Rh4BG018300
HSP70 Family

hsp70-Hsp90 organizing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0018828
Physical Location & Seq
Forward (+)
2873882 .. 2876159
2278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG018300.1

Sequence Viewer

Length: 1068 bp
ATGGAAATGGAGGTTTGGAGTATGAAGATTGCTAATTTTCTTAACATTGTTGAGAAAAATGCCAAAGAAGGCAACCACACAACTCGGGATATCCTTAAAGAAATGGCTAGAGATTTTCTAGGATTCGTAAAGAGTGGGGCTCTTGAGCCAGAAATCGAGAGGCAGATTGGTTTTGCGCTGGAAAAATATGATCTTGTGGAAGCACAGTGGACACGAAAGATTATGGCAGCTGACCGTGAGCGCAAGAAAGGAAATGAGTATATGGATGAGAAAAAGTATGAACAGGCCGTCAAGCATTACTGCAATTCAATCGAGTGTAATCCTGCAGATACCAAGGCATACAGCAACAGGGCACTCGCTTACTTAAGGTTGGGCAAAAAAACTAAAGCATTGGAGGATGCTGAAAAGTGCATTGAGCTTGACCCTAAGTTTTCAAGAGGATATCTGAGGAAAGGTTCAGTTCTGTTCAACATAAGTGAGTTTACAAATGCACTCCATACCTTCCAAGAGGGATTAAAGCACAATCCAACTGACAGATATTTGATTCATGGTGTGCAACAATGTCTGGAGAGACTTAATAAGGCTGGAAGCAGGGGAGCTACAAAGAACAAGTCATTCTTCTGTGGCCTAAAGCGATTTGGCAAGGCTAGCAGCAGAGTTGTGGATGAAAGTAAATCATTGAATAATGAGCATCACATTGTTGATATTCCCCCTGTTGATGCTGTGAGTCCCAAGCCCTGCCTAATCGAGTTGAAACTCACCAATGTCATCCTGAGTGCTGAGGCTGCTGCATTAGTGAGTGATAACCTGGAGTTGCGGTTCATGAGCATGATGTGCTCGTTCGTTGCGGTATGTGGTCTCATTGAGATTTTGAGGCACAGAAGACTGATTGAGAACAAGTTGGGCGTACTGAAGCTAATTTGTGCCTCAGTGATGCTGATTTACTGCACCATAATGTATGCTACATCAAAGCTCCACAAGATTCTGCCTCATCTAGAAAGCTTCGGGCGAGAAGCCTGGCCCTTTCATGCCTGTGTGATAATAGCATCAATTCTTTTTAACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05020 map05020
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

40.4

Weight (kDa)

