Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0016571

Physical Location & Seq

Genomic Coordinates Reverse (-)

65644890 .. 65647424

Gene Structure 2535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0526300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGCACATTGCCCATTTTATATATTTATGTACCAATTTTATTGTTTTAATCTGGGCACCTGCAGTCACAGCTCTTCAAGAGCTTTACAAGTCCCTTAACACACCACCACAGCTGACCGGTTGGAGATTGGATGGTGGGGATCCTTGCTATGAATCATGGAATGGAGTGTCCTGTTTTGGCTCTTCTGTGATGTACCTTGAGCTTTATGGTCTAGACCTCTCTGGGTCTATTACTGCCGCGCTGTATAATCTGAAAAAATTGAAGCAACTGGATATTAGTTCCAATAGCATTGGTGGTGAACTTCCATATGTGTTACCCCCTCATGCAACTCATATAAATATGGCACGCAACAAATTCACTGGAAATATCCCCCAGAGTTTATCTGACATGAAATATCTTGTGTATTTGAATCTAAGCCGCAATTTGTTATCAGGACCCATTGGCAATGTTTTTAATGGCCTACAAAGGCTAAGGCAATTGGATTTGTCTTATAATAATTTTACTGGAGATGTGTGCAGCTCATTTGGATCTCTTACTAATCTCACTGGATTGTACTTGCAGAATAACCAATTCACTGCATCAGTTGTTTATCCAGTAATGGATATGAAAATCCAAGAAAACTATGGTGTCGTCCCAAACCATTTTCAGTCCGTACCAAATTTGTGGATCGGGGGTAATAGTTGTGAAGTATCGGGGAACAACTGTCCACCCTGGGATGTTCCTCTGGAAACCAAGGCAAGGGACTCAGAACAAAACACCTATCTCCCTCCAGCAACTCAGTCAAGCGTTAAGAACTCAGGACACAAGAATAAGAAGTTTGGAATATTCGTCACTATAATTGGTTGCATCGTGGCGGCAGCTGCAGCCATAGCATGCATGGCAGCCCGCCAGGACGCAAACAATGAACCACCACCTGAGCAGCCCTCTCGGCTTCAATTTTGTCCCCCGAGGCCACCTGAGAGGCTAGAACTCGATGGAAGGTTCATTGCAGGACAGAACTACGAAATAATTGTCGCTGGTAAAGCCTATCATGCTGATACAGAAGAAAAAGTAGTGAAGAAAGCAAAGAAAGACCAAGAGCCGGAGGAACCCCCCCCCACAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

368

Amino Acids

40.59

Weight (kDa)

6.18

Isoelectric Point (pI)

