Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0016635

Physical Location & Seq

Genomic Coordinates Reverse (-)

73639773 .. 73642299

Gene Structure 2527 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0619000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGGGCTGACGTTCACGAAGCTCTTCAGCCGGCTTTTCGCCAAGAAAGAGATGCGAATTCTGATGGTTGGTCTCGACGCCGCCGGTAAGACCACCATCTTGTACAAGCTCAAGCTCGGAGAAATCGTCACCACCATCCCTACCATCGGATTTAATGTGGAGACTGTGGAATACAAGAACATCAGCTTCACTGTGTGGGATGTAGGGGGTCAGGACAAGATCCGTCCATTGTGGAGGCACTACTTCCAGAACACTCAAGGTCTTATTTTTGTGGTTGATAGCAATGACAGGGATCGAGTTGTTGAGGCGAGGGATGAGTTGCACAGGATGTTGAATGAGGATGAACTGAGGGATGCTGTTTTGCTTGTATTTGCCAACAAACAAGATCTTCCTAATGCAATGAATGCTGCAGAAATAACTGATAAGCTTGGTCTTCATTCTCTCCGCCAACGTCACTGGTACATTCAGAGCACATGTGCAACCTCTGGTGAGGGACTGTACGAGGGATTGGAATGGCTTTCCAACAACATTGCTAGCAAGGCAACTGAGAAGTGGTCATTTAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0006073 GO:0006091 GO:0006112 GO:0006629 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008466 GO:0008610 GO:0009058 GO:0009059 GO:0009250 GO:0009987 GO:0012505 GO:0015020 GO:0015980 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0030148 GO:0030246 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034641 GO:0034645 GO:0035251 GO:0036094 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044262 GO:0044264 GO:0044271 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046513 GO:0046527 GO:0048029 GO:0055114 GO:0071704 GO:0097708 GO:0098791 GO:1901564 GO:1901566 GO:1901576 GO:1990482

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

189

Amino Acids

21.7

Weight (kDa)

6.92

Isoelectric Point (pI)

