Rorug02G0470000

Cytosolic domain of 10TM putative phosphate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007600
Physical Location & Seq
Forward (+)
60097893 .. 60101398
3506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0470000.1

Sequence Viewer

Length: 1398 bp
ATGGCCAAGTCTGGGTCTTCACTGAATTACTGGAGGAATTATTTCCGGACGGCGAATTCGGACATTTTCGGCATCATTGACCATGCCATCATGGTTGCCGCTGTGGATTGTCCCAAGGAGTTCAGGTTGCGGAGGGATCGAGTTGCTGAGCTCTTGTTTTCGTGTAGGATGAGCAGGTGTTCGGGTTGCGAAAAGGTGGAGTTGGTGGTGCCTGGTGGTCATGGTCATGATGATCACTATGAGGTGGAGCATGATGATGATGATGATGATGATCGAGGTGATAGAGATTTTGAGGCCGGGGCTAGTAAAGAGAGCAAGGTCAATAGCAGCAGAGATGATCAGATTGGTGAGATGAGCATGAAGAATGATCAGGATAGCAATTACAGCTATGGATTGGCTGAGGCTTTGACCGATGAGATTGAACAAGAGTCTCAGGTTATCGGGGAGGTTTTGAGGATCAAAGAGATCTTCCAGAATAGTGAACAAGAGTCTGATGCTGTATTGTTTGAGTCGTTGAGGAAGCTTGAATTGATGGCTCTGTCTGTGGAGACTCTCAAGGCAACTGAGATTGGGAAGCCTGTTAACCGGCTAAGAAAGCATGGATCAATGAAGATTCGCAATCTTGTTCGAACACTAATTGATGGGTGGAAAGTCATGGTAGATGAATGGGTCAATGCTACTACAGCTATTGCTTCTGGGGGAACAGAAGTTATTTCGGATTCTGTTGATCCATCAGTTGATGATGACTTTGAAGAAGGACTTCCCACTCCTCCATTGGATGAAGGAGCTTTCTTTGCCACTCAAACCACCTCAATGGAACTCTCTGAGTTCTTTGATGGTATGGAAGATTATGGGAATCCTCGAAACAGTGGGCAATATACCAGGAATCGTGAAAATGGAAGAAAACCATCACTGGAGAAACAAAATGTTGTGAAGCAGGAACAACAGTATGTTAGTGATCAGGGAAATGTGCTTCCCAAGAAAATAAAAAGTGAATCAGTGATGGTCAAACAAGAAGTTGATGTGAAGCCAAATAGGCCCTCAAACACCAACTCTGGCCCTCGGAGACCTCCCAAAATAAGTATGGAGCGAAAGGGTGTCAGTAGTGTAACAAATATTGAACAAAGAACAGATAAGGTTTCCATTCAGAAGAGGCAACTCACTGGTCAGCAGCAAGATAAATACAAGTGTTCAGATGAAGTTGCAGTGCAAGTGAAGCTTGAAGCCACAAAAAGGAAACTCCAGGAGAGTTATCAACAAGCTGAGAATGCCAAGAAGCAACGGACAGTACAGGTAATGGAATTGCATGATCTACCCAAGCAGGGGCTTGGCCATAGGAATCCACATTTAAAACCTGGAAACCACAATCGGCAAAGGGCACATGGGCGGAGATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

465

Amino Acids

52.7

Weight (kDa)

