Rh3CG016300

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Reverse (-)
1096569 .. 1101440
4872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG016300.1

Sequence Viewer

Length: 1413 bp
ATGACCACTGGATTCATTGATTTTTTTGATTTGCAGGCTGATGGATGGATAGTGGAGAAGATTAGTCTATTGGCGAATCCTAATCAAGTGAGGCCGACGAGATTCTGGGGTGTCTACACAAAGCTGAAGATTTTCAACATGACTAACTACAAGAAAGTTGTGTATCTTGATGCGGATACTATTGTGGTGAAAAGTGTTGAGGATCTTTTCAAATGCAGCAAGTTCTGTGCTAACTTGAAGCATTCTGAGAGGCTGAACTCTGGAGTGATGGTGGTGGAACCATCTGAACATGTATTTCAGGACATGATGGGGAAAGTGACCACTTTGGAATCTTACACTGGAGGAGATCAGGGGTTTCTGAATTCCTATTACTCGGATTTTCCCAATGCGCATGTTTTCGAACCAAACTTAGCACCAGAGGTTCGCAAGTCTAGGCCAGTTCCAGAAATGGAGCGACTTTCGACATTATATAATGCAGATGTTGGTCTCTATATGCTGGCAAACAAGTGGATGGTTAATGAAAGTGAACTCCGTGTCATTCACTATACCCTCGGTCCCCTCAAACCTTGGGATTGGTGGACATCTTGGCTTTTGAAACCCGTTGATGTCTGGCAGAATGTTAGGGAAGGGCTTAAGGACTCCCTTCCGGGAACTGGAGGAGGCAGAAATCCAAATGATGCTCTTGTTGTCAAAATTCTTTTCTCAGTTCCAATTTTGGCTCTACTCTTTTGTTACTATCGATCTTTTCTTCAGACACGGGAATACTTTGGATCCTTATGTCGAAGTTCATTTTATGACCAAATCAAACACGTATATTACAAAATTAGATCCACTGGGACTCTTAACTACACGAGTGTTTCTACGTCATCCACCATTAATGCCAGCAATCAGAGCAAGGTTCCTTGTTACTTGGGCGGAATGTCTATTGTTGCCTGTTTCATGGCTGCTGTGGTGGCCCTTGTGGTTGCTCTTGCAGTTGTACCTCGACAAGTTATGCCATGGACTGGTTTACTATTGATGTATGAGTGGACATTTACAATCTTCTTCTTATTGTTTGGAGGATATCTCCATCTAGTTTATCAATGGGGGAGGACAACAGCAATGCAATCAACACTTTCCTCTGGTCCTGGATCAGTTGATGATGATTCTGGAAAAGGTCATCAACGGCAAGTATCATTGTGTGATAGTGCTTCATTGTATTATGGGCTAGGAATGGCTTTTCTGGCTGTTGCTGCTCCATCTTTGCCATGTCTTTTTGGTATCACTGCTCTATTTTTAAGGTTAGGTTTAATGGTTGTTGGAGGCCTAATCTTGGCATCTTTCATGACATATGCGTCGGAGCACCTTGCAACTAGATCATTCTTGAGAGGCCTTGAAGACCGAGATGCTACGAGAAGTAGGAGCTTTTGTTAG

Protein Analysis

470

Amino Acids

52.82

Weight (kDa)

8.43

Isoelectric Point (pI)