30.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	5 - 177	1.7e-81	ADP-ribosylation factor family
SRPRB	PF09439	16 - 143	5.4e-13	Signal recognition particle receptor beta subunit
Roc	PF08477	19 - 129	9.3e-14	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	19 - 176	4.5e-12	Ras family
Gtr1_RagA	PF04670	19 - 141	1.8e-09	Gtr1/RagA G protein conserved region
G-alpha	PF00503	45 - 111	8.4e-10	G-protein alpha subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016635)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18480
fragaria_vesca	FvH4_6g01530
malus_domestica	MD04G1232600.v1.1 MD12G1250100.v1.1
prunus_persica	Prupe.6G352300_v2.0.a1
pyrus_communis	pycom04g20590 pycom12g23030
rosa_chinensis	RchiOBHm_Chr3g0449231
rosa_laevigata	RLG00000025844
rosa_multiflora	Rmu_sc0004874.1_g000006
rosa_roxburghii	Rroxscaffold_6G00427270
rosa_rugosa	Rorug02G0619000
rosa_samantha	Rh3CG016300
rosa_wichuraiana	Rw3G001310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	81, 445
AclWI	GGATC	2 cut(s)	214, 300
AcsI	RAATTY	2 cut(s)	57, 564
AcuI	CTGAAG	1 cut(s)	10
AcyI	GRCGYC	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	195
AfaI	GTAC	3 cut(s)	104, 461, 500
AfiI	CCNNNNNNNGG	1 cut(s)	146
AflIII	ACRYGT	1 cut(s)	473
AgsI	TTSAA	1 cut(s)	334
AluBI	AGCT	5 cut(s)	22, 109, 115, 186, 427
AluI	AGCT	5 cut(s)	22, 109, 115, 186, 427
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	2 cut(s)	77, 155
AlwI	GGATC	2 cut(s)	214, 300
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	2 cut(s)	57, 564
Asp700I	GAANNNNTTC	1 cut(s)	23
AsuHPI	GGTGA	2 cut(s)	121, 500
AsuNHI	GCTAGC	1 cut(s)	533
BbsI	GAAGAC	1 cut(s)	425
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	4 cut(s)	58, 104, 143, 152
BcoDI	GTCTC	2 cut(s)	77, 155
BfaI	CTAG	1 cut(s)	534
BfmI	CTRYAG	1 cut(s)	408
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	2 cut(s)	81, 408
BlsI	GCNGC	2 cut(s)	82, 409
BmsI	GCATC	2 cut(s)	42, 343
BmtI	GCTAGC	1 cut(s)	537
BpiI	GAAGAC	1 cut(s)	425
BpuEI	CTTGAG	2 cut(s)	95, 240
BsaHI	GRCGYC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse118I	RCCGGY	2 cut(s)	30, 83
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	3 cut(s)	289, 405, 528
BseGI	GGATG	6 cut(s)	135, 205, 319, 333, 346, 358
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	3 cut(s)	289, 405, 528
BseMII	CTCAG	2 cut(s)	338, 537
BseNI	ACTGG	1 cut(s)	461
BseXI	GCAGC	1 cut(s)	394
BsiHKAI	GWGCWC	1 cut(s)	473
BsiSI	CCGG	2 cut(s)	31, 84
BslFI	GGGAC	1 cut(s)	507
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	2 cut(s)	77, 155
BsmFI	GGGAC	1 cut(s)	507
BsmI	GAATGC	1 cut(s)	409
Bso31I	GGTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp1407I	TGTACA	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	219, 292, 385
BspACI	CCGC	2 cut(s)	81, 445
BspCNI	CTCAG	2 cut(s)	339, 538
BspMAI	CTGCAG	1 cut(s)	412
BspOI	GCTAGC	1 cut(s)	537
BspPI	GGATC	2 cut(s)	214, 300
BspQI	GCTCTTC	1 cut(s)	29
BspTNI	GGTCTC	1 cut(s)	77
BsrDI	GCAATG	3 cut(s)	289, 405, 528
BsrFI	RCCGGY	2 cut(s)	30, 83
BsrGI	TGTACA	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	461
BssAI	RCCGGY	2 cut(s)	30, 83
BssMI	GATC	3 cut(s)	219, 292, 385
BssNI	GRCGYC	1 cut(s)	78
Bst4CI	ACNGT	3 cut(s)	166, 193, 498
Bst6I	CTCTTC	1 cut(s)	29
BstACI	GRCGYC	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstAUI	TGTACA	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	32, 535
BstDEI	CTNAG	2 cut(s)	347, 546
BstF5I	GGATG	6 cut(s)	135, 205, 319, 333, 346, 358
BstKTI	GATC	3 cut(s)	222, 295, 388
BstMAI	GTCTC	2 cut(s)	77, 155
BstMBI	GATC	3 cut(s)	219, 292, 385
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 539
BstNSI	RCATGY	1 cut(s)	477
BstSFI	CTRYAG	1 cut(s)	408
BstV1I	GCAGC	1 cut(s)	394
BstV2I	GAAGAC	1 cut(s)	425
BstX2I	RGATCY	2 cut(s)	219, 385
BstYI	RGATCY	2 cut(s)	219, 385
BtsCI	GGATG	6 cut(s)	135, 205, 319, 333, 346, 358
BtsIMutI	CAGTG	2 cut(s)	189, 454
Cac8I	GCNNGC	2 cut(s)	32, 535