8.9

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_BSK1_C PF25575 64 - 145 1.7e-08 Serine/threonine-protein kinase BSK1-like, TPR repeats
TPR_11 PF13414 84 - 125 1e-08 TPR repeat
TPR_1 PF00515 112 - 144 7.7e-09 Tetratricopeptide repeat
TPR_2 PF07719 112 - 143 7.3e-07 Tetratricopeptide repeat
TPR_8 PF13181 112 - 143 2.1e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018828)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g00020 FvH4_4g00020 FvH4_4g00020 FvH4_4g00020 FvH4_4g00020 FvH4_4g00020
rosa_chinensis RchiOBHm_Chr4g0388861
rosa_rugosa Rorug03G0320600
rosa_samantha Rh4BG018300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 817, 848
AcuI CTGAAG 1 cut(s) 932
AfaI GTAC 1 cut(s) 909
AflII CTTAAG 1 cut(s) 364
AgsI TTSAA 5 cut(s) 309, 435, 469, 682, 754
AjnI CCWGG 2 cut(s) 807, 1016
AloI GAACNNNNNNTCC 2 cut(s) 803, 835
AluBI AGCT 6 cut(s) 230, 418, 599, 916, 973, 1002
AluI AGCT 6 cut(s) 230, 418, 599, 916, 973, 1002
Alw21I GWGCWC 1 cut(s) 839
Alw26I GTCTC 2 cut(s) 565, 863
Ama87I CYCGRG 1 cut(s) 84
AoxI GGCC 3 cut(s) 285, 625, 1019
ApeKI GCWGC 4 cut(s) 227, 651, 785, 788
ArsI GACNNNNNNTTYG 2 cut(s) 596, 628
AspLEI GCGC 2 cut(s) 178, 243
AspS9I GGNCC 1 cut(s) 1020
AsuHPI GGTGA 1 cut(s) 751
AsuNHI GCTAGC 1 cut(s) 647
AvaI CYCGRG 1 cut(s) 84
BaeGI GKGCMC 1 cut(s) 355
BanII GRGCYC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 889
Bbv12I GWGCWC 1 cut(s) 839
BbvCI CCTCAGC 1 cut(s) 780
BbvI GCAGC 4 cut(s) 239, 663, 772, 775
BceAI ACGGC 1 cut(s) 272
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BciT130I CCWGG 2 cut(s) 809, 1018
BcoDI GTCTC 2 cut(s) 565, 863
BfaI CTAG 4 cut(s) 108, 119, 648, 995
BfmI CTRYAG 1 cut(s) 324
BfrI CTTAAG 1 cut(s) 364
BisI GCNGC 4 cut(s) 228, 652, 786, 789
BlsI GCNGC 4 cut(s) 229, 653, 787, 790
Bme1390I CCNGG 2 cut(s) 809, 1018
BmeT110I CYCGRG 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 1020
BmrFI CCNGG 2 cut(s) 809, 1018
BmsI GCATC 5 cut(s) 388, 700, 709, 924, 1055
BmtI GCTAGC 1 cut(s) 651
BpiI GAAGAC 1 cut(s) 889
BplI GAGNNNNNCTC 2 cut(s) 124, 156
BpmI CTGGAG 2 cut(s) 587, 830
Bpu10I CCTNAGC 1 cut(s) 780
BpuEI CTTGAG 1 cut(s) 164
BsaI GGTCTC 1 cut(s) 863
BsaJI CCNNGG 1 cut(s) 333
BsaXI ACNNNNNCTCC 2 cut(s) 803, 833
BseBI CCWGG 2 cut(s) 809, 1018
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 4 cut(s) 271, 403, 670, 768
BseMII CTCAG 4 cut(s) 437, 764, 771, 942
BseSI GKGCMC 1 cut(s) 355
BseXI GCAGC 4 cut(s) 239, 663, 772, 775
BsgI GTGCAG 1 cut(s) 931
BshFI GGCC 3 cut(s) 287, 627, 1021
BsiHKAI GWGCWC 1 cut(s) 839
BsiHKCI CYCGRG 1 cut(s) 84
BslFI GGGAC 1 cut(s) 714
BsmAI GTCTC 2 cut(s) 565, 863
BsmFI GGGAC 1 cut(s) 714
BsnI GGCC 3 cut(s) 287, 627, 1021
Bso31I GGTCTC 1 cut(s) 863
BsoBI CYCGRG 1 cut(s) 84
Bsp1286I GDGCHC 3 cut(s) 142, 355, 839
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 2 cut(s) 817, 848
BspANI GGCC 3 cut(s) 287, 627, 1021
BspCNI CTCAG 4 cut(s) 438, 765, 772, 941
BspHI TCATGA 1 cut(s) 822
BspMAI CTGCAG 1 cut(s) 328
BspOI GCTAGC 1 cut(s) 651
BspTI CTTAAG 1 cut(s) 364
BspTNI GGTCTC 1 cut(s) 863
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 1 cut(s) 190
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 2 cut(s) 809, 1018
Bst4CI ACNGT 2 cut(s) 207, 236
BstAFI CTTAAG 1 cut(s) 364
BstAPI GCANNNNNTGC 1 cut(s) 834
