Rorug03G0055300

Lectin-domain containing receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
4257982 .. 4259334
1353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0055300.1

Sequence Viewer

Length: 1353 bp
ATGTCTTCAGATCCAGATCATTTCTCATTGGAAGCTTTACTGAATCCCGTTGAAAGACAGGGGATCAAAGCGAGGTCCTCCCTTTTGAATGAGATTGGCAAGGAGTTCCAGCACTGTTTGGCAGTGAAATTGGTTCCTGGAAGGGGTTTTCGTCGCGATGAGTTCATCTCTACATTTATGAACCTCTGGAGGTTTGCAAAAGGTTTGGCAGTGAAATCAATGGATGACAATCTCTTCCTATTTCGTTTCCACTTTCTAGAAGATTTGACCTCTGTTCTACAAAAGGAACCGTGGTCTTATGCTGGAAATTTGTTATTGATGGAGCGGGTTGTCTCTTCCACTTCAATTATCAATGTCCAACTTTCTCATGTTTCACTCTGGGTTCATGTGCACAAACTACCGTGGCTCAAAATGACTGATCCGATGGCAAAGTTAATTGGAGACACCCTGGGAGTCTTCATTGATGTTGATCGGGACAAGGAGTTTGGATGTATTGGAGGAACAATGAAGATCCGAGTACGGTGGGATATTACTAGACCTCTTTGCCGGAAGACTGTAATTGAATTGGATGACACTGGGGATACAGAATTAGAATTCTCCTATGAACGGGTGCCAGGATTCTGTGCTTTTTGTGGCCTGCTAACTCACTGGACGGCAAATTGTCCATGGCGTAGATACCATCCTCCAAATAAGGAGGATTTTCTGTTCCAGGAGGATCTGAAGGCAAATCACCGTCAGACAATGGCTCGTCGTTTTCCAAAAAACATACCAGTAAGTGATTCAGTTAACCAACTGCATTCTCCATCAACTTCTGGTTTTGGAGACAACCCAACACCGGAAACAGTACCGGCAAAGGCAACGGCGGCGACCACGGGGACTAAAGTTGCAGCAAACCGTTTTTCATATTTGTTGAAGGATAGTTGTGCAGGCCCGGTCCATTTACAAAAGATGAAAGGCCCAAGCCCTAACTATGTTGATTTGCACTTTGACAGGCCCATGCCTATGTTTAATTCCGATTTGGTTGGGGACAACTCTTATCATACTCATCCGGAGGCGGTTGCTGAATCTAATCCAAGTCCTGCTGATTTTTCTGGGTTGGTTACTGTCCCCTTACATTGCCCAACTGACATTCCGCGTGTGAGTCCAAGAAAATCTCCTCCTACTACATTTTCCCAACCAACGGCTAAGCGAAAATTTGGAGATGGTGGCAAAGCAAAATCGGCAGTCCCGAGTACAGAGGAAGATCTGGTTCATTTTGTGCGTACCAGAAGGCGGGGGAAGCAGTTGAGTAGTTCTTCAAAGGAGAAATCTGATTCTCAGGTTGGGCATTCTTGCCCGCCTACCCTGTCATGA

Protein Analysis

450

Amino Acids

50.46

Weight (kDa)

8.75

Isoelectric Point (pI)