5.71

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med26 PF08711 171 - 220 1.7e-12 TFIIS helical bundle-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 165
Acc36I ACCTGC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 208
AccIII TCCGGA 1 cut(s) 45
AciI CCGC 3 cut(s) 99, 130, 1387
AclWI GGATC 4 cut(s) 144, 464, 610, 722
AcoI YGGCCR 2 cut(s) 3, 1330
AcsI RAATTY 1 cut(s) 55
AfaI GTAC 1 cut(s) 1290
AfiI CCNNNNNNNGG 4 cut(s) 12, 1233, 1322, 1323
AgsI TTSAA 5 cut(s) 422, 527, 752, 1121, 1223
AjnI CCWGG 4 cut(s) 211, 881, 1242, 1354
AluBI AGCT 7 cut(s) 151, 387, 523, 686, 788, 1219, 1262
AluI AGCT 7 cut(s) 151, 387, 523, 686, 788, 1219, 1262
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 3 cut(s) 435, 542, 1060
AlwI GGATC 4 cut(s) 144, 464, 610, 722
Aor13HI TCCGGA 1 cut(s) 45
AoxI GGCC 5 cut(s) 3, 294, 1037, 1057, 1330
ApeKI GCWGC 2 cut(s) 327, 1171
ApoI RAATTY 1 cut(s) 55
ArsI GACNNNNNNTTYG 2 cut(s) 40, 72
Asp700I GAANNNNTTC 2 cut(s) 41, 759
AspS9I GGNCC 2 cut(s) 1038, 1058
AsuC2I CCSGG 1 cut(s) 298
AsuHPI GGTGA 2 cut(s) 290, 359
AsuII TTCGAA 1 cut(s) 628
BaeGI GKGCMC 1 cut(s) 1381
BalI TGGCCA 2 cut(s) 5, 1332
BanI GGYRCC 1 cut(s) 208
BanII GRGCYC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 153
BbvCI CCTCAGC 1 cut(s) 399
BbvI GCAGC 2 cut(s) 339, 1183
BccI CCATC 7 cut(s) 95, 526, 635, 739, 830, 916, 997
BceAI ACGGC 1 cut(s) 66
BciT130I CCWGG 4 cut(s) 213, 883, 1244, 1356
BclI TGATCA 4 cut(s) 232, 337, 367, 958
BcnI CCSGG 1 cut(s) 298
BcoDI GTCTC 3 cut(s) 435, 542, 1060
BfaI CTAG 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 681
BfuAI ACCTGC 1 cut(s) 165
BglI GCCNNNNNGGC 1 cut(s) 1036
BglII AGATCT 1 cut(s) 465
BisI GCNGC 3 cut(s) 99, 328, 1172
BlpI GCTNAGC 1 cut(s) 147
BlsI GCNGC 3 cut(s) 100, 329, 1173
Bme1390I CCNGG 5 cut(s) 213, 298, 883, 1244, 1356
BmgT120I GGNCC 2 cut(s) 1038, 1058
BmiI GGNNCC 1 cut(s) 210
BmrFI CCNGG 5 cut(s) 213, 298, 883, 1244, 1356
BmsI GCATC 2 cut(s) 81, 484
BpiI GAAGAC 1 cut(s) 9
BpmI CTGGAG 3 cut(s) 52, 935, 1226
Bpu10I CCTNAGC 1 cut(s) 399
Bpu1102I GCTNAGC 1 cut(s) 147
Bpu14I TTCGAA 1 cut(s) 628
BpuEI CTTGAG 1 cut(s) 539
BpuMI CCSGG 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 1060
BsaJI CCNNGG 3 cut(s) 114, 297, 1061
BsaWI WCCGGW 1 cut(s) 45
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 4 cut(s) 12, 1233, 1322, 1323
Bse118I RCCGGY 1 cut(s) 585
Bse1I ACTGG 3 cut(s) 35, 918, 1168
Bse8I GATNNNNATC 1 cut(s) 270
BseAI TCCGGA 1 cut(s) 45
BseBI CCWGG 4 cut(s) 213, 883, 1244, 1356
BseDI CCNNGG 3 cut(s) 114, 297, 1061
BseGI GGATG 2 cut(s) 174, 784
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 4 cut(s) 12, 1233, 1322, 1323
BseMII CTCAG 6 cut(s) 138, 390, 446, 555, 816, 1254
BseNI ACTGG 3 cut(s) 35, 918, 1168
BseRI GAGGAG 1 cut(s) 759
BseSI GKGCMC 1 cut(s) 1381
BseXI GCAGC 2 cut(s) 339, 1183
BshFI GGCC 5 cut(s) 5, 296, 1039, 1059, 1332
BshNI GGYRCC 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 3 cut(s) 46, 297, 586
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 4 cut(s) 12, 1233, 1322, 1323
BsmAI GTCTC 3 cut(s) 435, 542, 1060
BsmFI GGGAC 1 cut(s) 96