34.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 38 - 193 3e-08 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016635)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18480
fragaria_vesca FvH4_6g01530
malus_domestica MD04G1232600.v1.1 MD12G1250100.v1.1
prunus_persica Prupe.6G352300_v2.0.a1
pyrus_communis pycom04g20590 pycom12g23030
rosa_chinensis RchiOBHm_Chr3g0449231
rosa_laevigata RLG00000025844
rosa_multiflora Rmu_sc0004874.1_g000006
rosa_roxburghii Rroxscaffold_6G00427270
rosa_rugosa Rorug02G0619000
rosa_samantha Rh3CG016300
rosa_wichuraiana Rw3G001310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1333
Acc16I TGCGCA 1 cut(s) 390
AccB7I CCANNNNNTGG 1 cut(s) 1004
AccI GTMKAC 1 cut(s) 114
AciI CCGC 2 cut(s) 173, 915
AclWI GGATC 5 cut(s) 210, 765, 778, 822, 1138
AcsI RAATTY 2 cut(s) 361, 693
AcuI CTGAAG 2 cut(s) 146, 734
AfaI GTAC 1 cut(s) 981
AfiI CCNNNNNNNGG 3 cut(s) 653, 1004, 1312
AflII CTTAAG 1 cut(s) 632
AflIII ACRYGT 2 cut(s) 289, 808
AgsI TTSAA 5 cut(s) 136, 211, 238, 595, 1376
AjnI CCWGG 1 cut(s) 1126
AluBI AGCT 2 cut(s) 124, 1404
AluI AGCT 2 cut(s) 124, 1404
Alw21I GWGCWC 1 cut(s) 1344
Alw26I GTCTC 1 cut(s) 491
AlwI GGATC 5 cut(s) 210, 765, 778, 822, 1138
AoxI GGCC 5 cut(s) 92, 434, 954, 1303, 1369
ApeKI GCWGC 3 cut(s) 216, 944, 1232
ApoI RAATTY 2 cut(s) 361, 693
AseI ATTAAT 1 cut(s) 876
Asp700I GAANNNNTTC 1 cut(s) 131
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 3 cut(s) 554, 955, 1124
AsuC2I CCSGG 1 cut(s) 648
AsuHPI GGTGA 1 cut(s) 199
AsuII TTCGAA 1 cut(s) 399
AvaII GGWCC 2 cut(s) 554, 1124
BaeI ACNNNNGTAYC 2 cut(s) 168, 201
BamHI GGATCC 1 cut(s) 770
BauI CACGAG 1 cut(s) 850
BbsI GAAGAC 1 cut(s) 1383
Bbv12I GWGCWC 1 cut(s) 1344
BbvI GCAGC 3 cut(s) 228, 931, 1219
BccI CCATC 8 cut(s) 35, 39, 262, 289, 301, 505, 1077, 1246
BceAI ACGGC 1 cut(s) 1181
BciT130I CCWGG 1 cut(s) 1128
BciVI GTATCC 1 cut(s) 169
BcnI CCSGG 1 cut(s) 648
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 4 cut(s) 432, 1073, 1208, 1353
BfrI CTTAAG 1 cut(s) 632
BfuI GTATCC 1 cut(s) 169
BisI GCNGC 3 cut(s) 217, 945, 1233
BlsI GCNGC 3 cut(s) 218, 946, 1234
Bme1390I CCNGG 2 cut(s) 648, 1128
Bme18I GGWCC 2 cut(s) 554, 1124
BmgT120I GGNCC 3 cut(s) 554, 955, 1124
BmiI GGNNCC 4 cut(s) 279, 556, 772, 900
BmrFI CCNGG 2 cut(s) 648, 1128
BmrI ACTGGG 1 cut(s) 843
BmsI GCATC 4 cut(s) 160, 667, 1325, 1375
BmuI ACTGGG 1 cut(s) 843
BpiI GAAGAC 1 cut(s) 1383
BplI GAGNNNNNCTC 2 cut(s) 1050, 1082
BpmI CTGGAG 3 cut(s) 282, 360, 675
Bpu14I TTCGAA 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 1384
BpuMI CCSGG 1 cut(s) 648
Bsa29I ATCGAT 1 cut(s) 739
BsaAI YACGTR 1 cut(s) 811
BsaI GGTCTC 1 cut(s) 491
BsaJI CCNNGG 3 cut(s) 550, 566, 998
BsaXI ACNNNNNCTCC 3 cut(s) 255, 285, 1393
