Rorug03G0150300

Uncharacterised conserved protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0009700
Physical Location & Seq
Reverse (-)
12410331 .. 12410713
383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0150300.1

Sequence Viewer

Length: 255 bp
ATGAGTGAAGCAAGCAAATACTCAAAACATGCTGATCCAACCAATCGATTCACCATGATCGACTGGAAGGCAGAAGCCCATGTGTTCAAGGCTGATATTTCAGGGCCGAAGAAAGAAGAGGTCAAGGTTGAGATTGAAGATGACAGGGTGCTGCAGATCAGCAGAGAAAGGAAGATAGAGAAGGAGGACAAGAACGGCAAGTGGCACCGGATCAAGAGAAGCAGCGACAAGTTCTCGATGAGGTTCGAATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FPL

Protein Analysis

84

Amino Acids

10.01

Weight (kDa)

9.07

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 23 - 83 6.1e-10 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 204
AclWI GGATC 2 cut(s) 29, 218
AgsI TTSAA 2 cut(s) 88, 137
AlwI GGATC 2 cut(s) 29, 218
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 2 cut(s) 151, 222
AspS9I GGNCC 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 43
AsuII TTCGAA 1 cut(s) 246
BanI GGYRCC 1 cut(s) 204
BbvI GCAGC 2 cut(s) 138, 234
BceAI ACGGC 1 cut(s) 211
BfmI CTRYAG 1 cut(s) 152
BisI GCNGC 2 cut(s) 152, 223
BlsI GCNGC 2 cut(s) 153, 224
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 206
Bpu14I TTCGAA 1 cut(s) 246
Bsa29I ATCGAT 1 cut(s) 46
BsaWI WCCGGW 1 cut(s) 207
Bse1I ACTGG 1 cut(s) 68
BseCI ATCGAT 1 cut(s) 46
BseNI ACTGG 1 cut(s) 68
BseXI GCAGC 2 cut(s) 138, 234
BshFI GGCC 1 cut(s) 106
BshNI GGYRCC 1 cut(s) 204
BshVI ATCGAT 1 cut(s) 46
BsiSI CCGG 1 cut(s) 208
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 1 cut(s) 106
Bsp119I TTCGAA 1 cut(s) 246
Bsp143I GATC 4 cut(s) 34, 57, 156, 210
BspANI GGCC 1 cut(s) 106
BspDI ATCGAT 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 206
BspMAI CTGCAG 1 cut(s) 156
BspPI GGATC 2 cut(s) 29, 218
BspT104I TTCGAA 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 204
BsrI ACTGG 1 cut(s) 68
BssMI GATC 4 cut(s) 34, 57, 156, 210
Bst6I CTCTTC 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 13
BstKTI GATC 4 cut(s) 37, 60, 159, 213
BstMBI GATC 4 cut(s) 34, 57, 156, 210
BstNSI RCATGY 1 cut(s) 32
BstSFI CTRYAG 1 cut(s) 152
BstV1I GCAGC 2 cut(s) 138, 234
Bsu15I ATCGAT 1 cut(s) 46
BsuRI GGCC 1 cut(s) 106
BsuTUI ATCGAT 1 cut(s) 46
Cac8I GCNNGC 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 104
ClaI ATCGAT 1 cut(s) 46
CviAII CATG 3 cut(s) 29, 55, 80
CviJI RGCY 3 cut(s) 77, 92, 106
CviKI_1 RGCY 3 cut(s) 77, 92, 106
DpnI GATC 4 cut(s) 36, 59, 158, 212
DpnII GATC 4 cut(s) 34, 57, 156, 210
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
FaeI CATG 3 cut(s) 32, 58, 83
FaiI YATR 3 cut(s) 30, 56, 81
FatI CATG 3 cut(s) 28, 54, 79
Fnu4HI GCNGC 2 cut(s) 152, 223
Fsp4HI GCNGC 2 cut(s) 152, 223
GluI GCNGC 2 cut(s) 152, 223
HaeIII GGCC 1 cut(s) 106
HapII CCGG 1 cut(s) 208
Hin1II CATG 3 cut(s) 32, 58, 83
HinfI GANTC 1 cut(s) 48
HpaII CCGG 1 cut(s) 208
HphI GGTGA 1 cut(s) 43
Hpy188III TCNNGA 2 cut(s) 214, 235
HpyAV CCTTC 2 cut(s) 61, 175
HpyCH4V TGCA 1 cut(s) 154
Hsp92II CATG 3 cut(s) 32, 58, 83
Kzo9I GATC 4 cut(s) 34, 57, 156, 210
LpnPI CCDG 4 cut(s) 49, 87, 130, 221
Lsp1109I GCAGC 2 cut(s) 138, 234
MalI GATC 4 cut(s) 36, 59, 158, 212
MboI GATC 4 cut(s) 34, 57, 156, 210
MboII GAAGA 4 cut(s) 121, 128, 149, 184
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 3 cut(s) 112, 178, 234
MspI CCGG 1 cut(s) 208
Mva1269I GAATGC 1 cut(s) 254
NdeII GATC 4 cut(s) 34, 57, 156, 210
NlaIII CATG 3 cut(s) 32, 58, 83
NlaIV GGNNCC 1 cut(s) 206
NspI RCATGY 1 cut(s) 32
NspV TTCGAA 1 cut(s) 246
PctI GAATGC 1 cut(s) 254
PfeI GAWTC 1 cut(s) 48
PkrI GCNGC 2 cut(s) 153, 224
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 104
PstI CTGCAG 1 cut(s) 156
SatI GCNGC 2 cut(s) 152, 223
Sau3AI GATC 4 cut(s) 34, 57, 156, 210
Sau96I GGNCC 1 cut(s) 104
SetI ASST 3 cut(s) 123, 129, 245
SfcI CTRYAG 1 cut(s) 152
SfuI TTCGAA 1 cut(s) 246
TaqI TCGA 4 cut(s) 46, 60, 236, 246
TfiI GAWTC 1 cut(s) 48
TseI GCWGC 2 cut(s) 151, 222
XceI RCATGY 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.