Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0010865

Physical Location & Seq

Genomic Coordinates Forward (+)

51849422 .. 51853722

Gene Structure 4301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G031620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGAGGCTGTTCTACAAACCAGAGGGCTCCTCTCTCTGCCCCCAAATCCCAAGGCCAGGTATTCCCAGCCTTCTCTGGGCTTAAAGCAACGAGCTTTCTCCACAAAACCCAAAACCTTAGCTGGGTTATCTCTTTCCTCCTCAAATGGGTTCCAGAAATTTCAAACCTTTGCCCCCAAAACTCATGGCTTTGGCGCAAAAGAGAAGAACTTGTTCGTCTGCAGAGCTGAGGCTGCTGCTGCTGCGGCTGATGGGTTTGGTGAAATTGAGGAGCGCAAGTTCTTTGGGATTGGGACTTCAACCCTCAAGAAGATTGTACCACTTGGGTTGATGTTCTTTTGTATTCTTTTCAATTACACAATCCTGAGAGATACAAAAGATGTGTTGGTTGTAACAGCTAAAGGGAGTAGTGCAGAGATTATACCATTCTTAAAGACTTGGGTGAATTTGCCCATGGCTGTTGGCTTCATGCTCTTGTACACGAAGTTGTCTAATGTTTTGTCAAAGAAGGCTCTCTTCTACACTGTTATTCTTCCATTCATCGCCTTTTTCGGGGCTTTCGGGTTCATCTTGTATCCCATGAGCAGCTACATCCACCCTGAAGCGCTTGCTGATAGTCTTCTCAACACTCTTGGCCCTAGATTCCTTGGTCCACTTGCAATCCTGAGGATTTGGAGCTTTTGTTTGTTCTATGTCATGGCTGAATTGTGGGGGAGTGTGGTCGTTTCTGTGCTTTTCTGGGGGTTTGCCAATCAGATAACTACCGTTGACGAAGCAAAAAGGTTTTACCCTCTTTTTGGACTTGGGGCCAATATTGCCCTCATTTTCTCAGGCAGAACCGTAAAGTATTTCTCTAATTTGAGGAAAAATTTGGGTCCTGGAGTTGATGGTTGGGCCCTTTCCTTAAAGGGGATGATGAGCATTGTGGTGATGATGGGCTTAGCAATCTGTGGTCTGTACTGGTGGACAAATGCTTATGCTCCTCTTCCCACCCGCAGCAAGAAGAAGAAGGAAAAGCCGAAAATGGGGACAATGGAGAGTTTGAAGTTTTTGGTGTCTTCACCATACATCAGAGATCTTGCCACTTTGGTGGTTGCATATGGTATTAGTATCAACCTTGTTGAGGTTACATGGAAGTCCAAGCTCAAAGCTCAGTTTCCAAGCCCGAATGAGTACTCTTCTTTTATGGGTGACTTCTCAACTGCCACCGGAATAGCGACTTTCACAATGATGTTGCTCAGCCAATTTATATTCGAAAAATATGGATGGGGAGTTGCTGCGAAGATCACACCACTGTACTACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006855 GO:0006862 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0022804 GO:0022857 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLC

Protein Analysis

435

Amino Acids

48.28

Weight (kDa)

9.77

Isoelectric Point (pI)

