Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008383

Physical Location & Seq

Genomic Coordinates Reverse (-)

4248690 .. 4253677

Gene Structure 4988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0055200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTGGTTCAGAAGCGGTGCTTTAAAACACAACATCCTGTCTAAAAGAAAGTGTTTTACAGGGGTATCATTGACTCCAAAGGAATATGCAGATACTTCAAAGGGCCTTCAACGCGACAAAACTGCCAGTAACTACTGTCCTGAGTGTGGATTCAGTCTGTTGGAGTGTGCAATAAGAAACCAGCACACCCATATGATTGAGTTGTTGCTTAAGAATGGAGCTGAAATTTTTCGAGATAATGACATTGGAAGAGGCATTGAGACAATGGACGCCTTAGTTAAGCTTGGTTATAAAGAAGTTGAAGGCGAGTTTCTGTACACTTCAAGCTCTATGAGGAGATTCAACGTTTGGGCTACCTTTTCAGTCAAAAATCGTGGGATTGCTATATTTTATGGTGGCAAGAGTCGAATGAATGTCCACGGCAAGGAACCAGATGTGTATTTCGCATGGGGCAAGGCTACTTTCAAGCGGGAAGGATCTGTGTTACGGATCGAAGATGGATTGGAGACTTCCTTGCTGGAACCAGCAGAACCTCCATATTTGGGTAGCAAAGAGATATTTAACTGGTTTTGCAACCAGTTAAATGAGGCTATTGGTTTGGGTTCTGTGGTGGATGATGGCTTTGATCTCTTTGATATAGAGATGGCACTCAAAGCTTCACTGGACCATTTTGGACAGCCATCTTCACAGCGTTCAATGGCTGTTGGTTTGGGTTCTGTGGTGGATGATGGGTTAATTGGGTTTGATCTCTCTGATATAGAGATGGCACTCAAAGCTTCATATATTGGACCATTTTGGACAGCCATCTTTACAGCCTTCTGCACCACCTTTGCCCGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

280

Amino Acids

31.32

Weight (kDa)

