Rorug03G0320600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0018828
Physical Location & Seq
Forward (+)
34641197 .. 34643120
1924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0320600.1

Sequence Viewer

Length: 756 bp
ATGGATCGGGCTTGTAACAACAACTTGGGTGTGAGAAAAGGTGCTTGGACTAGAGAGGAAGATGATCTTCTCAGGCATTGCATGAAGACTCATGGAGAAGAAAAGTGGCACCAGGTTCCTTCCAAAGCAGGTTTGAACAGATGCAGGAAGAGCTGCAGACTAAGGTGGCTCAACTATCTGAAGCCAAACATCAAAAGAGGTGGCTTTACGGAGGATGAAACTGATCTAATATTTAGGCTTCACAAGCTTTTGGGAAACAGGTGGTCATTAATTGCTGGAAGACTTCCCGGACGAACTGGAAACGATGTGAAAAATTACTGGAACTCCCGACTACGGCTAGATTCTCGAATTAAAAATCATAAATCTCCAGAATCTATAAAGACCACAATAATAAGGCCTCGACCACGAACCTTCTCCAAAAGTTTGTATCCTTTGAACAAGAGAGCTACAATTTTAAAACCTTTTCAATTTGAAGAGAATTTTGGCCGCTCAACACAAGCATCACCAACTTCAGAGAATGAAATTGACTCACCGAAAATCATTTTAGATAACATGGATAGTAGTACTGTTGAAAGAAGCACAAGTGATTCTTGTCGTCTGGGGTTCGAGGAAGACCTCTTCACAAATTTTTGGGTTGAAGATATGGCAGAATCATCAACAACATGTTTCTCATTTACTGAAGGAGAAGTAAGTAACGTAGACTTCTGTTTCAATATGGAACTCTGGAATCATCCAAAAGAAGAAGAGAAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

29.3

Weight (kDa)

8.81

Isoelectric Point (pI)