28.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TLC	PF03219	92 - 432	9.3e-141	TLC ATP/ADP transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15500 AT1G80300
fragaria_vesca	FvH4_6g30640 FvH4_6g30640
malus_domestica	MD09G1218300.v1.1 MD17G1201800.v1.1
prunus_persica	Prupe.3G077600_v2.0.a1 Prupe.3G077600_v2.0.a1
pyrus_communis	pycom09g13660 pycom17g20570
rosa_chinensis	RchiOBHm_Chr2g0137041
rosa_laevigata	RLG00000019601
rosa_multiflora	Rmu_sc0001374.1_g000036
rosa_roxburghii	Rroxscaffold_2G00107750
rosa_rugosa	Rorug02G0337400
rosa_samantha	Rh2AG386400 Rh2BG393300 Rh2CG373700 Rh2DG409400
rosa_wichuraiana	Rw2G031620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	245, 994
AcsI	RAATTY	3 cut(s)	158, 445, 868
AcuI	CTGAAG	1 cut(s)	621
AfaI	GTAC	5 cut(s)	318, 479, 959, 1175, 1298
AfeI	AGCGCT	1 cut(s)	606
AfiI	CCNNNNNNNGG	9 cut(s)	57, 77, 123, 147, 552, 797, 909, 1025, 1123
AgsI	TTSAA	4 cut(s)	164, 300, 352, 1045
AjnI	CCWGG	2 cut(s)	56, 877
AleI	CACNNNNGTG	1 cut(s)	1088
AloI	GAACNNNNNNTCC	2 cut(s)	263, 295
AluBI	AGCT	8 cut(s)	95, 122, 227, 398, 588, 678, 1144, 1151
AluI	AGCT	8 cut(s)	95, 122, 227, 398, 588, 678, 1144, 1151
Aor51HI	AGCGCT	1 cut(s)	606
AoxI	GGCC	4 cut(s)	54, 634, 807, 894
ApaI	GGGCCC	1 cut(s)	898
ApeKI	GCWGC	7 cut(s)	233, 236, 239, 242, 585, 996, 1277
ApoI	RAATTY	3 cut(s)	158, 445, 868
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	3 cut(s)	197, 276, 607
AspS9I	GGNCC	6 cut(s)	635, 650, 807, 875, 894, 895
AsuHPI	GGTGA	5 cut(s)	272, 454, 940, 1053, 1202
AsuII	TTCGAA	1 cut(s)	1254
AvaII	GGWCC	2 cut(s)	650, 875
AxyI	CCTNAGG	1 cut(s)	665
BaeGI	GKGCMC	1 cut(s)	898
BanII	GRGCYC	2 cut(s)	30, 898
BbsI	GAAGAC	2 cut(s)	611, 1050
BbvCI	CCTCAGC	1 cut(s)	228
BbvI	GCAGC	7 cut(s)	220, 223, 226, 229, 597, 1008, 1264
BccI	CCATC	4 cut(s)	245, 881, 928, 1260
BciT130I	CCWGG	2 cut(s)	58, 879
BciVI	GTATCC	1 cut(s)	585
BfaI	CTAG	1 cut(s)	639
BfmI	CTRYAG	1 cut(s)	220
BfoI	RGCGCY	1 cut(s)	608
BfuI	GTATCC	1 cut(s)	585
BglII	AGATCT	1 cut(s)	1075
BisI	GCNGC	8 cut(s)	234, 237, 240, 243, 246, 586, 997, 1278
BlpI	GCTNAGC	2 cut(s)	940, 1238
BlsI	GCNGC	8 cut(s)	235, 238, 241, 244, 247, 587, 998, 1279
BmcAI	AGTACT	1 cut(s)	1175
Bme1390I	CCNGG	2 cut(s)	58, 879
Bme18I	GGWCC	2 cut(s)	650, 875
BmgT120I	GGNCC	6 cut(s)	635, 650, 807, 875, 894, 895
BmiI	GGNNCC	5 cut(s)	29, 152, 808, 876, 896
BmrFI	CCNGG	2 cut(s)	58, 879
BpiI	GAAGAC	2 cut(s)	611, 1050
BplI	GAGNNNNNCTC	2 cut(s)	15, 47
BpmI	CTGGAG	1 cut(s)	900
Bpu10I	CCTNAGC	2 cut(s)	118, 228
Bpu1102I	GCTNAGC	2 cut(s)	940, 1238
Bpu14I	TTCGAA	1 cut(s)	1254
BpuEI	CTTGAG	1 cut(s)	290
