Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009700

Physical Location & Seq

Genomic Coordinates Forward (+)

12411179 .. 12413921

Gene Structure 2743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0150400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGATAGCCTTACTGTTTCTGGTTTCTGGCAACCGTTTACGCAGAGTACGAGATGTGGACATGAAGCGAGAGTTCGCATTTGTTGAATTTTATGATCCACGAGATGCTGATGATGCAAGATATAGCTTAGATGGTAGGGAAGTTGATGGCAGTCGTCTGATTGTGGAGTTCGCTAAGGGGGCTCCACGTGGTTCCCGGGAATACATGGGCAGAGGTCCTCCACCTGGATCTGGGCGCTGCTTTAATTGTGGCATTGATGGCCACTGGGCTCGTGATTGTAAGGCTGGGGATTGGAAGAATAAATGCTATCGCTGTGGAGAAAGAGGCCATATAGAAAGGCAGTGCAAAAATAGCCCAAAAGAACTAAGGCGTGAGCGGAGTCGTTCACGTTCTCCTCGCCGCGGCAGAAGTCGTAGCCCAAGTTACAGCCGAAGCTACAGCCGATCAAGGTCCCCAGTCAGGAGAGGACGGAGCTTGGAAAGGGATGATAGATCTCGGAGCCCTTCTTACAGAAGCCGTGATGTGAGCATGAGTCCATTGCCCAGGAAGCGAAGCCTTACACCTGAGGATTATAGCCCCCGTGGAAGGGGTAGCCCTTCTCCCAGAAATGGTAGCAAAAGCCCTAGCCCTAAGAGCAGAAGTCCTATTAGCCCTGACCGCGAGATTGATAGCCCTGTTCGCCCTTCTGAAGCTAATGGTCGTAGCCCCAGTCCAAGGGAGGATAGGAGCCCTGTCGATGAGGATGATTATGATAACCGCCGCTCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006417 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043335 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0080090 GO:1901700 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko04213 map04213

Pfam Domains

Protein Families

Clp_N

Protein Analysis

256

Amino Acids

29.34

Weight (kDa)

10.52

Isoelectric Point (pI)

