Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007600

Physical Location & Seq

Genomic Coordinates Forward (+)

60126702 .. 60127069

Gene Structure 368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0470300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGAGAACTACGAGGATGAGGTGAAGACACTCACGAAGGAGGAATATATACCGGCTGATGGAAGGTCCTCAGCTTTGGTGGAGTTTCTCCCGCAAGATATTGTCAATGGAAATTTGGACAGAGTGAAAGAATGTGTGGCCATGCATAGCCGAGAATATTGGCGGAGAAGACGGCAGAGTTTCACTCATCAACGCTATTGGCCGGGAAGAAAAGACGCCTCTTTTCACTGCTCTAGAGTACTACGAGAAGGCCAAAGAATGATTCCATTACTTGATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

93

Amino Acids

11.1

Weight (kDa)

7.82

Isoelectric Point (pI)

61.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21620 AT4G15430 AT4G15430
fragaria_vesca	FvH4_6g42670 FvH4_6g42670 FvH4_6g42670
malus_domestica	MD17G1101500.v1.1
prunus_persica	Prupe.3G213400_v2.0.a1 Prupe.3G213400_v2.0.a1 Prupe.3G213400_v2.0.a1
pyrus_communis	pycom17g09590
rosa_chinensis	RchiOBHm_Chr2g0158571
rosa_laevigata	RLG00000021096
rosa_multiflora	Rmu_sc0004188.1_g000021
rosa_roxburghii	Rroxscaffold_2G00091210
rosa_rugosa	Rorug02G0470000 Rorug02G0470100 Rorug02G0470100 Rorug02G0470200 Rorug02G0470300 Rorug02G0470400
rosa_samantha	Rh2CG519900 Rh2DG559000
rosa_wichuraiana	Rw2G044390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	92, 163
AcoI	YGGCCR	2 cut(s)	138, 200
AcsI	RAATTY	1 cut(s)	112
AcyI	GRCGYC	1 cut(s)	216
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	59
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
AoxI	GGCC	3 cut(s)	138, 200, 250
ApoI	RAATTY	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	66
BalI	TGGCCA	1 cut(s)	140
BbsI	GAAGAC	2 cut(s)	32, 175
BbvCI	CCTCAGC	1 cut(s)	70
BccI	CCATC	2 cut(s)	53, 269
BceAI	ACGGC	1 cut(s)	188
BcnI	CCSGG	1 cut(s)	204
BfaI	CTAG	1 cut(s)	234
BmcAI	AGTACT	1 cut(s)	240
Bme1390I	CCNGG	1 cut(s)	204
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	204
BpiI	GAAGAC	2 cut(s)	32, 175
BplI	GAGNNNNNCTC	2 cut(s)	169, 201
Bpu10I	CCTNAGC	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse118I	RCCGGY	1 cut(s)	52
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	84
BshFI	GGCC	3 cut(s)	140, 202, 252
BsiSI	CCGG	2 cut(s)	53, 203
BslI	CCNNNNNNNGG	1 cut(s)	59
BsnI	GGCC	3 cut(s)	140, 202, 252
BspACI	CCGC	2 cut(s)	92, 163
BspANI	GGCC	3 cut(s)	140, 202, 252
BspCNI	CTCAG	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	52
BssNI	GRCGYC	1 cut(s)	216
BstACI	GRCGYC	1 cut(s)	216
BstDEI	CTNAG	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	202
BstV2I	GAAGAC	2 cut(s)	32, 175
BsuRI	GGCC	3 cut(s)	140, 202, 252
BtsCI	GGATG	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	226
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	66
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	6 cut(s)	56, 74, 140, 150, 202, 252
CviKI_1	RGCY	6 cut(s)	56, 74, 140, 150, 202, 252
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	1 cut(s)	70
EaeI	YGGCCR	2 cut(s)	138, 200
EciI	GGCGGA	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	66
EcoO109I	RGGNCCY	1 cut(s)	66
EcoT22I	ATGCAT	1 cut(s)	147
FaeI	CATG	1 cut(s)	145
FaiI	YATR	4 cut(s)	48, 50, 143, 147
FatI	CATG	1 cut(s)	141
FauI	CCCGC	1 cut(s)	99
FokI	GGATG	1 cut(s)	29
FspBI	CTAG	1 cut(s)	234
HaeIII	GGCC	3 cut(s)	140, 202, 252
HapII	CCGG	2 cut(s)	53, 203
HgaI	GACGC	1 cut(s)	224
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	1 cut(s)	145
HinfI	GANTC	1 cut(s)	262
HpaII	CCGG	2 cut(s)	53, 203
HphI	GGTGA	1 cut(s)	34
Hpy188III	TCNNGA	2 cut(s)	34, 234
HpyAV	CCTTC	3 cut(s)	31, 57, 242
HpyCH4V	TGCA	1 cut(s)	145
HpyF3I	CTNAG	1 cut(s)	70
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	145
LpnPI	CCDG	2 cut(s)	66, 216
MaeI	CTAG	1 cut(s)	234
MboII	GAAGA	3 cut(s)	37, 180, 219
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	1 cut(s)	112
MluNI	TGGCCA	1 cut(s)	140
MnlI	CCTC	5 cut(s)	7, 13, 34, 79, 229
Mox20I	TGGCCA	1 cut(s)	140
Mph1103I	ATGCAT	1 cut(s)	147
MscI	TGGCCA	1 cut(s)	140
Msp20I	TGGCCA	1 cut(s)	140
MspI	CCGG	2 cut(s)	53, 203
MspR9I	CCNGG	1 cut(s)	204
NciI	CCSGG	1 cut(s)	204
NlaIII	CATG	1 cut(s)	145
NmeAIII	GCCGAG	1 cut(s)	176
NsiI	ATGCAT	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	262
PpuMI	RGGWCCY	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	66
PspPPI	RGGWCCY	1 cut(s)	66
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
Sau96I	GGNCC	1 cut(s)	66
ScaI	AGTACT	1 cut(s)	240
ScrFI	CCNGG	1 cut(s)	204
SetI	ASST	3 cut(s)	24, 68, 76
SinI	GGWCC	1 cut(s)	66
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	2 cut(s)	92, 163
SspI	AATATT	1 cut(s)	158
SspMI	CTAG	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	202
TasI	AATT	1 cut(s)	112
TatI	WGTACW	1 cut(s)	238
TfiI	GAWTC	1 cut(s)	262
TscAI	CASTG	1 cut(s)	233
TspRI	CASTG	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	1 cut(s)	112
XbaI	TCTAGA	1 cut(s)	233
XspI	CTAG	1 cut(s)	234
ZrmI	AGTACT	1 cut(s)	240
Zsp2I	ATGCAT	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.