BsaJI	CCNNGG	3 cut(s)	51, 453, 646
BsaWI	WCCGGW	1 cut(s)	1208
BsaXI	ACNNNNNCTCC	4 cut(s)	263, 293, 667, 697
Bsc4I	CCNNNNNNNGG	9 cut(s)	57, 77, 123, 147, 552, 797, 909, 1025, 1123
Bse1I	ACTGG	1 cut(s)	965
Bse21I	CCTNAGG	1 cut(s)	665
BseBI	CCWGG	2 cut(s)	58, 879
BseDI	CCNNGG	3 cut(s)	51, 453, 646
BseGI	GGATG	3 cut(s)	591, 918, 1271
BseLI	CCNNNNNNNGG	9 cut(s)	57, 77, 123, 147, 552, 797, 909, 1025, 1123
BseMII	CTCAG	6 cut(s)	219, 356, 656, 843, 1166, 1252
BseNI	ACTGG	1 cut(s)	965
BseRI	GAGGAG	4 cut(s)	20, 130, 284, 972
BseSI	GKGCMC	1 cut(s)	898
BseXI	GCAGC	7 cut(s)	220, 223, 226, 229, 597, 1008, 1264
BseYI	CCCAGC	2 cut(s)	66, 122
BsgI	GTGCAG	1 cut(s)	432
BshFI	GGCC	4 cut(s)	56, 636, 809, 896
BsiSI	CCGG	1 cut(s)	1209
BslFI	GGGAC	2 cut(s)	307, 1042
BslI	CCNNNNNNNGG	9 cut(s)	57, 77, 123, 147, 552, 797, 909, 1025, 1123
BsmFI	GGGAC	2 cut(s)	307, 1042
BsnI	GGCC	4 cut(s)	56, 636, 809, 896
Bsp119I	TTCGAA	1 cut(s)	1254
Bsp120I	GGGCCC	1 cut(s)	894
Bsp1286I	GDGCHC	2 cut(s)	30, 898
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	2 cut(s)	1075, 1284
Bsp1720I	GCTNAGC	2 cut(s)	940, 1238
Bsp19I	CCATGG	1 cut(s)	453
BspACI	CCGC	2 cut(s)	245, 994
BspANI	GGCC	4 cut(s)	56, 636, 809, 896
BspCNI	CTCAG	6 cut(s)	220, 357, 657, 842, 1165, 1251
BspLI	GGNNCC	5 cut(s)	29, 152, 808, 876, 896
BspMAI	CTGCAG	1 cut(s)	224
BspT104I	TTCGAA	1 cut(s)	1254
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	965
BssECI	CCNNGG	3 cut(s)	51, 453, 646
BssMI	GATC	2 cut(s)	1075, 1284
BssT1I	CCWWGG	3 cut(s)	51, 453, 646
Bst2UI	CCWGG	2 cut(s)	58, 879
Bst4CI	ACNGT	4 cut(s)	526, 766, 841, 1296
Bst6I	CTCTTC	3 cut(s)	521, 990, 1183
BstAUI	TGTACA	1 cut(s)	477
BstBI	TTCGAA	1 cut(s)	1254
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	8 cut(s)	118, 228, 365, 665, 829, 940, 1152, 1238
BstDSI	CCRYGG	1 cut(s)	453
BstENI	CCTNNNNNAGG	1 cut(s)	1121
BstF5I	GGATG	3 cut(s)	591, 918, 1271
BstH2I	RGCGCY	1 cut(s)	608
BstHHI	GCGC	3 cut(s)	197, 276, 607
BstKTI	GATC	2 cut(s)	1078, 1287
BstMBI	GATC	2 cut(s)	1075, 1284
BstMWI	GCNNNNNNNGC	5 cut(s)	233, 239, 242, 245, 815
BstNI	CCWGG	2 cut(s)	58, 879
BstSCI	CCNGG	2 cut(s)	56, 877
BstSFI	CTRYAG	1 cut(s)	220
BstSLI	GKGCMC	1 cut(s)	898
BstV1I	GCAGC	7 cut(s)	220, 223, 226, 229, 597, 1008, 1264
BstV2I	GAAGAC	2 cut(s)	611, 1050
BstX2I	RGATCY	1 cut(s)	1075
BstXI	CCANNNNNNTGG	1 cut(s)	1090
BstYI	RGATCY	1 cut(s)	1075
Bsu36I	CCTNAGG	1 cut(s)	665
BsuI	GTATCC	1 cut(s)	585
BsuRI	GGCC	4 cut(s)	56, 636, 809, 896
BtgI	CCRYGG	1 cut(s)	453
BtgZI	GCGATG	1 cut(s)	526
BtsCI	GGATG	3 cut(s)	591, 918, 1271
BtsIMutI	CAGTG	2 cut(s)	522, 1292
Cac8I	GCNNGC	1 cut(s)	609
CfoI	GCGC	3 cut(s)	197, 276, 607