107.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	79 - 94	2.4e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009700)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g20080 FvH4_6g20080 FvH4_6g20080 FvH4_6g20080 FvH4_6g20080 FvH4_6g20080
malus_domestica	MD12G1037800.v1.1 MD14G1036800.v1.1
prunus_persica	Prupe.7G097500_v2.0.a1 Prupe.7G097500_v2.0.a1
pyrus_communis	pycom12g03270 pycom14g03220
rosa_chinensis	RchiOBHm_Chr3g0475531
rosa_laevigata	RLG00000023835
rosa_multiflora	Rmu_sc0000539.1_g000021
rosa_roxburghii	Rroxscaffold_6G00406200
rosa_rugosa	Rorug03G0150300 Rorug03G0150400
rosa_samantha	Rh3AG199800 Rh3CG224400 Rh3DG225100
rosa_wichuraiana	Rw3G018110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	376, 762
AccII	CGCG	2 cut(s)	402, 660
AciI	CCGC	6 cut(s)	376, 400, 402, 658, 757, 760
AclWI	GGATC	2 cut(s)	89, 235
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	708
AcvI	CACGTG	1 cut(s)	188
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	8 cut(s)	224, 230, 401, 459, 585, 586, 608, 714
AgsI	TTSAA	1 cut(s)	86
AjnI	CCWGG	2 cut(s)	223, 542
AluBI	AGCT	4 cut(s)	126, 435, 474, 692
AluI	AGCT	4 cut(s)	126, 435, 474, 692
AlwI	GGATC	2 cut(s)	89, 235
Ama87I	CYCGRG	1 cut(s)	195
AoxI	GGCC	2 cut(s)	259, 325
ApeKI	GCWGC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	2 cut(s)	215, 450
AsuC2I	CCSGG	2 cut(s)	196, 197
AvaI	CYCGRG	1 cut(s)	195
AvaII	GGWCC	2 cut(s)	215, 450
AxyI	CCTNAGG	1 cut(s)	564
BalI	TGGCCA	1 cut(s)	261
BanII	GRGCYC	4 cut(s)	184, 271, 503, 731
BauI	CACGAG	2 cut(s)	99, 270
BbrPI	CACGTG	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	3 cut(s)	125, 140, 251
BceAI	ACGGC	1 cut(s)	501
BciT130I	CCWGG	2 cut(s)	225, 544
BcnI	CCSGG	2 cut(s)	196, 197
BfaI	CTAG	1 cut(s)	624
BfmI	CTRYAG	1 cut(s)	436
BfoI	RGCGCY	1 cut(s)	238
BglII	AGATCT	1 cut(s)	491
BisI	GCNGC	4 cut(s)	238, 400, 403, 760
BlsI	GCNGC	4 cut(s)	239, 401, 404, 761
Bme1390I	CCNGG	4 cut(s)	196, 197, 225, 544
Bme18I	GGWCC	2 cut(s)	215, 450
BmeT110I	CYCGRG	1 cut(s)	195
BmgT120I	GGNCC	2 cut(s)	215, 450
BmiI	GGNNCC	5 cut(s)	183, 193, 452, 500, 728
BmrFI	CCNGG	4 cut(s)	196, 197, 225, 544
BmrI	ACTGGG	3 cut(s)	274, 449, 702
BmsI	GCATC	2 cut(s)	94, 103
BmuI	ACTGGG	3 cut(s)	274, 449, 702
Bpu10I	CCTNAGC	1 cut(s)	174
BpuMI	CCSGG	2 cut(s)	196, 197
BsaAI	YACGTR	1 cut(s)	188
BsaJI	CCNNGG	5 cut(s)	195, 400, 542, 580, 713
Bsc4I	CCNNNNNNNGG	8 cut(s)	224, 230, 401, 459, 585, 586, 608, 714
Bse1I	ACTGG	3 cut(s)	269, 455, 708
Bse21I	CCTNAGG	1 cut(s)	564
Bse3DI	GCAATG	1 cut(s)	536
BseBI	CCWGG	2 cut(s)	225, 544
BseDI	CCNNGG	5 cut(s)	195, 400, 542, 580, 713
BseGI	GGATG	2 cut(s)	490, 748
BseLI	CCNNNNNNNGG	8 cut(s)	224, 230, 401, 459, 585, 586, 608, 714
BseMI	GCAATG	1 cut(s)	536
BseMII	CTCAG	1 cut(s)	555
BseNI	ACTGG	3 cut(s)	269, 455, 708
BseRI	GAGGAG	1 cut(s)	384
BseXI	GCAGC	1 cut(s)	224
BseYI	CCCAGC	1 cut(s)	284
Bsh1236I	CGCG	2 cut(s)	402, 660
BshFI	GGCC	2 cut(s)	261, 327
BsiHKCI	CYCGRG	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	196
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	8 cut(s)	224, 230, 401, 459, 585, 586, 608, 714
BsmFI	GGGAC	1 cut(s)	436
