Rorug02G0350700
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009610
Physical Location & Seq
Reverse (-)
44065720 .. 44069159
3440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0350700.1

Sequence Viewer

Length: 408 bp
ATGACCCATCGAGCATCACTGACTTCGATCCATAGCTTTTCTTCCTTGCATAGTCTTCTTTTGCTGTTCTTAAGTGCTCAGGCTGTCTCTGGCTCCAGTATGCTCATAGAGTTCTCAACTCTGAAAGGTACCATCATGCCCATCTCCTTTACGTTTTGGGAAGGACTGAAAGATGGGACGGGGATGGCAGCATCCCCATCTCCTTTTCTCACGCCTCGGCCCGAAAAGCGGCGTGGTACTCTTGATTGGAATTCGAATCACAAGGATAAGGATAAGGAAGTTAATGTGCAAGTTGTGCTCAGATGCAGAGTCTATCATATGAAGTGTTTTCGTATTTCAAAACAACCATTACTTCTTCCTCACCAGCTCATCCAGAATTCATATTTCTGCAAGAACCAGGCCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005886 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007019 GO:0007049 GO:0007059 GO:0007080 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0008283 GO:0008608 GO:0009987 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019237 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0022411 GO:0030951 GO:0030952 GO:0031109 GO:0032984 GO:0032991 GO:0035371 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048002 GO:0048193 GO:0048285 GO:0050000 GO:0050789 GO:0050794 GO:0051010 GO:0051179 GO:0051234 GO:0051261 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051983 GO:0065007 GO:0071840 GO:0071944 GO:0097159 GO:0097435 GO:0098687 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1901363 GO:1903047 GO:1903338 GO:1990752 GO:1990837
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kinesin

Protein Analysis

135

Amino Acids

15.31

Weight (kDa)