49.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 35 - 109 5e-10 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 175 - 222 1.4e-10 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 610
AccBSI CCGCTC 1 cut(s) 325
AccII CGCG 2 cut(s) 156, 1135
AccIII TCCGGA 1 cut(s) 1048
AciI CCGC 6 cut(s) 325, 863, 1055, 1133, 1273, 1337
AclWI GGATC 5 cut(s) 5, 71, 413, 505, 723
AcsI RAATTY 3 cut(s) 307, 593, 1193
AcuI CTGAAG 1 cut(s) 740
AfaI GTAC 4 cut(s) 519, 846, 1234, 1264
AfiI CCNNNNNNNGG 5 cut(s) 143, 606, 835, 1180, 1272
AgsI TTSAA 6 cut(s) 53, 88, 345, 563, 913, 1299
AjnI CCWGG 4 cut(s) 136, 447, 613, 708
AloI GAACNNNNNNTCC 2 cut(s) 689, 721
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 3 cut(s) 337, 435, 816
Alw44I GTGCAC 1 cut(s) 389
AlwI GGATC 5 cut(s) 5, 71, 413, 505, 723
Ama87I CYCGRG 1 cut(s) 1228
Aor13HI TCCGGA 1 cut(s) 1048
AoxI GGCC 4 cut(s) 634, 928, 955, 992
ApaLI GTGCAC 1 cut(s) 389
ApeKI GCWGC 1 cut(s) 887
ApoI RAATTY 3 cut(s) 307, 593, 1193
ArsI GACNNNNNNTTYG 2 cut(s) 467, 499
AspS9I GGNCC 5 cut(s) 75, 929, 934, 956, 993
AsuC2I CCSGG 1 cut(s) 932
AsuHPI GGTGA 1 cut(s) 722
AvaI CYCGRG 1 cut(s) 1228
AvaII GGWCC 2 cut(s) 75, 934
BaeGI GKGCMC 1 cut(s) 393
BanI GGYRCC 1 cut(s) 610
BbsI GAAGAC 2 cut(s) 448, 557
Bbv12I GWGCWC 1 cut(s) 393
BbvI GCAGC 1 cut(s) 899
BccI CCATC 5 cut(s) 313, 418, 687, 811, 1196
BceAI ACGGC 3 cut(s) 669, 876, 1197
BciT130I CCWGG 4 cut(s) 138, 449, 615, 710
BciVI GTATCC 1 cut(s) 574
BcnI CCSGG 1 cut(s) 932
BcoDI GTCTC 3 cut(s) 337, 435, 816
BfaI CTAG 2 cut(s) 257, 534
BfuI GTATCC 1 cut(s) 574
BglII AGATCT 1 cut(s) 1243
BisI GCNGC 2 cut(s) 864, 888
BlpI GCTNAGC 1 cut(s) 1185
BlsI GCNGC 2 cut(s) 865, 889
Bme1390I CCNGG 5 cut(s) 138, 449, 615, 710, 932
Bme18I GGWCC 2 cut(s) 75, 934
BmeT110I CYCGRG 1 cut(s) 1228
BmgT120I GGNCC 5 cut(s) 75, 929, 934, 956, 993
BmiI GGNNCC 3 cut(s) 135, 288, 612
BmrFI CCNGG 5 cut(s) 138, 449, 615, 710, 932
BmrI ACTGGG 1 cut(s) 585
BmuI ACTGGG 1 cut(s) 585
BpiI GAAGAC 2 cut(s) 448, 557
BplI GAGNNNNNCTC 2 cut(s) 152, 184
BpmI CTGGAG 1 cut(s) 208
Bpu1102I GCTNAGC 1 cut(s) 1185
BpuMI CCSGG 1 cut(s) 932
BsaBI GATNNNNATC 3 cut(s) 15, 228, 468
BsaJI CCNNGG 6 cut(s) 290, 401, 447, 448, 665, 870
BsaWI WCCGGW 2 cut(s) 835, 1048
Bsc4I CCNNNNNNNGG 5 cut(s) 143, 606, 835, 1180, 1272
Bse118I RCCGGY 1 cut(s) 847
Bse1I ACTGG 3 cut(s) 580, 653, 770
Bse3DI GCAATG 1 cut(s) 1114
Bse8I GATNNNNATC 3 cut(s) 15, 228, 468
BseAI TCCGGA 1 cut(s) 1048
BseBI CCWGG 4 cut(s) 138, 449, 615, 710
BseDI CCNNGG 6 cut(s) 290, 401, 447, 448, 665, 870
BseGI GGATG 5 cut(s) 229, 494, 574, 679, 1045