Cfr10I	RCCGGY	2 cut(s)	30, 83
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	3 cut(s)	103, 460, 499
CviAII	CATG	1 cut(s)	474
CviJI	RGCY	9 cut(s)	7, 22, 30, 34, 109, 115, 186, 427, 517
CviKI_1	RGCY	9 cut(s)	7, 22, 30, 34, 109, 115, 186, 427, 517
CviQI	GTAC	3 cut(s)	103, 460, 499
DdeI	CTNAG	2 cut(s)	347, 546
DpnI	GATC	3 cut(s)	221, 294, 387
DpnII	GATC	3 cut(s)	219, 292, 385
DraI	TTTAAA	1 cut(s)	562
DraIII	CACNNNGTG	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
EciI	GGCGGA	1 cut(s)	434
Eco31I	GGTCTC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	57
FaeI	CATG	1 cut(s)	477
FaiI	YATR	1 cut(s)	475
FaqI	GGGAC	1 cut(s)	507
FatI	CATG	1 cut(s)	473
Fnu4HI	GCNGC	2 cut(s)	81, 408
FokI	GGATG	6 cut(s)	122, 212, 326, 340, 353, 365
Fsp4HI	GCNGC	2 cut(s)	81, 408
FspBI	CTAG	1 cut(s)	534
GluI	GCNGC	2 cut(s)	81, 408
HapII	CCGG	2 cut(s)	31, 84
HgaI	GACGC	1 cut(s)	86
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	477
HindIII	AAGCTT	1 cut(s)	425
HpaII	CCGG	2 cut(s)	31, 84
HphI	GGTGA	2 cut(s)	121, 500
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	4 cut(s)	63, 119, 149, 468
Hpy188III	TCNNGA	4 cut(s)	16, 74, 212, 247
Hpy8I	GTNNAC	1 cut(s)	15
Hpy99I	CGWCG	1 cut(s)	80
HpyCH4III	ACNGT	3 cut(s)	166, 193, 498
HpyCH4IV	ACGT	2 cut(s)	11, 451
HpyCH4V	TGCA	4 cut(s)	322, 398, 410, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 539
HpyF3I	CTNAG	2 cut(s)	347, 546
HpySE526I	ACGT	2 cut(s)	11, 451
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	477
KroI	GCCGGC	1 cut(s)	30
KroNI	GCCGGC	1 cut(s)	32
Kzo9I	GATC	3 cut(s)	219, 292, 385
LguI	GCTCTTC	1 cut(s)	29
LpnPI	CCDG	8 cut(s)	44, 97, 197, 260, 274, 310, 442, 471
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	2 cut(s)	42, 343
MaeI	CTAG	1 cut(s)	534
MaeII	ACGT	2 cut(s)	11, 451
MaeIII	GTNAC	2 cut(s)	127, 452
MalI	GATC	3 cut(s)	221, 294, 387
MboI	GATC	3 cut(s)	219, 292, 385
MboII	GAAGA	3 cut(s)	16, 380, 425
MflI	RGATCY	2 cut(s)	219, 385
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	2 cut(s)	57, 564
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	8 cut(s)	228, 298, 303, 331, 342, 484, 493, 496
MroNI	GCCGGC	1 cut(s)	30
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	2 cut(s)	153, 561
MspI	CCGG	2 cut(s)	31, 84
Mva1269I	GAATGC	1 cut(s)	409
MwoI	GCNNNNNNNGC	2 cut(s)	404, 539
NaeI	GCCGGC	1 cut(s)	32
NdeII	GATC	3 cut(s)	219, 292, 385
NgoMIV	GCCGGC	1 cut(s)	30
NheI	GCTAGC	1 cut(s)	533
NlaIII	CATG	1 cut(s)	477
NmuCI	GTSAC	2 cut(s)	127, 452
NspI	RCATGY	1 cut(s)	477
PciI	ACATGT	1 cut(s)	473
PciSI	GCTCTTC	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PctI	GAATGC	1 cut(s)	409
PdiI	GCCGGC	1 cut(s)	32
PdmI	GAANNNNTTC	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	82, 409
PscI	ACATGT	1 cut(s)	473
PstI	CTGCAG	1 cut(s)	412
PsuI	RGATCY	2 cut(s)	219, 385
RsaI	GTAC	3 cut(s)	104, 461, 500
RsaNI	GTAC	3 cut(s)	103, 460, 499
SapI	GCTCTTC	1 cut(s)	29
SaqAI	TTAA	2 cut(s)	153, 561
SatI	GCNGC	2 cut(s)	81, 408
Sau3AI	GATC	3 cut(s)	219, 292, 385
SduI	GDGCHC	1 cut(s)	473
SetI	ASST	9 cut(s)	14, 24, 111, 117, 188, 262, 429, 454, 485
SfaNI	GCATC	2 cut(s)	42, 343
SfcI	CTRYAG	1 cut(s)	408
SmlI	CTYRAG	2 cut(s)	110, 255
SmoI	CTYRAG	2 cut(s)	110, 255
Sse9I	AATT	2 cut(s)	57, 564
SsiI	CCGC	2 cut(s)	81, 445
SspMI	CTAG	1 cut(s)	534
TaaI	ACNGT	3 cut(s)	166, 193, 498
TaiI	ACGT	2 cut(s)	14, 454
TaqI	TCGA	2 cut(s)	75, 295
TasI	AATT	2 cut(s)	57, 564
TatI	WGTACW	1 cut(s)	102
TauI	GCSGC	1 cut(s)	83
Tru1I	TTAA	2 cut(s)	153, 561
Tru9I	TTAA	2 cut(s)	153, 561
TscAI	CASTG	2 cut(s)	196, 461
TseFI	GTSAC	2 cut(s)	127, 452
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	2 cut(s)	127, 452
TspDTI	ATGAA	3 cut(s)	357, 416, 425
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	2 cut(s)	196, 461
XapI	RAATTY	2 cut(s)	57, 564
XceI	RCATGY	1 cut(s)	477
XmnI	GAANNNNTTC	1 cut(s)	23
XspI	CTAG	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.