Cfr13I	GGNCC	6 cut(s)	635, 650, 807, 875, 894, 895
Csp6I	GTAC	5 cut(s)	317, 478, 958, 1174, 1297
CspCI	CAANNNNNGTGG	2 cut(s)	309, 344
CviAII	CATG	6 cut(s)	185, 454, 469, 580, 697, 1131
CviQI	GTAC	5 cut(s)	317, 478, 958, 1174, 1297
DdeI	CTNAG	8 cut(s)	118, 228, 365, 665, 829, 940, 1152, 1238
DpnI	GATC	2 cut(s)	1077, 1286
DpnII	GATC	2 cut(s)	1075, 1284
Eam1104I	CTCTTC	3 cut(s)	521, 990, 1183
EarI	CTCTTC	3 cut(s)	521, 990, 1183
Eco130I	CCWWGG	3 cut(s)	51, 453, 646
Eco24I	GRGCYC	2 cut(s)	30, 898
Eco47I	GGWCC	2 cut(s)	650, 875
Eco47III	AGCGCT	1 cut(s)	606
Eco57I	CTGAAG	1 cut(s)	621
Eco81I	CCTNAGG	1 cut(s)	665
EcoNI	CCTNNNNNAGG	1 cut(s)	1121
EcoO109I	RGGNCCY	2 cut(s)	875, 895
EcoRII	CCWGG	2 cut(s)	56, 877
EcoT14I	CCWWGG	3 cut(s)	51, 453, 646
EcoT38I	GRGCYC	2 cut(s)	30, 898
ErhI	CCWWGG	3 cut(s)	51, 453, 646
FaeI	CATG	6 cut(s)	188, 457, 472, 583, 700, 1134
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FaqI	GGGAC	2 cut(s)	307, 1042
FatI	CATG	6 cut(s)	184, 453, 468, 579, 696, 1130
FauI	CCCGC	1 cut(s)	1001
FauNDI	CATATG	1 cut(s)	1099
Fnu4HI	GCNGC	8 cut(s)	234, 237, 240, 243, 246, 586, 997, 1278
FokI	GGATG	3 cut(s)	578, 925, 1278
FriOI	GRGCYC	2 cut(s)	30, 898
Fsp4HI	GCNGC	8 cut(s)	234, 237, 240, 243, 246, 586, 997, 1278
FspBI	CTAG	1 cut(s)	639
GlaI	GCGC	3 cut(s)	196, 275, 606
GluI	GCNGC	8 cut(s)	234, 237, 240, 243, 246, 586, 997, 1278
GsaI	CCCAGC	2 cut(s)	70, 126
GsuI	CTGGAG	1 cut(s)	900
HaeII	RGCGCY	1 cut(s)	608
HaeIII	GGCC	4 cut(s)	56, 636, 809, 896
HapII	CCGG	1 cut(s)	1209
HhaI	GCGC	3 cut(s)	197, 276, 607
Hin1II	CATG	6 cut(s)	188, 457, 472, 583, 700, 1134
Hin6I	GCGC	3 cut(s)	195, 274, 605
HinP1I	GCGC	3 cut(s)	195, 274, 605
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HinfI	GANTC	1 cut(s)	642
HpaII	CCGG	1 cut(s)	1209
HphI	GGTGA	5 cut(s)	272, 454, 940, 1053, 1202
Hpy166II	GTNNAC	4 cut(s)	480, 653, 769, 966
Hpy188I	TCNGA	3 cut(s)	756, 1073, 1307
Hpy188III	TCNNGA	4 cut(s)	154, 307, 364, 664
Hpy8I	GTNNAC	4 cut(s)	480, 653, 769, 966
HpyAV	CCTTC	3 cut(s)	81, 502, 1003
HpyCH4III	ACNGT	4 cut(s)	526, 766, 841, 1296
HpyCH4V	TGCA	4 cut(s)	222, 413, 659, 1097
HpyF10VI	GCNNNNNNNGC	5 cut(s)	233, 239, 242, 245, 815
HpyF3I	CTNAG	8 cut(s)	118, 228, 365, 665, 829, 940, 1152, 1238
Hsp92II	CATG	6 cut(s)	188, 457, 472, 583, 700, 1134
HspAI	GCGC	3 cut(s)	195, 274, 605
Kzo9I	GATC	2 cut(s)	1075, 1284
LmnI	GCTCC	4 cut(s)	33, 271, 675, 985
Lsp1109I	GCAGC	7 cut(s)	220, 223, 226, 229, 597, 1008, 1264
MaeI	CTAG	1 cut(s)	639
MaeIII	GTNAC	3 cut(s)	391, 1126, 1190
MalI	GATC	2 cut(s)	1077, 1286
MboI	GATC	2 cut(s)	1075, 1284
MflI	RGATCY	1 cut(s)	1075