BseJI GATNNNNATC 3 cut(s) 15, 228, 468
BseLI CCNNNNNNNGG 5 cut(s) 143, 606, 835, 1180, 1272
BseMI GCAATG 1 cut(s) 1114
BseMII CTCAG 1 cut(s) 1331
BseNI ACTGG 3 cut(s) 580, 653, 770
BseRI GAGGAG 1 cut(s) 1146
BseSI GKGCMC 1 cut(s) 393
BseXI GCAGC 1 cut(s) 899
BsgI GTGCAG 1 cut(s) 945
Bsh1236I CGCG 2 cut(s) 156, 1135
BshFI GGCC 4 cut(s) 636, 930, 957, 994
BshNI GGYRCC 1 cut(s) 610
BsiHKAI GWGCWC 1 cut(s) 393
BsiHKCI CYCGRG 1 cut(s) 1228
BsiSI CCGG 5 cut(s) 547, 836, 848, 932, 1049
BslFI GGGAC 5 cut(s) 488, 889, 1040, 1091, 1211
BslI CCNNNNNNNGG 5 cut(s) 143, 606, 835, 1180, 1272
BsmAI GTCTC 3 cut(s) 337, 435, 816
BsmFI GGGAC 5 cut(s) 488, 889, 1040, 1091, 1211
BsmI GAATGC 2 cut(s) 796, 1327
BsnI GGCC 4 cut(s) 636, 930, 957, 994
BsoBI CYCGRG 1 cut(s) 1228
Bsp1286I GDGCHC 1 cut(s) 393
Bsp13I TCCGGA 1 cut(s) 1048
Bsp143I GATC 8 cut(s) 10, 16, 63, 418, 469, 510, 715, 1243
Bsp1720I GCTNAGC 1 cut(s) 1185
Bsp19I CCATGG 1 cut(s) 665
Bsp68I TCGCGA 1 cut(s) 156
BspACI CCGC 6 cut(s) 325, 863, 1055, 1133, 1273, 1337
BspANI GGCC 4 cut(s) 636, 930, 957, 994
BspCNI CTCAG 1 cut(s) 1330
BspEI TCCGGA 1 cut(s) 1048
BspFNI CGCG 2 cut(s) 156, 1135
BspHI TCATGA 1 cut(s) 1349
BspLI GGNNCC 3 cut(s) 135, 288, 612
BspPI GGATC 5 cut(s) 5, 71, 413, 505, 723
BspT107I GGYRCC 1 cut(s) 610
BsrBI CCGCTC 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 1114
BsrFI RCCGGY 1 cut(s) 847
BsrI ACTGG 3 cut(s) 580, 653, 770
BssAI RCCGGY 1 cut(s) 847
BssECI CCNNGG 6 cut(s) 290, 401, 447, 448, 665, 870
BssMI GATC 8 cut(s) 10, 16, 63, 418, 469, 510, 715, 1243
BssT1I CCWWGG 1 cut(s) 665
Bst2UI CCWGG 4 cut(s) 138, 449, 615, 710
Bst4CI ACNGT 9 cut(s) 116, 291, 402, 522, 556, 734, 844, 896, 1105
Bst6I CTCTTC 2 cut(s) 239, 340
BstC8I GCNNGC 3 cut(s) 638, 928, 1337
BstDEI CTNAG 2 cut(s) 1185, 1317
BstDSI CCRYGG 4 cut(s) 290, 401, 665, 870
BstF5I GGATG 5 cut(s) 229, 494, 574, 679, 1045
BstFNI CGCG 2 cut(s) 156, 1135
BstKTI GATC 8 cut(s) 13, 19, 66, 421, 472, 513, 718, 1246
BstMAI GTCTC 3 cut(s) 337, 435, 816
BstMBI GATC 8 cut(s) 10, 16, 63, 418, 469, 510, 715, 1243
BstMWI GCNNNNNNNGC 3 cut(s) 863, 1220, 1279
BstNI CCWGG 4 cut(s) 138, 449, 615, 710
BstSCI CCNGG 5 cut(s) 136, 447, 613, 708, 930
BstSLI GKGCMC 1 cut(s) 393
BstUI CGCG 2 cut(s) 156, 1135
BstV1I GCAGC 1 cut(s) 899
BstV2I GAAGAC 2 cut(s) 448, 557
BstX2I RGATCY 4 cut(s) 10, 510, 715, 1243
BstYI RGATCY 4 cut(s) 10, 510, 715, 1243
BsuI GTATCC 1 cut(s) 574
BsuRI GGCC 4 cut(s) 636, 930, 957, 994
BtgI CCRYGG 4 cut(s) 290, 401, 665, 870
BtgZI GCGATG 1 cut(s) 171
BtsCI GGATG 5 cut(s) 229, 494, 574, 679, 1045