BsnI	GGCC	2 cut(s)	261, 327
BsoBI	CYCGRG	1 cut(s)	195
Bsp1286I	GDGCHC	4 cut(s)	184, 271, 503, 731
Bsp143I	GATC	4 cut(s)	94, 227, 443, 491
BspACI	CCGC	6 cut(s)	376, 400, 402, 658, 757, 760
BspANI	GGCC	2 cut(s)	261, 327
BspCNI	CTCAG	1 cut(s)	556
BspFNI	CGCG	2 cut(s)	402, 660
BspLI	GGNNCC	5 cut(s)	183, 193, 452, 500, 728
BspPI	GGATC	2 cut(s)	89, 235
BsrBI	CCGCTC	2 cut(s)	376, 762
BsrDI	GCAATG	1 cut(s)	536
BsrI	ACTGG	3 cut(s)	269, 455, 708
BssECI	CCNNGG	5 cut(s)	195, 400, 542, 580, 713
BssMI	GATC	4 cut(s)	94, 227, 443, 491
BssSI	CACGAG	2 cut(s)	99, 270
BssT1I	CCWWGG	1 cut(s)	713
Bst2BI	CACGAG	2 cut(s)	99, 270
Bst2UI	CCWGG	2 cut(s)	225, 544
Bst4CI	ACNGT	2 cut(s)	15, 35
BstBAI	YACGTR	1 cut(s)	188
BstDEI	CTNAG	5 cut(s)	127, 174, 365, 564, 630
BstDSI	CCRYGG	2 cut(s)	400, 580
BstF5I	GGATG	2 cut(s)	490, 748
BstFNI	CGCG	2 cut(s)	402, 660
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	4 cut(s)	97, 230, 446, 494
BstMBI	GATC	4 cut(s)	94, 227, 443, 491
BstMWI	GCNNNNNNNGC	8 cut(s)	113, 179, 258, 351, 547, 633, 657, 678
BstNI	CCWGG	2 cut(s)	225, 544
BstSCI	CCNGG	4 cut(s)	194, 195, 223, 542
BstSFI	CTRYAG	1 cut(s)	436
BstUI	CGCG	2 cut(s)	402, 660
BstV1I	GCAGC	1 cut(s)	224
BstX2I	RGATCY	2 cut(s)	227, 491
BstYI	RGATCY	2 cut(s)	227, 491
Bsu36I	CCTNAGG	1 cut(s)	564
BsuRI	GGCC	2 cut(s)	261, 327
BtgI	CCRYGG	2 cut(s)	400, 580
BtsCI	GGATG	2 cut(s)	490, 748
BtsI	GCAGTG	1 cut(s)	347
BtsIMutI	CAGTG	2 cut(s)	262, 347
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	2 cut(s)	215, 450
Cfr42I	CCGCGG	1 cut(s)	403
Cfr9I	CCCGGG	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	4 cut(s)	61, 205, 529, 768
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	5 cut(s)	127, 174, 365, 564, 630
DpnI	GATC	4 cut(s)	96, 229, 445, 493
DpnII	GATC	4 cut(s)	94, 227, 443, 491
EaeI	YGGCCR	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	713
Eco24I	GRGCYC	4 cut(s)	184, 271, 503, 731
Eco47I	GGWCC	2 cut(s)	215, 450
Eco57I	CTGAAG	1 cut(s)	708
Eco72I	CACGTG	1 cut(s)	188
Eco81I	CCTNAGG	1 cut(s)	564
Eco88I	CYCGRG	1 cut(s)	195
EcoO109I	RGGNCCY	2 cut(s)	215, 450
EcoRII	CCWGG	2 cut(s)	223, 542
EcoT14I	CCWWGG	1 cut(s)	713
EcoT38I	GRGCYC	4 cut(s)	184, 271, 503, 731
ErhI	CCWWGG	1 cut(s)	713
FaeI	CATG	4 cut(s)	64, 208, 532, 771
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	4 cut(s)	60, 204, 528, 767
Fnu4HI	GCNGC	4 cut(s)	238, 400, 403, 760
FokI	GGATG	2 cut(s)	497, 755
FriOI	GRGCYC	4 cut(s)	184, 271, 503, 731
Fsp4HI	GCNGC	4 cut(s)	238, 400, 403, 760
FspBI	CTAG	1 cut(s)	624
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	4 cut(s)	238, 400, 403, 760
GsaI	CCCAGC	1 cut(s)	288
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	2 cut(s)	261, 327
HapII	CCGG	1 cut(s)	196
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	4 cut(s)	64, 208, 532, 771
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HinfI	GANTC	2 cut(s)	379, 532
HpaII	CCGG	1 cut(s)	196
Hpy166II	GTNNAC	3 cut(s)	38, 58, 386
Hpy188I	TCNGA	3 cut(s)	159, 498, 688
Hpy188III	TCNNGA	2 cut(s)	272, 460
Hpy8I	GTNNAC	3 cut(s)	38, 58, 386
HpyAV	CCTTC	4 cut(s)	513, 579, 606, 693
HpyCH4III	ACNGT	2 cut(s)	15, 35