51.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	22 - 58	9e-08	Leucine rich repeat N-terminal domain
LRR_8	PF13855	150 - 191	2.1e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29230
fragaria_vesca	FvH4_6g47760
malus_domestica	MD17G1054700.v1.1
prunus_persica	Prupe.3G261400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0166911
rosa_laevigata	RLG00000021678
rosa_multiflora	Rmu_sc0002735.1_g000016 Rmu_sc0005344.1_g000009
rosa_roxburghii	Rroxscaffold_2G00084020
rosa_rugosa	Rorug02G0526300
rosa_samantha	Rh2BG604800 Rh2CG575500 Rh2DG616400
rosa_wichuraiana	Rw2G049390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	492
AarI	CACCTGC	1 cut(s)	67
Acc36I	ACCTGC	1 cut(s)	67
AccB1I	GGYRCC	1 cut(s)	55
AccII	CGCG	1 cut(s)	239
AciI	CCGC	4 cut(s)	237, 418, 854, 886
AclWI	GGATC	4 cut(s)	134, 147, 535, 674
AcsI	RAATTY	2 cut(s)	353, 658
AfaI	GTAC	4 cut(s)	31, 194, 554, 654
AfiI	CCNNNNNNNGG	2 cut(s)	738, 1081
AgeI	ACCGGT	1 cut(s)	116
AgsI	TTSAA	4 cut(s)	77, 262, 409, 935
AjnI	CCWGG	2 cut(s)	710, 888
AluBI	AGCT	6 cut(s)	71, 82, 112, 202, 519, 860
AluI	AGCT	6 cut(s)	71, 82, 112, 202, 519, 860
AlwI	GGATC	4 cut(s)	134, 147, 535, 674
Ama87I	CYCGRG	1 cut(s)	946
AoxI	GGCC	2 cut(s)	457, 950
ApeKI	GCWGC	6 cut(s)	516, 857, 860, 863, 881, 919
ApoI	RAATTY	2 cut(s)	353, 658
ArsI	GACNNNNNNTTYG	2 cut(s)	996, 1028
AsiGI	ACCGGT	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	308
AvaI	CYCGRG	1 cut(s)	946
AvaII	GGWCC	1 cut(s)	434
BaeGI	GKGCMC	1 cut(s)	58
BamHI	GGATCC	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	55
BbvI	GCAGC	6 cut(s)	528, 847, 869, 875, 893, 931
BccI	CCATC	2 cut(s)	125, 968
BcgI	CGANNNNNNTGC	2 cut(s)	908, 942
BciT130I	CCWGG	2 cut(s)	712, 890
BfaI	CTAG	2 cut(s)	212, 965
BfmI	CTRYAG	2 cut(s)	60, 861
BfuAI	ACCTGC	1 cut(s)	67
BglI	GCCNNNNNGGC	1 cut(s)	928
BisI	GCNGC	9 cut(s)	237, 418, 517, 855, 858, 861, 864, 882, 920
BlsI	GCNGC	9 cut(s)	238, 419, 518, 856, 859, 862, 865, 883, 921
Bme1390I	CCNGG	2 cut(s)	712, 890
Bme18I	GGWCC	1 cut(s)	434
BmeT110I	CYCGRG	1 cut(s)	946
BmgT120I	GGNCC	1 cut(s)	434
BmiI	GGNNCC	4 cut(s)	57, 141, 436, 1089
BmrFI	CCNGG	2 cut(s)	712, 890
BmsI	GCATC	2 cut(s)	587, 855
BplI	GAGNNNNNCTC	2 cut(s)	908, 940
BpmI	CTGGAG	2 cut(s)	525, 753
Bpu10I	CCTNAGC	2 cut(s)	470, 915
BpuEI	CTTGAG	1 cut(s)	218
BsaJI	CCNNGG	4 cut(s)	710, 711, 732, 947
BsaWI	WCCGGW	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	2 cut(s)	738, 1081
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	5 cut(s)	273, 364, 508, 550, 593