BtsI GCAGTG 2 cut(s) 129, 216
BtsIMutI CAGTG 5 cut(s) 112, 129, 216, 573, 646
BtuMI TCGCGA 1 cut(s) 156
Cac8I GCNNGC 3 cut(s) 638, 928, 1337
CciI TCATGA 1 cut(s) 1349
Cfr10I RCCGGY 1 cut(s) 847
Cfr13I GGNCC 5 cut(s) 75, 929, 934, 956, 993
Csp6I GTAC 4 cut(s) 518, 845, 1233, 1263
CviAII CATG 5 cut(s) 368, 386, 666, 997, 1350
CviJI RGCY 9 cut(s) 35, 406, 636, 746, 930, 957, 963, 994, 1184
CviKI_1 RGCY 9 cut(s) 35, 406, 636, 746, 930, 957, 963, 994, 1184
CviQI GTAC 4 cut(s) 518, 845, 1233, 1263
DdeI CTNAG 2 cut(s) 1185, 1317
DpnI GATC 8 cut(s) 12, 18, 65, 420, 471, 512, 717, 1245
DpnII GATC 8 cut(s) 10, 16, 63, 418, 469, 510, 715, 1243
Eam1104I CTCTTC 2 cut(s) 239, 340
EarI CTCTTC 2 cut(s) 239, 340
Eco130I CCWWGG 1 cut(s) 665
Eco47I GGWCC 2 cut(s) 75, 934
Eco57I CTGAAG 1 cut(s) 740
Eco88I CYCGRG 1 cut(s) 1228
EcoO109I RGGNCCY 1 cut(s) 75
EcoRI GAATTC 1 cut(s) 593
EcoRII CCWGG 4 cut(s) 136, 447, 613, 708
EcoT14I CCWWGG 1 cut(s) 665
ErhI CCWWGG 1 cut(s) 665
FaeI CATG 5 cut(s) 371, 389, 669, 1000, 1353
FaqI GGGAC 5 cut(s) 488, 889, 1040, 1091, 1211
FatI CATG 5 cut(s) 367, 385, 665, 996, 1349
FauI CCCGC 3 cut(s) 318, 1266, 1344
Fnu4HI GCNGC 2 cut(s) 864, 888
FokI GGATG 5 cut(s) 236, 501, 581, 666, 1032
Fsp4HI GCNGC 2 cut(s) 864, 888
FspBI CTAG 2 cut(s) 257, 534
GluI GCNGC 2 cut(s) 864, 888
GsuI CTGGAG 1 cut(s) 208
HaeIII GGCC 4 cut(s) 636, 930, 957, 994
HapII CCGG 5 cut(s) 547, 836, 848, 932, 1049
Hin1II CATG 5 cut(s) 371, 389, 669, 1000, 1353
HincII GTYRAC 1 cut(s) 787
HindII GTYRAC 1 cut(s) 787
HindIII AAGCTT 1 cut(s) 33
HinfI GANTC 7 cut(s) 43, 453, 618, 779, 1064, 1141, 1313
HpaI GTTAAC 1 cut(s) 787
HpaII CCGG 5 cut(s) 547, 836, 848, 932, 1049
HphI GGTGA 1 cut(s) 722
Hpy166II GTNNAC 2 cut(s) 391, 787
Hpy188I TCNGA 7 cut(s) 10, 423, 515, 720, 738, 1015, 1312
Hpy188III TCNNGA 8 cut(s) 14, 155, 187, 257, 473, 1049, 1228, 1350
Hpy8I GTNNAC 2 cut(s) 391, 787
Hpy99I CGWCG 2 cut(s) 156, 753
HpyAV CCTTC 4 cut(s) 135, 715, 907, 1263
HpyCH4III ACNGT 9 cut(s) 116, 291, 402, 522, 556, 734, 844, 896, 1105
HpyCH4V TGCA 6 cut(s) 197, 391, 796, 887, 926, 982
HpyF10VI GCNNNNNNNGC 3 cut(s) 863, 1220, 1279
HpyF3I CTNAG 2 cut(s) 1185, 1317
Hsp92II CATG 5 cut(s) 371, 389, 669, 1000, 1353
Kpn2I TCCGGA 1 cut(s) 1048
KspAI GTTAAC 1 cut(s) 787
Kzo9I GATC 8 cut(s) 10, 16, 63, 418, 469, 510, 715, 1243
LmnI GCTCC 1 cut(s) 322
Lsp1109I GCAGC 1 cut(s) 899
MaeI CTAG 2 cut(s) 257, 534
MaeIII GTNAC 1 cut(s) 1099
MalI GATC 8 cut(s) 12, 18, 65, 420, 471, 512, 717, 1245
MbiI CCGCTC 1 cut(s) 325
MboI GATC 8 cut(s) 10, 16, 63, 418, 469, 510, 715, 1243