60.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 13 - 60 5.8e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 16 - 74 3e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 66 - 110 8.8e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 69 - 119 5.6e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018828)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g00020 FvH4_4g00020 FvH4_4g00020 FvH4_4g00020 FvH4_4g00020 FvH4_4g00020
rosa_chinensis RchiOBHm_Chr4g0388861
rosa_rugosa Rorug03G0320600
rosa_samantha Rh4BG018300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 119
AccB1I GGYRCC 1 cut(s) 108
AccBSI CCGCTC 1 cut(s) 489
AccI GTMKAC 1 cut(s) 699
AciI CCGC 1 cut(s) 487
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 484
AcsI RAATTY 2 cut(s) 478, 625
AcuI CTGAAG 3 cut(s) 200, 495, 699
AfaI GTAC 1 cut(s) 565
AfiI CCNNNNNNNGG 1 cut(s) 333
AflIII ACRYGT 1 cut(s) 662
AgsI TTSAA 7 cut(s) 136, 436, 467, 473, 572, 638, 712
AjnI CCWGG 1 cut(s) 111
AjuI GAANNNNNNNTTGG 4 cut(s) 28, 60, 465, 497
AluBI AGCT 3 cut(s) 153, 247, 446
AluI AGCT 3 cut(s) 153, 247, 446
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 395, 484
ApeKI GCWGC 1 cut(s) 153
ApoI RAATTY 2 cut(s) 478, 625
AseI ATTAAT 1 cut(s) 269
AsuC2I CCSGG 1 cut(s) 288
AsuHPI GGTGA 2 cut(s) 495, 522
BanI GGYRCC 1 cut(s) 108
BbsI GAAGAC 3 cut(s) 92, 286, 618
BbvI GCAGC 1 cut(s) 140
BceAI ACGGC 1 cut(s) 350
BciT130I CCWGG 1 cut(s) 113
BciVI GTATCC 1 cut(s) 438
BcnI CCSGG 1 cut(s) 288
BfaI CTAG 2 cut(s) 51, 338
BfmI CTRYAG 1 cut(s) 154
BfuAI ACCTGC 1 cut(s) 119
BfuI GTATCC 1 cut(s) 438
BisI GCNGC 2 cut(s) 154, 487
BlsI GCNGC 2 cut(s) 155, 488
BmcAI AGTACT 1 cut(s) 565
Bme1390I CCNGG 2 cut(s) 113, 288
BmiI GGNNCC 2 cut(s) 110, 117
BmrFI CCNGG 2 cut(s) 113, 288
BmsI GCATC 2 cut(s) 131, 509
BpiI GAAGAC 3 cut(s) 92, 286, 618
BpmI CTGGAG 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 288
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 333
Bse1I ACTGG 2 cut(s) 301, 323
Bse3DI GCAATG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 113
BseGI GGATG 2 cut(s) 220, 730
BseLI CCNNNNNNNGG 1 cut(s) 333
BseMI GCAATG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 85
BseNI ACTGG 2 cut(s) 301, 323
BseXI GCAGC 1 cut(s) 140
BshFI GGCC 2 cut(s) 397, 486
BshNI GGYRCC 1 cut(s) 108
BsiSI CCGG 1 cut(s) 288
BslI CCNNNNNNNGG 1 cut(s) 333
BsnI GGCC 2 cut(s) 397, 486
Bsp143I GATC 3 cut(s) 4, 64, 223
BspACI CCGC 1 cut(s) 487
BspANI GGCC 2 cut(s) 397, 486
BspCNI CTCAG 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 110, 117
BspMAI CTGCAG 1 cut(s) 158
BspMI ACCTGC 1 cut(s) 119
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 108
BsrBI CCGCTC 1 cut(s) 489
BsrDI GCAATG 1 cut(s) 76
BsrI ACTGG 2 cut(s) 301, 323
BssMI GATC 3 cut(s) 4, 64, 223
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 568
Bst6I CTCTTC 4 cut(s) 143, 468, 623, 738
BstDEI CTNAG 2 cut(s) 71, 161
BstF5I GGATG 2 cut(s) 220, 730
BstKTI GATC 3 cut(s) 7, 67, 226
BstMBI GATC 3 cut(s) 4, 64, 223
BstMWI GCNNNNNNNGC 2 cut(s) 150, 244
BstNI CCWGG 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 666
BstSCI CCNGG 2 cut(s) 111, 286
BstSFI CTRYAG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 3 cut(s) 92, 286, 618
BsuI GTATCC 1 cut(s) 438
BsuRI GGCC 2 cut(s) 397, 486
BtsCI GGATG 2 cut(s) 220, 730
BveI ACCTGC 1 cut(s) 119
CsiI ACCWGGT 1 cut(s) 111
Csp6I GTAC 1 cut(s) 564
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 5 cut(s) 82, 92, 553, 663, 753
CviQI GTAC 1 cut(s) 564
DdeI CTNAG 2 cut(s) 71, 161
DpnI GATC 3 cut(s) 6, 66, 225
DpnII GATC 3 cut(s) 4, 64, 223
DraI TTTAAA 1 cut(s) 456