Bse3DI	GCAATG	3 cut(s)	6, 451, 984
BseBI	CCWGG	2 cut(s)	712, 890
BseDI	CCNNGG	4 cut(s)	710, 711, 732, 947
BseGI	GGATG	2 cut(s)	136, 721
BseLI	CCNNNNNNNGG	2 cut(s)	738, 1081
BseMI	GCAATG	3 cut(s)	6, 451, 984
BseMII	CTCAG	5 cut(s)	759, 791, 810, 906, 948
BseNI	ACTGG	5 cut(s)	273, 364, 508, 550, 593
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	6 cut(s)	528, 847, 869, 875, 893, 931
BsgI	GTGCAG	1 cut(s)	535
Bsh1236I	CGCG	1 cut(s)	239
BshFI	GGCC	2 cut(s)	459, 952
BshNI	GGYRCC	1 cut(s)	55
BshTI	ACCGGT	1 cut(s)	116
BsiHKCI	CYCGRG	1 cut(s)	946
BsiSI	CCGG	2 cut(s)	117, 1082
BslFI	GGGAC	4 cut(s)	76, 617, 755, 927
BslI	CCNNNNNNNGG	2 cut(s)	738, 1081
BsmFI	GGGAC	4 cut(s)	76, 617, 755, 927
BsnI	GGCC	2 cut(s)	459, 952
BsoBI	CYCGRG	1 cut(s)	946
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	3 cut(s)	139, 527, 666
BspACI	CCGC	4 cut(s)	237, 418, 854, 886
BspANI	GGCC	2 cut(s)	459, 952
BspCNI	CTCAG	5 cut(s)	758, 790, 809, 907, 949
BspFNI	CGCG	1 cut(s)	239
BspLI	GGNNCC	4 cut(s)	57, 141, 436, 1089
BspMAI	CTGCAG	2 cut(s)	64, 865
BspMI	ACCTGC	1 cut(s)	67
BspPI	GGATC	4 cut(s)	134, 147, 535, 674
BspQI	GCTCTTC	2 cut(s)	78, 187
BspT107I	GGYRCC	1 cut(s)	55
BsrDI	GCAATG	3 cut(s)	6, 451, 984
BsrFI	RCCGGY	1 cut(s)	116
BsrI	ACTGG	5 cut(s)	273, 364, 508, 550, 593
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	4 cut(s)	710, 711, 732, 947
BssMI	GATC	3 cut(s)	139, 527, 666
BssT1I	CCWWGG	1 cut(s)	732
Bst2UI	CCWGG	2 cut(s)	712, 890
Bst4CI	ACNGT	1 cut(s)	704
Bst6I	CTCTTC	2 cut(s)	78, 187
BstC8I	GCNNGC	3 cut(s)	346, 874, 886
BstDEI	CTNAG	7 cut(s)	413, 470, 745, 777, 796, 915, 957
BstF5I	GGATG	2 cut(s)	136, 721
BstFNI	CGCG	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	3 cut(s)	142, 530, 669
BstMBI	GATC	3 cut(s)	139, 527, 666
BstMWI	GCNNNNNNNGC	8 cut(s)	68, 860, 863, 869, 878, 928, 1022, 1031
BstNI	CCWGG	2 cut(s)	712, 890
BstNSI	RCATGY	1 cut(s)	876
BstSCI	CCNGG	2 cut(s)	710, 888
BstSFI	CTRYAG	2 cut(s)	60, 861
BstSLI	GKGCMC	1 cut(s)	58
BstUI	CGCG	1 cut(s)	239
BstV1I	GCAGC	6 cut(s)	528, 847, 869, 875, 893, 931
BstX2I	RGATCY	2 cut(s)	139, 527
BstXI	CCANNNNNNTGG	1 cut(s)	663
BstYI	RGATCY	2 cut(s)	139, 527
BsuRI	GGCC	2 cut(s)	459, 952
BtsCI	GGATG	2 cut(s)	136, 721
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	3 cut(s)	357, 543, 573
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	3 cut(s)	346, 874, 886
CfoI	GCGC	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	434