HpyCH4IV	ACGT	2 cut(s)	187, 388
HpyCH4V	TGCA	2 cut(s)	116, 345
HpyF10VI	GCNNNNNNNGC	8 cut(s)	113, 179, 258, 351, 547, 633, 657, 678
HpyF3I	CTNAG	5 cut(s)	127, 174, 365, 564, 630
HpySE526I	ACGT	2 cut(s)	187, 388
Hsp92II	CATG	4 cut(s)	64, 208, 532, 771
HspAI	GCGC	1 cut(s)	235
KspI	CCGCGG	1 cut(s)	403
Kzo9I	GATC	4 cut(s)	94, 227, 443, 491
LmnI	GCTCC	4 cut(s)	187, 471, 498, 726
Lsp1109I	GCAGC	1 cut(s)	224
LweI	GCATC	2 cut(s)	94, 103
MaeI	CTAG	1 cut(s)	624
MaeII	ACGT	2 cut(s)	187, 388
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	4 cut(s)	96, 229, 445, 493
MbiI	CCGCTC	2 cut(s)	376, 762
MboI	GATC	4 cut(s)	94, 227, 443, 491
MboII	GAAGA	1 cut(s)	307
MflI	RGATCY	2 cut(s)	227, 491
MhlI	GDGCHC	4 cut(s)	184, 271, 503, 731
MlsI	TGGCCA	1 cut(s)	261
MluCI	AATT	2 cut(s)	86, 244
MluNI	TGGCCA	1 cut(s)	261
MlyI	GAGTC	2 cut(s)	388, 541
MnlI	CCTC	8 cut(s)	206, 228, 317, 405, 458, 559, 712, 733
Mox20I	TGGCCA	1 cut(s)	261
MscI	TGGCCA	1 cut(s)	261
MseI	TTAA	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	402
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	4 cut(s)	196, 197, 225, 544
MvaI	CCWGG	2 cut(s)	225, 544
MvnI	CGCG	2 cut(s)	402, 660
MwoI	GCNNNNNNNGC	8 cut(s)	113, 179, 258, 351, 547, 633, 657, 678
NciI	CCSGG	2 cut(s)	196, 197
NdeII	GATC	4 cut(s)	94, 227, 443, 491
NlaIII	CATG	4 cut(s)	64, 208, 532, 771
NlaIV	GGNNCC	5 cut(s)	183, 193, 452, 500, 728
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PkrI	GCNGC	4 cut(s)	239, 401, 404, 761
PleI	GAGTC	2 cut(s)	387, 540
PmaCI	CACGTG	1 cut(s)	188
PmlI	CACGTG	1 cut(s)	188
PpsI	GAGTC	2 cut(s)	387, 540
Ppu21I	YACGTR	1 cut(s)	188
PpuMI	RGGWCCY	2 cut(s)	215, 450
Psp5II	RGGWCCY	2 cut(s)	215, 450
Psp6I	CCWGG	2 cut(s)	223, 542
PspCI	CACGTG	1 cut(s)	188
PspFI	CCCAGC	1 cut(s)	284
PspGI	CCWGG	2 cut(s)	223, 542
PspN4I	GGNNCC	5 cut(s)	183, 193, 452, 500, 728
PspPI	GGNCC	2 cut(s)	215, 450
PspPPI	RGGWCCY	2 cut(s)	215, 450
PsuI	RGATCY	2 cut(s)	227, 491
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SacII	CCGCGG	1 cut(s)	403
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	4 cut(s)	238, 400, 403, 760
Sau3AI	GATC	4 cut(s)	94, 227, 443, 491
Sau96I	GGNCC	2 cut(s)	215, 450
SchI	GAGTC	2 cut(s)	388, 541
ScrFI	CCNGG	4 cut(s)	196, 197, 225, 544
SduI	GDGCHC	4 cut(s)	184, 271, 503, 731
SfaNI	GCATC	2 cut(s)	94, 103
SfcI	CTRYAG	1 cut(s)	436
Sfr303I	CCGCGG	1 cut(s)	403
SgrBI	CCGCGG	1 cut(s)	403
SinI	GGWCC	2 cut(s)	215, 450
SmaI	CCCGGG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	86, 244
SsiI	CCGC	6 cut(s)	376, 400, 402, 658, 757, 760
SspMI	CTAG	1 cut(s)	624
StyD4I	CCNGG	4 cut(s)	194, 195, 223, 542
StyI	CCWWGG	1 cut(s)	713
TaaI	ACNGT	2 cut(s)	15, 35
TaiI	ACGT	2 cut(s)	190, 391
TaqI	TCGA	1 cut(s)	735
TasI	AATT	2 cut(s)	86, 244
TauI	GCSGC	3 cut(s)	402, 405, 762
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	2 cut(s)	269, 347
TseI	GCWGC	1 cut(s)	237
TspDTI	ATGAA	1 cut(s)	77
TspGWI	ACGGA	1 cut(s)	484
TspMI	CCCGGG	1 cut(s)	195
TspRI	CASTG	2 cut(s)	269, 347
VpaK11BI	GGWCC	2 cut(s)	215, 450
XapI	RAATTY	1 cut(s)	86
XmaI	CCCGGG	1 cut(s)	195
XspI	CTAG	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.