BsmI GAATGC 1 cut(s) 1273
BsnI GGCC 5 cut(s) 5, 296, 1039, 1059, 1332
Bso31I GGTCTC 1 cut(s) 1060
Bsp119I TTCGAA 1 cut(s) 628
Bsp1286I GDGCHC 2 cut(s) 153, 1381
Bsp13I TCCGGA 1 cut(s) 45
Bsp1720I GCTNAGC 1 cut(s) 147
BspACI CCGC 3 cut(s) 99, 130, 1387
BspANI GGCC 5 cut(s) 5, 296, 1039, 1059, 1332
BspCNI CTCAG 6 cut(s) 139, 391, 445, 556, 817, 1255
BspEI TCCGGA 1 cut(s) 45
BspHI TCATGA 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 210
BspMI ACCTGC 1 cut(s) 165
BspPI GGATC 4 cut(s) 144, 464, 610, 722
BspT104I TTCGAA 1 cut(s) 628
BspT107I GGYRCC 1 cut(s) 208
BspTNI GGTCTC 1 cut(s) 1060
BsrFI RCCGGY 1 cut(s) 585
BsrI ACTGG 3 cut(s) 35, 918, 1168
BssAI RCCGGY 1 cut(s) 585
BssECI CCNNGG 3 cut(s) 114, 297, 1061
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 4 cut(s) 213, 883, 1244, 1356
Bst4CI ACNGT 3 cut(s) 869, 948, 1288
Bst6I CTCTTC 1 cut(s) 1145
BstBI TTCGAA 1 cut(s) 628
BstDEI CTNAG 7 cut(s) 147, 399, 432, 564, 590, 825, 1263
BstF5I GGATG 2 cut(s) 174, 784
BstMAI GTCTC 3 cut(s) 435, 542, 1060
BstMWI GCNNNNNNNGC 7 cut(s) 384, 595, 683, 794, 1036, 1216, 1268
BstNI CCWGG 4 cut(s) 213, 883, 1244, 1356
BstSCI CCNGG 5 cut(s) 211, 296, 881, 1242, 1354
BstSFI CTRYAG 1 cut(s) 681
BstSLI GKGCMC 1 cut(s) 1381
BstV1I GCAGC 2 cut(s) 339, 1183
BstV2I GAAGAC 1 cut(s) 9
BstX2I RGATCY 1 cut(s) 465
BstXI CCANNNNNNTGG 1 cut(s) 814
BstYI RGATCY 1 cut(s) 465
BsuRI GGCC 5 cut(s) 5, 296, 1039, 1059, 1332
BtsCI GGATG 2 cut(s) 174, 784
BtsI GCAGTG 1 cut(s) 1212
BtsIMutI CAGTG 6 cut(s) 20, 874, 911, 1005, 1161, 1212
BveI ACCTGC 1 cut(s) 165
CciI TCATGA 1 cut(s) 226
Cfr10I RCCGGY 1 cut(s) 585
Cfr13I GGNCC 2 cut(s) 1038, 1058
Csp6I GTAC 1 cut(s) 1289
CviQI GTAC 1 cut(s) 1289
DdeI CTNAG 7 cut(s) 147, 399, 432, 564, 590, 825, 1263
DraI TTTAAA 1 cut(s) 1350
EaeI YGGCCR 2 cut(s) 3, 1330
Eam1104I CTCTTC 1 cut(s) 1145
EarI CTCTTC 1 cut(s) 1145
Ecl136II GAGCTC 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 1060
Eco53kI GAGCTC 1 cut(s) 151
EcoICRI GAGCTC 1 cut(s) 151
EcoO109I RGGNCCY 1 cut(s) 1038
EcoRI GAATTC 1 cut(s) 55
EcoRII CCWGG 4 cut(s) 211, 881, 1242, 1354
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 114
FalI AAGNNNNNCTT 4 cut(s) 744, 776, 1203, 1235
FaqI GGGAC 1 cut(s) 96
FbaI TGATCA 4 cut(s) 232, 337, 367, 958
Fnu4HI GCNGC 3 cut(s) 99, 328, 1172
FokI GGATG 2 cut(s) 181, 791
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 3 cut(s) 99, 328, 1172
FspBI CTAG 1 cut(s) 303
GluI GCNGC 3 cut(s) 99, 328, 1172
GsuI CTGGAG 3 cut(s) 52, 935, 1226
HaeIII GGCC 5 cut(s) 5, 296, 1039, 1059, 1332
HapII CCGG 3 cut(s) 46, 297, 586
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HindIII AAGCTT 2 cut(s) 521, 1217
HpaI GTTAAC 1 cut(s) 583
HpaII CCGG 3 cut(s) 46, 297, 586
HphI GGTGA 2 cut(s) 290, 359
Hpy166II GTNNAC 2 cut(s) 482, 583
Hpy188I TCNGA 9 cut(s) 61, 342, 493, 718, 826, 1065, 1149, 1195, 1397
Hpy188III TCNNGA 5 cut(s) 46, 227, 371, 472, 890
Hpy8I GTNNAC 2 cut(s) 482, 583
HpyAV CCTTC 2 cut(s) 749, 776
HpyCH4III ACNGT 3 cut(s) 869, 948, 1288
HpyCH4V TGCA 3 cut(s) 1205, 1210, 1306
HpyF10VI GCNNNNNNNGC 7 cut(s) 384, 595, 683, 794, 1036, 1216, 1268