MhlI	GDGCHC	2 cut(s)	30, 898
MluCI	AATT	8 cut(s)	158, 264, 352, 445, 704, 856, 868, 1244
MroXI	GAANNNNTTC	1 cut(s)	212
MseI	TTAA	3 cut(s)	83, 431, 905
MslI	CAYNNNNRTG	3 cut(s)	926, 1088, 1229
MspI	CCGG	1 cut(s)	1209
MspR9I	CCNGG	2 cut(s)	58, 879
MvaI	CCWGG	2 cut(s)	58, 879
MwoI	GCNNNNNNNGC	5 cut(s)	233, 239, 242, 245, 815
NcoI	CCATGG	1 cut(s)	453
NdeI	CATATG	1 cut(s)	1099
NdeII	GATC	2 cut(s)	1075, 1284
NlaIII	CATG	6 cut(s)	188, 457, 472, 583, 700, 1134
NlaIV	GGNNCC	5 cut(s)	29, 152, 808, 876, 896
NmuCI	GTSAC	1 cut(s)	1190
NspV	TTCGAA	1 cut(s)	1254
OliI	CACNNNNGTG	1 cut(s)	1088
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	642
PfoI	TCCNGGA	1 cut(s)	877
PkrI	GCNGC	8 cut(s)	235, 238, 241, 244, 247, 587, 998, 1279
PpuMI	RGGWCCY	1 cut(s)	875
Psp5II	RGGWCCY	1 cut(s)	875
Psp6I	CCWGG	2 cut(s)	56, 877
PspFI	CCCAGC	2 cut(s)	66, 122
PspGI	CCWGG	2 cut(s)	56, 877
PspN4I	GGNNCC	5 cut(s)	29, 152, 808, 876, 896
PspOMI	GGGCCC	1 cut(s)	894
PspPI	GGNCC	6 cut(s)	635, 650, 807, 875, 894, 895
PspPPI	RGGWCCY	1 cut(s)	875
PstI	CTGCAG	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	1075
RsaI	GTAC	5 cut(s)	318, 479, 959, 1175, 1298
RsaNI	GTAC	5 cut(s)	317, 478, 958, 1174, 1297
RseI	CAYNNNNRTG	3 cut(s)	926, 1088, 1229
SaqAI	TTAA	3 cut(s)	83, 431, 905
SatI	GCNGC	8 cut(s)	234, 237, 240, 243, 246, 586, 997, 1278
Sau3AI	GATC	2 cut(s)	1075, 1284
Sau96I	GGNCC	6 cut(s)	635, 650, 807, 875, 894, 895
ScaI	AGTACT	1 cut(s)	1175
ScrFI	CCNGG	2 cut(s)	58, 879
SduI	GDGCHC	2 cut(s)	30, 898
SfcI	CTRYAG	1 cut(s)	220
SfuI	TTCGAA	1 cut(s)	1254
SinI	GGWCC	2 cut(s)	650, 875
SmiMI	CAYNNNNRTG	3 cut(s)	926, 1088, 1229
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	8 cut(s)	158, 264, 352, 445, 704, 856, 868, 1244
SsiI	CCGC	2 cut(s)	245, 994
SspI	AATATT	1 cut(s)	814
SspMI	CTAG	1 cut(s)	639
StyD4I	CCNGG	2 cut(s)	56, 877
StyI	CCWWGG	3 cut(s)	51, 453, 646
TaaI	ACNGT	4 cut(s)	526, 766, 841, 1296
TaqI	TCGA	1 cut(s)	1254
TasI	AATT	8 cut(s)	158, 264, 352, 445, 704, 856, 868, 1244
TatI	WGTACW	4 cut(s)	477, 957, 1173, 1296
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	642
Tru1I	TTAA	3 cut(s)	83, 431, 905
Tru9I	TTAA	3 cut(s)	83, 431, 905
TscAI	CASTG	2 cut(s)	529, 1299
TseFI	GTSAC	1 cut(s)	1190
TseI	GCWGC	7 cut(s)	233, 236, 239, 242, 585, 996, 1277
Tsp45I	GTSAC	1 cut(s)	1190
TspDTI	ATGAA	3 cut(s)	457, 529, 556
TspRI	CASTG	2 cut(s)	529, 1299
VpaK11BI	GGWCC	2 cut(s)	650, 875
XagI	CCTNNNNNAGG	1 cut(s)	1121
XapI	RAATTY	3 cut(s)	158, 445, 868
XmnI	GAANNNNTTC	1 cut(s)	212
XspI	CTAG	1 cut(s)	639
ZrmI	AGTACT	1 cut(s)	1175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.