Bsc4I CCNNNNNNNGG 3 cut(s) 653, 1004, 1312
Bse1I ACTGG 6 cut(s) 13, 343, 437, 658, 838, 1009
Bse3DI GCAATG 1 cut(s) 1107
BseBI CCWGG 1 cut(s) 1128
BseCI ATCGAT 1 cut(s) 739
BseDI CCNNGG 3 cut(s) 550, 566, 998
BseGI GGATG 3 cut(s) 50, 516, 866
BseLI CCNNNNNNNGG 3 cut(s) 653, 1004, 1312
BseMI GCAATG 1 cut(s) 1107
BseMII CTCAG 2 cut(s) 237, 717
BseNI ACTGG 6 cut(s) 13, 343, 437, 658, 838, 1009
BseRI GAGGAG 2 cut(s) 357, 672
BseXI GCAGC 3 cut(s) 228, 931, 1219
BshFI GGCC 5 cut(s) 94, 436, 956, 1305, 1371
BshVI ATCGAT 1 cut(s) 739
BsiHKAI GWGCWC 1 cut(s) 1344
BsiSI CCGG 1 cut(s) 647
BslFI GGGAC 2 cut(s) 540, 850
BslI CCNNNNNNNGG 3 cut(s) 653, 1004, 1312
BsmAI GTCTC 1 cut(s) 491
BsmFI GGGAC 2 cut(s) 540, 850
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 5 cut(s) 94, 436, 956, 1305, 1371
Bso31I GGTCTC 1 cut(s) 491
Bsp119I TTCGAA 1 cut(s) 399
Bsp1286I GDGCHC 1 cut(s) 1344
Bsp143I GATC 7 cut(s) 202, 346, 740, 770, 827, 1130, 1355
Bsp19I CCATGG 1 cut(s) 998
BspACI CCGC 2 cut(s) 173, 915
BspANI GGCC 5 cut(s) 94, 436, 956, 1305, 1371
BspCNI CTCAG 2 cut(s) 238, 716
BspDI ATCGAT 1 cut(s) 739
BspHI TCATGA 1 cut(s) 1323
BspLI GGNNCC 4 cut(s) 279, 556, 772, 900
BspPI GGATC 5 cut(s) 210, 765, 778, 822, 1138
BspT104I TTCGAA 1 cut(s) 399
BspTI CTTAAG 1 cut(s) 632
BspTNI GGTCTC 1 cut(s) 491
BsrDI GCAATG 1 cut(s) 1107
BsrI ACTGG 6 cut(s) 13, 343, 437, 658, 838, 1009
BssECI CCNNGG 3 cut(s) 550, 566, 998
BssMI GATC 7 cut(s) 202, 346, 740, 770, 827, 1130, 1355
BssSI CACGAG 1 cut(s) 850
BssT1I CCWWGG 2 cut(s) 566, 998
Bst2BI CACGAG 1 cut(s) 850
Bst2UI CCWGG 1 cut(s) 1128
BstAFI CTTAAG 1 cut(s) 632
BstBAI YACGTR 1 cut(s) 811
BstBI TTCGAA 1 cut(s) 399
BstC8I GCNNGC 3 cut(s) 36, 498, 883
BstDEI CTNAG 3 cut(s) 246, 409, 703
BstDSI CCRYGG 1 cut(s) 998
BstF5I GGATG 3 cut(s) 50, 516, 866
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 7 cut(s) 205, 349, 743, 773, 830, 1133, 1358
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 7 cut(s) 202, 346, 740, 770, 827, 1130, 1355
BstMWI GCNNNNNNNGC 4 cut(s) 891, 953, 1223, 1232
BstNI CCWGG 1 cut(s) 1128
BstNSI RCATGY 2 cut(s) 293, 395
BstSCI CCNGG 2 cut(s) 646, 1126
BstV1I GCAGC 3 cut(s) 228, 931, 1219
BstV2I GAAGAC 1 cut(s) 1383
BstX2I RGATCY 3 cut(s) 202, 770, 827
BstYI RGATCY 3 cut(s) 202, 770, 827
Bsu15I ATCGAT 1 cut(s) 739
BsuI GTATCC 1 cut(s) 169
BsuRI GGCC 5 cut(s) 94, 436, 956, 1305, 1371
BsuTUI ATCGAT 1 cut(s) 739
BtgI CCRYGG 1 cut(s) 998
BtsCI GGATG 3 cut(s) 50, 516, 866
BtsI GCAGTG 1 cut(s) 1263
BtsIMutI CAGTG 4 cut(s) 6, 336, 831, 1263
Cac8I GCNNGC 3 cut(s) 36, 498, 883
CciI TCATGA 1 cut(s) 1323
CfoI GCGC 1 cut(s) 391
Cfr13I GGNCC 3 cut(s) 554, 955, 1124
ClaI ATCGAT 1 cut(s) 739
CseI GACGC 1 cut(s) 1323
Csp6I GTAC 1 cut(s) 980