EaeI YGGCCR 1 cut(s) 484
Eam1104I CTCTTC 4 cut(s) 143, 468, 623, 738
EarI CTCTTC 4 cut(s) 143, 468, 623, 738
Eco147I AGGCCT 1 cut(s) 397
Eco57I CTGAAG 3 cut(s) 200, 495, 699
EcoRII CCWGG 1 cut(s) 111
FaeI CATG 5 cut(s) 85, 95, 556, 666, 756
FaiI YATR 9 cut(s) 83, 93, 360, 377, 554, 644, 664, 716, 754
FalI AAGNNNNNCTT 4 cut(s) 51, 83, 574, 606
FatI CATG 5 cut(s) 81, 91, 552, 662, 752
FblI GTMKAC 1 cut(s) 699
Fnu4HI GCNGC 2 cut(s) 154, 487
FokI GGATG 2 cut(s) 227, 717
Fsp4HI GCNGC 2 cut(s) 154, 487
FspBI CTAG 2 cut(s) 51, 338
GluI GCNGC 2 cut(s) 154, 487
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 2 cut(s) 397, 486
HapII CCGG 1 cut(s) 288
Hin1II CATG 5 cut(s) 85, 95, 556, 666, 756
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 7 cut(s) 88, 341, 371, 527, 587, 650, 727
HpaII CCGG 1 cut(s) 288
HphI GGTGA 2 cut(s) 495, 522
Hpy166II GTNNAC 1 cut(s) 700
Hpy188I TCNGA 2 cut(s) 180, 514
Hpy188III TCNNGA 4 cut(s) 327, 345, 368, 724
Hpy8I GTNNAC 1 cut(s) 700
HpyAV CCTTC 3 cut(s) 129, 421, 674
HpyCH4III ACNGT 1 cut(s) 568
HpyCH4IV ACGT 1 cut(s) 696
HpyCH4V TGCA 3 cut(s) 81, 144, 156
HpyF10VI GCNNNNNNNGC 2 cut(s) 150, 244
HpyF3I CTNAG 2 cut(s) 71, 161
HpySE526I ACGT 1 cut(s) 696
Hsp92II CATG 5 cut(s) 85, 95, 556, 666, 756
Kzo9I GATC 3 cut(s) 4, 64, 223
LguI GCTCTTC 1 cut(s) 143
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 2 cut(s) 131, 509
MabI ACCWGGT 1 cut(s) 111
MaeI CTAG 2 cut(s) 51, 338
MaeII ACGT 1 cut(s) 696
MaeIII GTNAC 2 cut(s) 14, 692
MalI GATC 3 cut(s) 6, 66, 225
MbiI CCGCTC 1 cut(s) 489
MboI GATC 3 cut(s) 4, 64, 223
MluCI AATT 8 cut(s) 270, 313, 348, 450, 467, 478, 522, 625
MlyI GAGTC 2 cut(s) 82, 521
MnlI CCTC 6 cut(s) 49, 191, 205, 408, 601, 626
MseI TTAA 3 cut(s) 269, 351, 455
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 2 cut(s) 113, 288
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 2 cut(s) 150, 244
NciI CCSGG 1 cut(s) 288
NdeII GATC 3 cut(s) 4, 64, 223
NlaIII CATG 5 cut(s) 85, 95, 556, 666, 756
NlaIV GGNNCC 2 cut(s) 110, 117
NspI RCATGY 1 cut(s) 666
PceI AGGCCT 1 cut(s) 397
PciI ACATGT 1 cut(s) 662
PciSI GCTCTTC 1 cut(s) 143
PfeI GAWTC 5 cut(s) 341, 371, 587, 650, 727
PfoI TCCNGGA 1 cut(s) 286
PkrI GCNGC 2 cut(s) 155, 488
PleI GAGTC 2 cut(s) 82, 521
PpsI GAGTC 2 cut(s) 82, 521
PscI ACATGT 1 cut(s) 662
PshBI ATTAAT 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 2 cut(s) 110, 117
PstI CTGCAG 1 cut(s) 158
RsaI GTAC 1 cut(s) 565
RsaNI GTAC 1 cut(s) 564
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 3 cut(s) 269, 351, 455
SatI GCNGC 2 cut(s) 154, 487
Sau3AI GATC 3 cut(s) 4, 64, 223
ScaI AGTACT 1 cut(s) 565
SchI GAGTC 2 cut(s) 82, 521
ScrFI CCNGG 2 cut(s) 113, 288
SexAI ACCWGGT 1 cut(s) 111
SfaNI GCATC 2 cut(s) 131, 509
SfcI CTRYAG 1 cut(s) 154
Sse9I AATT 8 cut(s) 270, 313, 348, 450, 467, 478, 522, 625
SseBI AGGCCT 1 cut(s) 397
SsiI CCGC 1 cut(s) 487
SspI AATATT 1 cut(s) 231
SspMI CTAG 2 cut(s) 51, 338
StuI AGGCCT 1 cut(s) 397
StyD4I CCNGG 2 cut(s) 111, 286
TaaI ACNGT 1 cut(s) 568
TaiI ACGT 1 cut(s) 699
TaqI TCGA 3 cut(s) 346, 400, 606
TasI AATT 8 cut(s) 270, 313, 348, 450, 467, 478, 522, 625
TatI WGTACW 1 cut(s) 563
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 5 cut(s) 341, 371, 587, 650, 727
Tru1I TTAA 3 cut(s) 269, 351, 455
Tru9I TTAA 3 cut(s) 269, 351, 455
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 3 cut(s) 98, 231, 534
TspGWI ACGGA 1 cut(s) 224
VspI ATTAAT 1 cut(s) 269
XapI RAATTY 2 cut(s) 478, 625
XceI RCATGY 1 cut(s) 666
XmiI GTMKAC 1 cut(s) 699
XspI CTAG 2 cut(s) 51, 338
ZrmI AGTACT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.