, 466, 608, 657, 683, 851, 918, 1000
CviQI	GTAC	4 cut(s)	118, 618, 654, 898
DdeI	CTNAG	5 cut(s)	72, 451, 513, 614, 894
DpnI	GATC	5 cut(s)	47, 338, 552, 790, 829
DpnII	GATC	5 cut(s)	45, 336, 550, 788, 827
DrdI	GACNNNNNNGTC	1 cut(s)	536
DseDI	GACNNNNNNGTC	1 cut(s)	536
Eco130I	CCWWGG	4 cut(s)	421, 465, 850, 999
Eco31I	GGTCTC	1 cut(s)	989
Eco47I	GGWCC	1 cut(s)	418
EcoRI	GAATTC	1 cut(s)	287
EcoT14I	CCWWGG	4 cut(s)	421, 465, 850, 999
EcoT22I	ATGCAT	1 cut(s)	103
ErhI	CCWWGG	4 cut(s)	421, 465, 850, 999
FaeI	CATG	9 cut(s)	163, 323, 469, 611, 660, 686, 854, 921, 1003
FaqI	GGGAC	1 cut(s)	904
FatI	CATG	9 cut(s)	159, 319, 465, 607, 656, 682, 850, 917, 999
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	2 cut(s)	462, 687
FokI	GGATG	3 cut(s)	142, 447, 967
Fsp4HI	GCNGC	2 cut(s)	462, 687
FspBI	CTAG	6 cut(s)	363, 524, 783, 840, 845, 879
GluI	GCNGC	2 cut(s)	462, 687
GsaI	CCCAGC	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	406
HaeIII	GGCC	5 cut(s)	41, 77, 426, 702, 746
Hin1II	CATG	9 cut(s)	163, 323, 469, 611, 660, 686, 854, 921, 1003
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HindIII	AAGCTT	1 cut(s)	1005
HinfI	GANTC	3 cut(s)	215, 259, 612
HphI	GGTGA	4 cut(s)	557, 919, 935, 947
Hpy166II	GTNNAC	5 cut(s)	9, 151, 529, 734, 926
Hpy188I	TCNGA	3 cut(s)	73, 514, 793
Hpy8I	GTNNAC	5 cut(s)	9, 151, 529, 734, 926
Hpy99I	CGWCG	1 cut(s)	752
HpyAV	CCTTC	4 cut(s)	464, 664, 935, 974
HpyCH4III	ACNGT	2 cut(s)	29, 533
HpyCH4IV	ACGT	1 cut(s)	145
HpyF10VI	GCNNNNNNNGC	5 cut(s)	452, 461, 683, 779, 1004
HpyF3I	CTNAG	5 cut(s)	72, 451, 513, 614, 894
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	9 cut(s)	163, 323, 469, 611, 660, 686, 854, 921, 1003
Kzo9I	GATC	5 cut(s)	45, 336, 550, 788, 827
LmnI	GCTCC	1 cut(s)	398
Lsp1109I	GCAGC	2 cut(s)	473, 698
LweI	GCATC	5 cut(s)	88, 110, 571, 769, 945
MaeI	CTAG	6 cut(s)	363, 524, 783, 840, 845, 879
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	4 cut(s)	137, 403, 856, 944
MalI	GATC	5 cut(s)	47, 338, 552, 790, 829
MboI	GATC	5 cut(s)	45, 336, 550, 788, 827
MboII	GAAGA	7 cut(s)	60, 210, 296, 560, 719, 922, 950
MflI	RGATCY	2 cut(s)	788, 827
MhlI	GDGCHC	1 cut(s)	736
MluCI	AATT	6 cut(s)	248, 263, 287, 474, 497, 628
MlyI	GAGTC	1 cut(s)	606
MnlI	CCTC	7 cut(s)	59, 67, 108, 166, 381, 556, 700
Mph1103I	ATGCAT	1 cut(s)	103
MseI	TTAA	1 cut(s)	741
MslI	CAYNNNNRTG	3 cut(s)	708, 953, 998
MspA1I	CMGCKG	1 cut(s)	863
MspCI	CTTAAG	1 cut(s)	740
MwoI	GCNNNNNNNGC	5 cut(s)	452, 461, 683, 779, 1004
NcoI	CCATGG	3 cut(s)	465, 850, 999
NdeII	GATC	5 cut(s)	45, 336, 550, 788, 827
NheI	GCTAGC	2 cut(s)	362, 878
NlaIII	CATG	9 cut(s)	163, 323, 469, 611, 660, 686, 854, 921, 1003
NlaIV	GGNNCC	2 cut(s)	790, 829
NsiI	ATGCAT	1 cut(s)	103
NspI	RCATGY	1 cut(s)	660
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PfeI	GAWTC	2 cut(s)	215, 259
PflMI	CCANNNNNTGG	1 cut(s)	641
PkrI	GCNGC	2 cut(s)	463, 688
PleI	GAGTC	1 cut(s)	606
PpsI	GAGTC	1 cut(s)	606
PspFI	CCCAGC	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	790, 829
PspPI	GGNCC	1 cut(s)	418
PsuI	RGATCY	2 cut(s)	788, 827
RsaI	GTAC	4 cut(s)	119, 619, 655, 899
RsaNI	GTAC	4 cut(s)	118, 618, 654, 898
RseI	CAYNNNNRTG	3 cut(s)	708, 953, 998
SaqAI	TTAA	1 cut(s)	741
SatI	GCNGC	2 cut(s)	462, 687
Sau3AI	GATC	5 cut(s)	45, 336, 550, 788, 827
Sau96I	GGNCC	1 cut(s)	418
ScaI	AGTACT	1 cut(s)	899
SchI	GAGTC	1 cut(s)	606
SduI	GDGCHC	1 cut(s)	736
SfaNI	GCATC	5 cut(s)	88, 110, 571, 769, 945
SinI	GGWCC	1 cut(s)	418
SmiMI	CAYNNNNRTG	3 cut(s)	708, 953, 998
SmlI	CTYRAG	2 cut(s)	740, 808
SmoI	CTYRAG	2 cut(s)	740, 808
Sse9I	AATT	6 cut(s)	248, 263, 287, 474, 497, 628
SsiI	CCGC	2 cut(s)	297, 861
SspMI	CTAG	6 cut(s)	363, 524, 783, 840, 845, 879
StyI	CCWWGG	4 cut(s)	421, 465, 850, 999
TaaI	ACNGT	2 cut(s)	29, 533
TaiI	ACGT	1 cut(s)	148
TasI	AATT	6 cut(s)	248, 263, 287, 474, 497, 628
TatI	WGTACW	1 cut(s)	897
TfiI	GAWTC	2 cut(s)	215, 259
Tru1I	TTAA	1 cut(s)	741
Tru9I	TTAA	1 cut(s)	741
TscAI	CASTG	3 cut(s)	646, 667, 1024
TseI	GCWGC	2 cut(s)	461, 686
TspDTI	ATGAA	4 cut(s)	176, 297, 369, 583
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	3 cut(s)	646, 667, 1024
Van91I	CCANNNNNTGG	1 cut(s)	641
Vha464I	CTTAAG	1 cut(s)	740
VneI	GTGCAC	1 cut(s)	732
VpaK11BI	GGWCC	1 cut(s)	418
XapI	RAATTY	1 cut(s)	287
XceI	RCATGY	1 cut(s)	660
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	6 cut(s)	363, 524, 783, 840, 845, 879
ZrmI	AGTACT	1 cut(s)	899
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.