CviAII CATG 8 cut(s) 139, 290, 304, 392, 940, 999, 1248, 1324
CviQI GTAC 1 cut(s) 980
DdeI CTNAG 3 cut(s) 246, 409, 703
DpnI GATC 7 cut(s) 204, 348, 742, 772, 829, 1132, 1357
DpnII GATC 7 cut(s) 202, 346, 740, 770, 827, 1130, 1355
DrdI GACNNNNNNGTC 1 cut(s) 1333
DseDI GACNNNNNNGTC 1 cut(s) 1333
EciI GGCGGA 1 cut(s) 930
Eco130I CCWWGG 2 cut(s) 566, 998
Eco147I AGGCCT 2 cut(s) 1305, 1371
Eco31I GGTCTC 1 cut(s) 491
Eco32I GATATC 1 cut(s) 1064
Eco47I GGWCC 2 cut(s) 554, 1124
Eco57I CTGAAG 2 cut(s) 146, 734
EcoRI GAATTC 1 cut(s) 361
EcoRII CCWGG 1 cut(s) 1126
EcoRV GATATC 1 cut(s) 1064
EcoT14I CCWWGG 2 cut(s) 566, 998
ErhI CCWWGG 2 cut(s) 566, 998
FaeI CATG 8 cut(s) 142, 293, 307, 395, 943, 1002, 1251, 1327
FaqI GGGAC 2 cut(s) 540, 850
FatI CATG 8 cut(s) 138, 289, 303, 391, 939, 998, 1247, 1323
FauNDI CATATG 1 cut(s) 1330
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 3 cut(s) 217, 945, 1233
FokI GGATG 3 cut(s) 57, 523, 853
Fsp4HI GCNGC 3 cut(s) 217, 945, 1233
FspAI RTGCGCAY 1 cut(s) 390
FspBI CTAG 4 cut(s) 432, 1073, 1208, 1353
FspI TGCGCA 1 cut(s) 390
GlaI GCGC 1 cut(s) 390
GluI GCNGC 3 cut(s) 217, 945, 1233
GsuI CTGGAG 3 cut(s) 282, 360, 675
HaeIII GGCC 5 cut(s) 94, 436, 956, 1305, 1371
HapII CCGG 1 cut(s) 647
HgaI GACGC 1 cut(s) 1323
HhaI GCGC 1 cut(s) 391
Hin1II CATG 8 cut(s) 142, 293, 307, 395, 943, 1002, 1251, 1327
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HinfI GANTC 7 cut(s) 12, 76, 102, 329, 638, 838, 1145
HpaII CCGG 1 cut(s) 647
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 5 cut(s) 115, 527, 579, 1010, 1029
Hpy188I TCNGA 7 cut(s) 247, 286, 360, 376, 753, 891, 1339
Hpy188III TCNNGA 7 cut(s) 167, 261, 299, 443, 1149, 1324, 1363
Hpy8I GTNNAC 5 cut(s) 115, 527, 579, 1010, 1029
Hpy99I CGWCG 2 cut(s) 100, 1339
HpyAV CCTTC 2 cut(s) 620, 653
HpyCH4IV ACGT 2 cut(s) 810, 863
HpyCH4V TGCA 6 cut(s) 34, 216, 476, 974, 1105, 1349
HpyF10VI GCNNNNNNNGC 4 cut(s) 891, 953, 1223, 1232
HpyF3I CTNAG 3 cut(s) 246, 409, 703
HpySE526I ACGT 2 cut(s) 810, 863
Hsp92II CATG 8 cut(s) 142, 293, 307, 395, 943, 1002, 1251, 1327
HspAI GCGC 1 cut(s) 389
Kzo9I GATC 7 cut(s) 202, 346, 740, 770, 827, 1130, 1355
LmnI GCTCC 4 cut(s) 451, 1240, 1339, 1401
Lsp1109I GCAGC 3 cut(s) 228, 931, 1219
LweI GCATC 4 cut(s) 160, 667, 1325, 1375
MaeI CTAG 4 cut(s) 432, 1073, 1208, 1353
MaeII ACGT 2 cut(s) 810, 863
MaeIII GTNAC 3 cut(s) 316, 731, 905
MalI GATC 7 cut(s) 204, 348, 742, 772, 829, 1132, 1357
MboI GATC 7 cut(s) 202, 346, 740, 770, 827, 1130, 1355
MboII GAAGA 6 cut(s) 70, 139, 740, 1033, 1036, 1388
MflI RGATCY 3 cut(s) 202, 770, 827
MhlI GDGCHC 1 cut(s) 1344
MluCI AATT 4 cut(s) 361, 693, 711, 822
MlyI GAGTC 2 cut(s) 632, 832
MmeI TCCRAC 2 cut(s) 1279, 1317
MroXI GAANNNNTTC 1 cut(s) 131