CseI	GACGC	1 cut(s)	902
Csp6I	GTAC	4 cut(s)	30, 193, 553, 653
CspAI	ACCGGT	1 cut(s)	116
CviAII	CATG	6 cut(s)	156, 323, 388, 873, 877, 1031
CviQI	GTAC	4 cut(s)	30, 193, 553, 653
DdeI	CTNAG	7 cut(s)	413, 470, 745, 777, 796, 915, 957
DpnI	GATC	3 cut(s)	141, 529, 668
DpnII	GATC	3 cut(s)	139, 527, 666
Eam1104I	CTCTTC	2 cut(s)	78, 187
EarI	CTCTTC	2 cut(s)	78, 187
Eco130I	CCWWGG	1 cut(s)	732
Eco47I	GGWCC	1 cut(s)	434
Eco88I	CYCGRG	1 cut(s)	946
EcoO109I	RGGNCCY	1 cut(s)	434
EcoRII	CCWGG	2 cut(s)	710, 888
EcoT14I	CCWWGG	1 cut(s)	732
EcoT22I	ATGCAT	1 cut(s)	878
ErhI	CCWWGG	1 cut(s)	732
FaeI	CATG	6 cut(s)	159, 326, 391, 876, 880, 1034
FaqI	GGGAC	4 cut(s)	76, 617, 755, 927
FatI	CATG	6 cut(s)	155, 322, 387, 872, 876, 1030
FauI	CCCGC	1 cut(s)	893
FauNDI	CATATG	1 cut(s)	307
Fnu4HI	GCNGC	9 cut(s)	237, 418, 517, 855, 858, 861, 864, 882, 920
FokI	GGATG	2 cut(s)	143, 728
Fsp4HI	GCNGC	9 cut(s)	237, 418, 517, 855, 858, 861, 864, 882, 920
FspBI	CTAG	2 cut(s)	212, 965
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	9 cut(s)	237, 418, 517, 855, 858, 861, 864, 882, 920
GsuI	CTGGAG	2 cut(s)	525, 753
HaeIII	GGCC	2 cut(s)	459, 952
HapII	CCGG	2 cut(s)	117, 1082
HgaI	GACGC	1 cut(s)	902
HhaI	GCGC	1 cut(s)	241
Hin1II	CATG	6 cut(s)	159, 326, 391, 876, 880, 1034
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HinfI	GANTC	3 cut(s)	152, 409, 743
HpaII	CCGG	2 cut(s)	117, 1082
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	2 cut(s)	299, 707
Hpy188I	TCNGA	3 cut(s)	252, 385, 748
Hpy188III	TCNNGA	5 cut(s)	77, 212, 432, 725, 798
Hpy8I	GTNNAC	2 cut(s)	299, 707
HpyAV	CCTTC	1 cut(s)	972
HpyCH4III	ACNGT	1 cut(s)	704
HpyF10VI	GCNNNNNNNGC	8 cut(s)	68, 860, 863, 869, 878, 928, 1022, 1031
HpyF3I	CTNAG	7 cut(s)	413, 470, 745, 777, 796, 915, 957
Hsp92II	CATG	6 cut(s)	159, 326, 391, 876, 880, 1034
HspAI	GCGC	1 cut(s)	239
Kzo9I	GATC	3 cut(s)	139, 527, 666
LguI	GCTCTTC	2 cut(s)	78, 187
Lsp1109I	GCAGC	6 cut(s)	528, 847, 869, 875, 893, 931
LweI	GCATC	2 cut(s)	587, 855
MaeI	CTAG	2 cut(s)	212, 965
MaeIII	GTNAC	3 cut(s)	64, 312, 829
MalI	GATC	3 cut(s)	141, 529, 668
MboI	GATC	3 cut(s)	139, 527, 666
MboII	GAAGA	4 cut(s)	65, 174, 1055, 1069
MfeI	CAATTG	1 cut(s)	476
MflI	RGATCY	2 cut(s)	139, 527
MhlI	GDGCHC	1 cut(s)	58
MlyI	GAGTC	1 cut(s)	737
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	8 cut(s)	227, 330, 732, 777, 934, 942, 954, 1078
Mph1103I	ATGCAT	1 cut(s)	878
MseI	TTAA	5 cut(s)	47, 96, 453, 789, 1105
MspA1I	CMGCKG	2 cut(s)	112, 860