MboII GAAGA 8 cut(s) 226, 272, 327, 448, 520, 562, 1253, 1287
MflI RGATCY 4 cut(s) 10, 510, 715, 1243
MhlI GDGCHC 1 cut(s) 393
MlyI GAGTC 2 cut(s) 462, 1150
MmeI TCCRAC 1 cut(s) 382
MroI TCCGGA 1 cut(s) 1048
MseI TTAA 3 cut(s) 434, 786, 1008
MslI CAYNNNNRTG 1 cut(s) 1001
MspI CCGG 5 cut(s) 547, 836, 848, 932, 1049
MspR9I CCNGG 5 cut(s) 138, 449, 615, 710, 932
Mva1269I GAATGC 2 cut(s) 796, 1327
MvaI CCWGG 4 cut(s) 138, 449, 615, 710
MvnI CGCG 2 cut(s) 156, 1135
MwoI GCNNNNNNNGC 3 cut(s) 863, 1220, 1279
NciI CCSGG 1 cut(s) 932
NcoI CCATGG 1 cut(s) 665
NdeII GATC 8 cut(s) 10, 16, 63, 418, 469, 510, 715, 1243
NlaIII CATG 5 cut(s) 371, 389, 669, 1000, 1353
NlaIV GGNNCC 3 cut(s) 135, 288, 612
NruI TCGCGA 1 cut(s) 156
PagI TCATGA 1 cut(s) 1349
PasI CCCWGGG 1 cut(s) 448
PcsI WCGNNNNNNNCGW 1 cut(s) 1226
PctI GAATGC 2 cut(s) 796, 1327
PfeI GAWTC 5 cut(s) 43, 618, 779, 1064, 1313
PfoI TCCNGGA 2 cut(s) 136, 708
PkrI GCNGC 2 cut(s) 865, 889
PleI GAGTC 2 cut(s) 461, 1149
PpsI GAGTC 2 cut(s) 461, 1149
PpuMI RGGWCCY 1 cut(s) 75
Psp5II RGGWCCY 1 cut(s) 75
Psp6I CCWGG 4 cut(s) 136, 447, 613, 708
PspGI CCWGG 4 cut(s) 136, 447, 613, 708
PspN4I GGNNCC 3 cut(s) 135, 288, 612
PspPI GGNCC 5 cut(s) 75, 929, 934, 956, 993
PspPPI RGGWCCY 1 cut(s) 75
PsuI RGATCY 4 cut(s) 10, 510, 715, 1243
RruI TCGCGA 1 cut(s) 156
RsaI GTAC 4 cut(s) 519, 846, 1234, 1264
RsaNI GTAC 4 cut(s) 518, 845, 1233, 1263
RseI CAYNNNNRTG 1 cut(s) 1001
SaqAI TTAA 3 cut(s) 434, 786, 1008
SatI GCNGC 2 cut(s) 864, 888
Sau3AI GATC 8 cut(s) 10, 16, 63, 418, 469, 510, 715, 1243
Sau96I GGNCC 5 cut(s) 75, 929, 934, 956, 993
SchI GAGTC 2 cut(s) 462, 1150
ScrFI CCNGG 5 cut(s) 138, 449, 615, 710, 932
SduI GDGCHC 1 cut(s) 393
SetI ASST 8 cut(s) 37, 77, 186, 194, 205, 272, 541, 1323
SinI GGWCC 2 cut(s) 75, 934
SmiMI CAYNNNNRTG 1 cut(s) 1001
SsiI CCGC 6 cut(s) 325, 863, 1055, 1133, 1273, 1337
SspMI CTAG 2 cut(s) 257, 534
StyD4I CCNGG 5 cut(s) 136, 447, 613, 708, 930
StyI CCWWGG 1 cut(s) 665
TaaI ACNGT 9 cut(s) 116, 291, 402, 522, 556, 734, 844, 896, 1105
TatI WGTACW 1 cut(s) 1232
TauI GCSGC 1 cut(s) 866
TfiI GAWTC 5 cut(s) 43, 618, 779, 1064, 1313
Tru1I TTAA 3 cut(s) 434, 786, 1008
Tru9I TTAA 3 cut(s) 434, 786, 1008
TscAI CASTG 5 cut(s) 119, 129, 216, 580, 653
TseI GCWGC 1 cut(s) 887
TspDTI ATGAA 9 cut(s) 154, 194, 374, 448, 521, 618, 891, 965, 1241
TspRI CASTG 5 cut(s) 119, 129, 216, 580, 653
VneI GTGCAC 1 cut(s) 389
VpaK11BI GGWCC 2 cut(s) 75, 934
XapI RAATTY 3 cut(s) 307, 593, 1193
XbaI TCTAGA 1 cut(s) 256
XspI CTAG 2 cut(s) 257, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.