HpyF3I CTNAG 7 cut(s) 147, 399, 432, 564, 590, 825, 1263
Kpn2I TCCGGA 1 cut(s) 45
Ksp22I TGATCA 4 cut(s) 232, 337, 367, 958
KspAI GTTAAC 1 cut(s) 583
LmnI GCTCC 3 cut(s) 247, 785, 1087
Lsp1109I GCAGC 2 cut(s) 339, 1183
LweI GCATC 2 cut(s) 81, 484
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 1108
MboII GAAGA 8 cut(s) 9, 373, 460, 622, 764, 857, 912, 1162
MflI RGATCY 1 cut(s) 465
MhlI GDGCHC 2 cut(s) 153, 1381
MlsI TGGCCA 2 cut(s) 5, 1332
MluCI AATT 7 cut(s) 25, 37, 55, 379, 527, 636, 1301
MluNI TGGCCA 2 cut(s) 5, 1332
MlyI GAGTC 4 cut(s) 437, 497, 518, 544
Mox20I TGGCCA 2 cut(s) 5, 1332
MroI TCCGGA 1 cut(s) 45
MroXI GAANNNNTTC 2 cut(s) 41, 759
MscI TGGCCA 2 cut(s) 5, 1332
MseI TTAA 2 cut(s) 582, 1349
MslI CAYNNNNRTG 3 cut(s) 225, 255, 812
Msp20I TGGCCA 2 cut(s) 5, 1332
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 3 cut(s) 46, 297, 586
MspR9I CCNGG 5 cut(s) 213, 298, 883, 1244, 1356
Mva1269I GAATGC 1 cut(s) 1273
MvaI CCWGG 4 cut(s) 213, 883, 1244, 1356
MwoI GCNNNNNNNGC 7 cut(s) 384, 595, 683, 794, 1036, 1216, 1268
NciI CCSGG 1 cut(s) 298
NlaIV GGNNCC 1 cut(s) 210
NspV TTCGAA 1 cut(s) 628
PagI TCATGA 1 cut(s) 226
PaqCI CACCTGC 1 cut(s) 165
PctI GAATGC 1 cut(s) 1273
PdmI GAANNNNTTC 2 cut(s) 41, 759
PfeI GAWTC 7 cut(s) 613, 719, 856, 886, 995, 1339, 1392
PfoI TCCNGGA 1 cut(s) 1242
PkrI GCNGC 3 cut(s) 100, 329, 1173
PleI GAGTC 4 cut(s) 436, 496, 517, 544
PpsI GAGTC 4 cut(s) 436, 496, 517, 544
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 4 cut(s) 211, 881, 1242, 1354
PspGI CCWGG 4 cut(s) 211, 881, 1242, 1354
PspN4I GGNNCC 1 cut(s) 210
PspPI GGNCC 2 cut(s) 1038, 1058
PsuI RGATCY 1 cut(s) 465
RsaI GTAC 1 cut(s) 1290
RsaNI GTAC 1 cut(s) 1289
RseI CAYNNNNRTG 3 cut(s) 225, 255, 812
SacI GAGCTC 1 cut(s) 153
SaqAI TTAA 2 cut(s) 582, 1349
SatI GCNGC 3 cut(s) 99, 328, 1172
Sau96I GGNCC 2 cut(s) 1038, 1058
SchI GAGTC 4 cut(s) 437, 497, 518, 544
ScrFI CCNGG 5 cut(s) 213, 298, 883, 1244, 1356
SduI GDGCHC 2 cut(s) 153, 1381
SfaNI GCATC 2 cut(s) 81, 484
SfcI CTRYAG 1 cut(s) 681
SfuI TTCGAA 1 cut(s) 628
SmiMI CAYNNNNRTG 3 cut(s) 225, 255, 812
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
Sse9I AATT 7 cut(s) 25, 37, 55, 379, 527, 636, 1301
SsiI CCGC 3 cut(s) 99, 130, 1387
SspI AATATT 1 cut(s) 1117
SspMI CTAG 1 cut(s) 303
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 5 cut(s) 211, 296, 881, 1242, 1354
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 3 cut(s) 869, 948, 1288
TaqI TCGA 4 cut(s) 139, 274, 628, 862
TaqII GACCGA 1 cut(s) 425
TasI AATT 7 cut(s) 25, 37, 55, 379, 527, 636, 1301
TatI WGTACW 1 cut(s) 1288
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 7 cut(s) 613, 719, 856, 886, 995, 1339, 1392
Tru1I TTAA 2 cut(s) 582, 1349
Tru9I TTAA 2 cut(s) 582, 1349
TscAI CASTG 6 cut(s) 27, 874, 918, 1005, 1168, 1212
TseI GCWGC 2 cut(s) 327, 1171
TspDTI ATGAA 5 cut(s) 374, 623, 678, 795, 1212
TspGWI ACGGA 1 cut(s) 1297
TspRI CASTG 6 cut(s) 27, 874, 918, 1005, 1168, 1212
XapI RAATTY 1 cut(s) 55
XcmI CCANNNNNNNNNTGG 2 cut(s) 772, 1081
XmnI GAANNNNTTC 2 cut(s) 41, 759
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.