9.9

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 128
AciI CCGC 1 cut(s) 229
AclWI GGATC 1 cut(s) 22
AcsI RAATTY 2 cut(s) 250, 376
AfaI GTAC 2 cut(s) 130, 238
AfiI CCNNNNNNNGG 1 cut(s) 228
AflII CTTAAG 1 cut(s) 70
AgsI TTSAA 1 cut(s) 339
AjnI CCWGG 1 cut(s) 396
AluBI AGCT 2 cut(s) 36, 367
AluI AGCT 2 cut(s) 36, 367
Alw21I GWGCWC 2 cut(s) 79, 300
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 1 cut(s) 22
AoxI GGCC 2 cut(s) 218, 399
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 2 cut(s) 250, 376
Asp718I GGTACC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 353
AsuII TTCGAA 1 cut(s) 254
BanI GGYRCC 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 47
Bbv12I GWGCWC 2 cut(s) 79, 300
BbvI GCAGC 1 cut(s) 200
BccI CCATC 6 cut(s) 15, 140, 149, 167, 178, 205
BciT130I CCWGG 1 cut(s) 398
BcoDI GTCTC 1 cut(s) 91
BfrI CTTAAG 1 cut(s) 70
BisI GCNGC 2 cut(s) 189, 230
BlsI GCNGC 2 cut(s) 190, 231
Bme1390I CCNGG 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 219
BmiI GGNNCC 2 cut(s) 94, 130
BmrFI CCNGG 1 cut(s) 398
BmsI GCATC 3 cut(s) 23, 200, 293
BpiI GAAGAC 1 cut(s) 47
BpmI CTGGAG 1 cut(s) 79
Bpu10I CCTNAGC 1 cut(s) 78
Bpu14I TTCGAA 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 215
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse1I ACTGG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 3 cut(s) 189, 191, 369
BseLI CCNNNNNNNGG 1 cut(s) 228
BseMII CTCAG 2 cut(s) 92, 313
BseNI ACTGG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 200
BshFI GGCC 2 cut(s) 220, 401
BshNI GGYRCC 1 cut(s) 128
BsiHKAI GWGCWC 2 cut(s) 79, 300
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 228
BsmAI GTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 190
BsnI GGCC 2 cut(s) 220, 401
Bsp119I TTCGAA 1 cut(s) 254
Bsp1286I GDGCHC 2 cut(s) 79, 300
Bsp143I GATC 1 cut(s) 27
BspACI CCGC 1 cut(s) 229
BspANI GGCC 2 cut(s) 220, 401
BspCNI CTCAG 2 cut(s) 91, 312
BspLI GGNNCC 2 cut(s) 94, 130
BspPI GGATC 1 cut(s) 22
BspT104I TTCGAA 1 cut(s) 254
BspT107I GGYRCC 1 cut(s) 128
BspTI CTTAAG 1 cut(s) 70
BsrI ACTGG 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 398
BstAFI CTTAAG 1 cut(s) 70
BstAPI GCANNNNNTGC 1 cut(s) 295
BstBI TTCGAA 1 cut(s) 254
BstDEI CTNAG 2 cut(s) 78, 299
BstF5I GGATG 3 cut(s) 189, 191, 369
BstKTI GATC 1 cut(s) 30
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 1 cut(s) 27
BstMWI GCNNNNNNNGC 2 cut(s) 226, 295
BstNI CCWGG 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 396
BstV1I GCAGC 1 cut(s) 200
BstV2I GAAGAC 1 cut(s) 47
BsuRI GGCC 2 cut(s) 220, 401
BtsCI GGATG 3 cut(s) 189, 191, 369
BtsIMutI CAGTG 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 219
Csp6I GTAC 2 cut(s) 129, 237
CviAII CATG 1 cut(s) 136
CviJI RGCY 6 cut(s) 36, 83, 93, 220, 367, 401
CviKI_1 RGCY 6 cut(s) 36, 83, 93, 220, 367, 401
CviQI GTAC 2 cut(s) 129, 237
DdeI CTNAG 2 cut(s) 78, 299
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
EcoRI GAATTC 2 cut(s) 250, 376
EcoRII CCWGG 1 cut(s) 396
FaeI CATG 1 cut(s) 139
FaiI YATR 8 cut(s) 33, 51, 101, 107, 137, 318, 320, 382
FaqI GGGAC 1 cut(s) 190
FatI CATG 1 cut(s) 135
FauNDI CATATG 1 cut(s) 318
Fnu4HI GCNGC 2 cut(s) 189, 230
FokI GGATG 3 cut(s) 178, 196, 356
Fsp4HI GCNGC 2 cut(s) 189, 230
GluI GCNGC 2 cut(s) 189, 230
GsuI CTGGAG 1 cut(s) 79
HaeIII GGCC 2 cut(s) 220, 401
Hin1II CATG 1 cut(s) 139
HinfI GANTC 2 cut(s) 256, 309
HphI GGTGA 1 cut(s) 353
Hpy188I TCNGA 2 cut(s) 123, 302
Hpy188III TCNNGA 2 cut(s) 242, 373
HpyAV CCTTC 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 4 cut(s) 49, 289, 306, 390
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 295
HpyF3I CTNAG 2 cut(s) 78, 299
HpySE526I ACGT 1 cut(s) 152
Hsp92II CATG 1 cut(s) 139
KpnI GGTACC 1 cut(s) 132
Kzo9I GATC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 6 cut(s) 65, 75, 109, 377, 383, 386
Lsp1109I GCAGC 1 cut(s) 200
LweI GCATC 3 cut(s) 23, 200, 293
MaeII ACGT 1 cut(s) 152
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MboII GAAGA 3 cut(s) 33, 47, 347
MhlI GDGCHC 2 cut(s) 79, 300
MluCI AATT 2 cut(s) 250, 376
MlyI GAGTC 1 cut(s) 318
MnlI CCTC 2 cut(s) 225, 369
MseI TTAA 2 cut(s) 71, 282
MspCI CTTAAG 1 cut(s) 70
MspR9I CCNGG 1 cut(s) 398
MvaI CCWGG 1 cut(s) 398
MwoI GCNNNNNNNGC 2 cut(s) 226, 295
NdeI CATATG 1 cut(s) 318
NdeII GATC 1 cut(s) 27
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 2 cut(s) 94, 130
NmeAIII GCCGAG 1 cut(s) 196
NspV TTCGAA 1 cut(s) 254
PfeI GAWTC 1 cut(s) 256
PkrI GCNGC 2 cut(s) 190, 231
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 396
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 2 cut(s) 94, 130
PspPI GGNCC 1 cut(s) 219
RsaI GTAC 2 cut(s) 130, 238
RsaNI GTAC 2 cut(s) 129, 237
SaqAI TTAA 2 cut(s) 71, 282
SatI GCNGC 2 cut(s) 189, 230
Sau3AI GATC 1 cut(s) 27
Sau96I GGNCC 1 cut(s) 219
SchI GAGTC 1 cut(s) 318
ScrFI CCNGG 1 cut(s) 398
SduI GDGCHC 2 cut(s) 79, 300
SetI ASST 4 cut(s) 38, 130, 155, 369
SfaNI GCATC 3 cut(s) 23, 200, 293
SfuI TTCGAA 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
Sse9I AATT 2 cut(s) 250, 376
SsiI CCGC 1 cut(s) 229
StyD4I CCNGG 1 cut(s) 396
TaiI ACGT 1 cut(s) 155
TaqI TCGA 3 cut(s) 10, 26, 254
TasI AATT 2 cut(s) 250, 376
TauI GCSGC 1 cut(s) 232
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 2 cut(s) 71, 282
Tru9I TTAA 2 cut(s) 71, 282
TscAI CASTG 1 cut(s) 24
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 2 cut(s) 335, 369
TspRI CASTG 1 cut(s) 24
Vha464I CTTAAG 1 cut(s) 70
XapI RAATTY 2 cut(s) 250, 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.