MseI TTAA 6 cut(s) 516, 633, 843, 876, 1277, 1289
MspCI CTTAAG 1 cut(s) 632
MspI CCGG 1 cut(s) 647
MspR9I CCNGG 2 cut(s) 648, 1128
Mva1269I GAATGC 1 cut(s) 241
MvaI CCWGG 1 cut(s) 1128
MwoI GCNNNNNNNGC 4 cut(s) 891, 953, 1223, 1232
NciI CCSGG 1 cut(s) 648
NcoI CCATGG 1 cut(s) 998
NdeI CATATG 1 cut(s) 1330
NdeII GATC 7 cut(s) 202, 346, 740, 770, 827, 1130, 1355
NlaIII CATG 8 cut(s) 142, 293, 307, 395, 943, 1002, 1251, 1327
NlaIV GGNNCC 4 cut(s) 279, 556, 772, 900
NmuCI GTSAC 1 cut(s) 316
NsbI TGCGCA 1 cut(s) 390
NspI RCATGY 2 cut(s) 293, 395
NspV TTCGAA 1 cut(s) 399
PagI TCATGA 1 cut(s) 1323
PceI AGGCCT 2 cut(s) 1305, 1371
PciI ACATGT 1 cut(s) 289
PctI GAATGC 1 cut(s) 241
PdmI GAANNNNTTC 1 cut(s) 131
PfeI GAWTC 5 cut(s) 12, 76, 102, 329, 1145
PflMI CCANNNNNTGG 1 cut(s) 1004
PfoI TCCNGGA 2 cut(s) 646, 1126
PkrI GCNGC 3 cut(s) 218, 946, 1234
PleI GAGTC 2 cut(s) 632, 832
PpsI GAGTC 2 cut(s) 632, 832
Ppu21I YACGTR 1 cut(s) 811
PscI ACATGT 1 cut(s) 289
PshBI ATTAAT 1 cut(s) 876
Psp6I CCWGG 1 cut(s) 1126
PspGI CCWGG 1 cut(s) 1126
PspN4I GGNNCC 4 cut(s) 279, 556, 772, 900
PspPI GGNCC 3 cut(s) 554, 955, 1124
PsuI RGATCY 3 cut(s) 202, 770, 827
RsaI GTAC 1 cut(s) 981
RsaNI GTAC 1 cut(s) 980
SaqAI TTAA 6 cut(s) 516, 633, 843, 876, 1277, 1289
SatI GCNGC 3 cut(s) 217, 945, 1233
Sau3AI GATC 7 cut(s) 202, 346, 740, 770, 827, 1130, 1355
Sau96I GGNCC 3 cut(s) 554, 955, 1124
SchI GAGTC 2 cut(s) 632, 832
ScrFI CCNGG 2 cut(s) 648, 1128
SduI GDGCHC 1 cut(s) 1344
SfaNI GCATC 4 cut(s) 160, 667, 1325, 1375
SfuI TTCGAA 1 cut(s) 399
SinI GGWCC 2 cut(s) 554, 1124
SmlI CTYRAG 2 cut(s) 632, 1363
SmoI CTYRAG 2 cut(s) 632, 1363
Sse9I AATT 4 cut(s) 361, 693, 711, 822
SseBI AGGCCT 2 cut(s) 1305, 1371
SsiI CCGC 2 cut(s) 173, 915
SspMI CTAG 4 cut(s) 432, 1073, 1208, 1353
StuI AGGCCT 2 cut(s) 1305, 1371
StyD4I CCNGG 2 cut(s) 646, 1126
StyI CCWWGG 2 cut(s) 566, 998
TaiI ACGT 2 cut(s) 813, 866
TaqI TCGA 5 cut(s) 399, 461, 739, 781, 985
TaqII GACCGA 2 cut(s) 542, 1395
TasI AATT 4 cut(s) 361, 693, 711, 822
TfiI GAWTC 5 cut(s) 12, 76, 102, 329, 1145
Tru1I TTAA 6 cut(s) 516, 633, 843, 876, 1277, 1289
Tru9I TTAA 6 cut(s) 516, 633, 843, 876, 1277, 1289
TscAI CASTG 4 cut(s) 13, 343, 838, 1270
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 3 cut(s) 216, 944, 1232
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 6 cut(s) 4, 534, 777, 928, 1182, 1312
TspGWI ACGGA 1 cut(s) 521
TspRI CASTG 4 cut(s) 13, 343, 838, 1270
Van91I CCANNNNNTGG 1 cut(s) 1004
Vha464I CTTAAG 1 cut(s) 632
VpaK11BI GGWCC 2 cut(s) 554, 1124
VspI ATTAAT 1 cut(s) 876
XapI RAATTY 2 cut(s) 361, 693
XceI RCATGY 2 cut(s) 293, 395
XmiI GTMKAC 1 cut(s) 114
XmnI GAANNNNTTC 1 cut(s) 131
XspI CTAG 4 cut(s) 432, 1073, 1208, 1353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.