MspI	CCGG	2 cut(s)	117, 1082
MspR9I	CCNGG	2 cut(s)	712, 890
MunI	CAATTG	1 cut(s)	476
MvaI	CCWGG	2 cut(s)	712, 890
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	8 cut(s)	68, 860, 863, 869, 878, 928, 1022, 1031
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	3 cut(s)	139, 527, 666
NlaIII	CATG	6 cut(s)	159, 326, 391, 876, 880, 1034
NlaIV	GGNNCC	4 cut(s)	57, 141, 436, 1089
NmeAIII	GCCGAG	1 cut(s)	907
NmuCI	GTSAC	2 cut(s)	64, 829
NsiI	ATGCAT	1 cut(s)	878
NspI	RCATGY	1 cut(s)	876
PaeI	GCATGC	1 cut(s)	876
PaqCI	CACCTGC	1 cut(s)	67
PasI	CCCWGGG	1 cut(s)	711
PciSI	GCTCTTC	2 cut(s)	78, 187
PfeI	GAWTC	2 cut(s)	152, 409
PinAI	ACCGGT	1 cut(s)	116
PkrI	GCNGC	9 cut(s)	238, 419, 518, 856, 859, 862, 865, 883, 921
PleI	GAGTC	1 cut(s)	737
PpsI	GAGTC	1 cut(s)	737
PpuMI	RGGWCCY	1 cut(s)	434
PsiI	TTATAA	1 cut(s)	492
Psp5II	RGGWCCY	1 cut(s)	434
Psp6I	CCWGG	2 cut(s)	710, 888
PspGI	CCWGG	2 cut(s)	710, 888
PspN4I	GGNNCC	4 cut(s)	57, 141, 436, 1089
PspPI	GGNCC	1 cut(s)	434
PspPPI	RGGWCCY	1 cut(s)	434
PstI	CTGCAG	2 cut(s)	64, 865
PsuI	RGATCY	2 cut(s)	139, 527
PvuII	CAGCTG	2 cut(s)	112, 860
RsaI	GTAC	4 cut(s)	31, 194, 554, 654
RsaNI	GTAC	4 cut(s)	30, 193, 553, 653
SapI	GCTCTTC	2 cut(s)	78, 187
SaqAI	TTAA	5 cut(s)	47, 96, 453, 789, 1105
SatI	GCNGC	9 cut(s)	237, 418, 517, 855, 858, 861, 864, 882, 920
Sau3AI	GATC	3 cut(s)	139, 527, 666
Sau96I	GGNCC	1 cut(s)	434
SchI	GAGTC	1 cut(s)	737
ScrFI	CCNGG	2 cut(s)	712, 890
SduI	GDGCHC	1 cut(s)	58
SfaNI	GCATC	2 cut(s)	587, 855
SfcI	CTRYAG	2 cut(s)	60, 861
SinI	GGWCC	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SphI	GCATGC	1 cut(s)	876
SsiI	CCGC	4 cut(s)	237, 418, 854, 886
SspI	AATATT	1 cut(s)	825
SspMI	CTAG	2 cut(s)	212, 965
StyD4I	CCNGG	2 cut(s)	710, 888
StyI	CCWWGG	1 cut(s)	732
TaaI	ACNGT	1 cut(s)	704
TaqI	TCGA	1 cut(s)	972
TatI	WGTACW	1 cut(s)	552
TauI	GCSGC	3 cut(s)	239, 420, 857
TfiI	GAWTC	2 cut(s)	152, 409
Tru1I	TTAA	5 cut(s)	47, 96, 453, 789, 1105
Tru9I	TTAA	5 cut(s)	47, 96, 453, 789, 1105
TscAI	CASTG	3 cut(s)	364, 550, 580
TseFI	GTSAC	2 cut(s)	64, 829
TseI	GCWGC	6 cut(s)	516, 857, 860, 863, 881, 919
Tsp45I	GTSAC	2 cut(s)	64, 829
TspDTI	ATGAA	5 cut(s)	165, 404, 620, 918, 973
TspGWI	ACGGA	1 cut(s)	640
TspRI	CASTG	3 cut(s)	364, 550, 580
VpaK11BI	GGWCC	1 cut(s)	434
XapI	RAATTY	2 cut(s)	353, 658
XbaI	TCTAGA	1 cut(s)	211
XceI	RCATGY	1 cut(s)	876
XcmI	CCANNNNNNNNNTGG	2 cut(s)	620, 874
XspI	CTAG	2 cut(s)	212, 965
Zsp2I	ATGCAT	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.