6.01

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08870 AT3G08870 AT5G01540 AT5G01550 AT5G01560
fragaria_vesca	FvH4_6g10960
malus_domestica	MD04G1163200.v1.1 MD12G1176700.v1.1
prunus_persica	Prupe.6G282700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0462261
rosa_laevigata	RLG00000024873 RLG00000032509
rosa_multiflora	Rmu_sc0006188.1_g000002 Rmu_sc0020622.1_g000003
rosa_roxburghii	Rroxscaffold_6G00417640
rosa_rugosa	Rorug03G0055200 Rorug03G0055200 Rorug03G0055300
rosa_samantha	Rh3AG114000 Rh3BG117100 Rh3CG119900 Rh3DG118900
rosa_wichuraiana	Rw3G009620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	291
AccII	CGCG	1 cut(s)	114
AciI	CCGC	2 cut(s)	15, 469
AclI	AACGTT	1 cut(s)	345
AclWI	GGATC	2 cut(s)	484, 497
AcsI	RAATTY	1 cut(s)	225
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	3 cut(s)	146, 424, 542
AflII	CTTAAG	1 cut(s)	209
AgsI	TTSAA	7 cut(s)	99, 110, 302, 324, 343, 466, 696
AluBI	AGCT	5 cut(s)	221, 283, 327, 656, 776
AluI	AGCT	5 cut(s)	221, 283, 327, 656, 776
Alw26I	GTCTC	2 cut(s)	254, 500
AlwI	GGATC	2 cut(s)	484, 497
AoxI	GGCC	1 cut(s)	103
ApoI	RAATTY	1 cut(s)	225
Asp700I	GAANNNNTTC	1 cut(s)	228
AspS9I	GGNCC	3 cut(s)	103, 664, 788
AvaII	GGWCC	2 cut(s)	664, 788
BaeI	ACNNNNGTAYC	2 cut(s)	48, 81
BccI	CCATC	7 cut(s)	491, 611, 637, 688, 722, 757, 812
BceAI	ACGGC	1 cut(s)	436
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BcoDI	GTCTC	2 cut(s)	254, 500
BfrI	CTTAAG	1 cut(s)	209
Bme18I	GGWCC	2 cut(s)	664, 788
BmgT120I	GGNCC	3 cut(s)	103, 664, 788
BmiI	GGNNCC	2 cut(s)	429, 522
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	418
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 424, 542
Bse1I	ACTGG	4 cut(s)	126, 569, 577, 666
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	3 cut(s)	33, 619, 730
BseLI	CCNNNNNNNGG	3 cut(s)	146, 424, 542
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	4 cut(s)	126, 569, 577, 666
BseRI	GAGGAG	1 cut(s)	349
BsgI	GTGCAG	1 cut(s)	805
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	105
BslI	CCNNNNNNNGG	3 cut(s)	146, 424, 542
BsmAI	GTCTC	2 cut(s)	254, 500
BsnI	GGCC	1 cut(s)	105
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	4 cut(s)	476, 489, 625, 745
BspACI	CCGC	2 cut(s)	15, 469
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	429, 522
BspPI	GGATC	2 cut(s)	484, 497
BspTI	CTTAAG	1 cut(s)	209
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	4 cut(s)	126, 569, 577, 666
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	4 cut(s)	476, 489, 625, 745
BssNI	GRCGYC	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	244
BstACI	GRCGYC	1 cut(s)	270
BstAFI	CTTAAG	1 cut(s)	209
BstAUI	TGTACA	1 cut(s)	315
BstDEI	CTNAG	2 cut(s)	141, 274
BstDSI	CCRYGG	1 cut(s)	418
BstF5I	GGATG	3 cut(s)	33, 619, 730
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	4 cut(s)	479, 492, 628, 748
BstMAI	GTCTC	2 cut(s)	254, 500
BstMBI	GATC	4 cut(s)	476, 489, 625, 745
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 653, 773
BstUI	CGCG	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
BsuRI	GGCC	1 cut(s)	105
BtgI	CCRYGG	1 cut(s)	418
BtsCI	GGATG	3 cut(s)	33, 619, 730
BtsIMutI	CAGTG	1 cut(s)	659
Cfr13I	GGNCC	3 cut(s)	103, 664, 788
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	316
CspCI	CAANNNNNGTGG	2 cut(s)	355, 390
CviAII	CATG	1 cut(s)	447
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	2 cut(s)	141, 274
DpnI	GATC	4 cut(s)	478, 491, 627, 747
DpnII	GATC	4 cut(s)	476, 489, 625, 745
DraI	TTTAAA	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
Eco47I	GGWCC	2 cut(s)	664, 788
EcoO109I	RGGNCCY	1 cut(s)	103
FaeI	CATG	1 cut(s)	450
FalI	AAGNNNNNCTT	1 cut(s)	36
FatI	CATG	1 cut(s)	446
FauI	CCCGC	1 cut(s)	462
FauNDI	CATATG	1 cut(s)	192
FokI	GGATG	3 cut(s)	20, 626, 737
HaeIII	GGCC	1 cut(s)	105
HgaI	GACGC	1 cut(s)	278
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	1 cut(s)	450
HindIII	AAGCTT	3 cut(s)	281, 654, 774
HinfI	GANTC	4 cut(s)	73, 150, 339, 403
Hpy166II	GTNNAC	2 cut(s)	318, 418
Hpy188I	TCNGA	2 cut(s)	11, 754
Hpy188III	TCNNGA	2 cut(s)	140, 233
Hpy8I	GTNNAC	2 cut(s)	318, 418
HpyAV	CCTTC	4 cut(s)	116, 296, 467, 826
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	4 cut(s)	89, 170, 573, 822
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 653, 773
HpyF3I	CTNAG	2 cut(s)	141, 274
HpySE526I	ACGT	1 cut(s)	345
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	450
Kzo9I	GATC	4 cut(s)	476, 489, 625, 745
LmnI	GCTCC	1 cut(s)	218
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	2 cut(s)	128, 483
MalI	GATC	4 cut(s)	478, 491, 627, 747
MboI	GATC	4 cut(s)	476, 489, 625, 745
MboII	GAAGA	3 cut(s)	261, 506, 675
MflI	RGATCY	1 cut(s)	476
MluCI	AATT	2 cut(s)	225, 735
MlyI	GAGTC	2 cut(s)	67, 412
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	4 cut(s)	245, 327, 543, 580
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	6 cut(s)	23, 210, 279, 561, 581, 734
MslI	CAYNNNNRTG	1 cut(s)	191
MspCI	CTTAAG	1 cut(s)	209
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	3 cut(s)	111, 653, 773
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	4 cut(s)	476, 489, 625, 745
NlaIII	CATG	1 cut(s)	450
NlaIV	GGNNCC	2 cut(s)	429, 522
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	150, 339
PleI	GAGTC	2 cut(s)	67, 411
PpsI	GAGTC	2 cut(s)	67, 411
PsiI	TTATAA	1 cut(s)	291
Psp1406I	AACGTT	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	429, 522
PspPI	GGNCC	3 cut(s)	103, 664, 788
PsuI	RGATCY	1 cut(s)	476
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	191
SaqAI	TTAA	6 cut(s)	23, 210, 279, 561, 581, 734
Sau3AI	GATC	4 cut(s)	476, 489, 625, 745
Sau96I	GGNCC	3 cut(s)	103, 664, 788
SchI	GAGTC	2 cut(s)	67, 412
SetI	ASST	9 cut(s)	223, 285, 329, 348, 359, 535, 658, 778, 830
SinI	GGWCC	2 cut(s)	664, 788
SmiMI	CAYNNNNRTG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	2 cut(s)	225, 735
SsiI	CCGC	2 cut(s)	15, 469
TaaI	ACNGT	1 cut(s)	137
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	3 cut(s)	232, 406, 492
TasI	AATT	2 cut(s)	225, 735
TatI	WGTACW	1 cut(s)	315
TfiI	GAWTC	2 cut(s)	150, 339
Tru1I	TTAA	6 cut(s)	23, 210, 279, 561, 581, 734
Tru9I	TTAA	6 cut(s)	23, 210, 279, 561, 581, 734
TscAI	CASTG	1 cut(s)	666
TspDTI	ATGAA	2 cut(s)	425, 768
TspGWI	ACGGA	1 cut(s)	502
TspRI	CASTG	1 cut(s)	666
Vha464I	CTTAAG	1 cut(s)	209
VpaK11BI	GGWCC	2 cut(s)	664, 788
XapI	RAATTY	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.