BstC8I GCNNGC 1 cut(s) 649
BstDEI CTNAG 5 cut(s) 426, 446, 773, 780, 928
BstF5I GGATG 4 cut(s) 271, 403, 670, 768
BstHHI GCGC 2 cut(s) 178, 243
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 2 cut(s) 565, 863
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 3 cut(s) 648, 785, 834
BstNI CCWGG 2 cut(s) 809, 1018
BstSCI CCNGG 2 cut(s) 807, 1016
BstSFI CTRYAG 1 cut(s) 324
BstSLI GKGCMC 1 cut(s) 355
BstV1I GCAGC 4 cut(s) 239, 663, 772, 775
BstV2I GAAGAC 1 cut(s) 889
BsuRI GGCC 3 cut(s) 287, 627, 1021
BtsCI GGATG 4 cut(s) 271, 403, 670, 768
BtsIMutI CAGTG 2 cut(s) 212, 936
Cac8I GCNNGC 1 cut(s) 649
CciI TCATGA 1 cut(s) 822
CfoI GCGC 2 cut(s) 178, 243
Cfr13I GGNCC 1 cut(s) 1020
Csp6I GTAC 1 cut(s) 908
CviAII CATG 4 cut(s) 548, 823, 829, 1028
CviQI GTAC 1 cut(s) 908
DdeI CTNAG 5 cut(s) 426, 446, 773, 780, 928
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 142
Eco31I GGTCTC 1 cut(s) 863
Eco32I GATATC 2 cut(s) 91, 443
Eco57I CTGAAG 1 cut(s) 932
Eco88I CYCGRG 1 cut(s) 84
EcoRII CCWGG 2 cut(s) 807, 1016
EcoRV GATATC 2 cut(s) 91, 443
EcoT14I CCWWGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 4 cut(s) 551, 826, 832, 1031
FalI AAGNNNNNCTT 2 cut(s) 602, 634
FaqI GGGAC 1 cut(s) 714
FatI CATG 4 cut(s) 547, 822, 828, 1027
Fnu4HI GCNGC 4 cut(s) 228, 652, 786, 789
FokI GGATG 4 cut(s) 278, 410, 677, 755
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 4 cut(s) 228, 652, 786, 789
FspBI CTAG 4 cut(s) 108, 119, 648, 995
GlaI GCGC 2 cut(s) 177, 242
GluI GCNGC 4 cut(s) 228, 652, 786, 789
GsuI CTGGAG 2 cut(s) 587, 830
HaeIII GGCC 3 cut(s) 287, 627, 1021
HhaI GCGC 2 cut(s) 178, 243
Hin1II CATG 4 cut(s) 551, 826, 832, 1031
Hin6I GCGC 2 cut(s) 176, 241
HinP1I GCGC 2 cut(s) 176, 241
HindIII AAGCTT 1 cut(s) 1000
HinfI GANTC 4 cut(s) 123, 544, 727, 982
HphI GGTGA 1 cut(s) 751
Hpy166II GTNNAC 2 cut(s) 210, 483
Hpy188I TCNGA 1 cut(s) 447
Hpy188III TCNNGA 8 cut(s) 86, 143, 157, 435, 566, 772, 823, 995
Hpy8I GTNNAC 2 cut(s) 210, 483
HpyAV CCTTC 2 cut(s) 62, 511
HpyCH4III ACNGT 2 cut(s) 207, 236
HpyCH4V TGCA 7 cut(s) 303, 326, 411, 491, 556, 791, 948
HpyF10VI GCNNNNNNNGC 3 cut(s) 648, 785, 834
HpyF3I CTNAG 5 cut(s) 426, 446, 773, 780, 928
Hsp92II CATG 4 cut(s) 551, 826, 832, 1031
HspAI GCGC 2 cut(s) 176, 241
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 2 cut(s) 596, 978
Lsp1109I GCAGC 4 cut(s) 239, 663, 772, 775
LweI GCATC 5 cut(s) 388, 700, 709, 924, 1055
MaeI CTAG 4 cut(s) 108, 119, 648, 995
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 3 cut(s) 37, 610, 894
MfeI CAATTG 1 cut(s) 1063
MhlI GDGCHC 3 cut(s) 142, 355, 839
MluCI AATT 5 cut(s) 34, 304, 918, 1050, 1063
MlyI GAGTC 1 cut(s) 736
MmeI TCCRAC 1 cut(s) 551
MseI TTAA 6 cut(s) 42, 96, 365, 515, 576, 1059
MslI CAYNNNNRTG 3 cut(s) 827, 953, 1032
MspA1I CMGCKG 1 cut(s) 230
MspCI CTTAAG 1 cut(s) 364
MspR9I CCNGG 2 cut(s) 809, 1018
MunI CAATTG 1 cut(s) 1063
MvaI CCWGG 2 cut(s) 809, 1018
MwoI GCNNNNNNNGC 3 cut(s) 648, 785, 834
NdeII GATC 1 cut(s) 190
NheI GCTAGC 1 cut(s) 647
NlaIII CATG 4 cut(s) 551, 826, 832, 1031
PagI TCATGA 1 cut(s) 822
PfeI GAWTC 3 cut(s) 123, 544, 982
PkrI GCNGC 4 cut(s) 229, 653, 787, 790
PleI GAGTC 1 cut(s) 735
PpsI GAGTC 1 cut(s) 735
Psp6I CCWGG 2 cut(s) 807, 1016
PspGI CCWGG 2 cut(s) 807, 1016
PspPI GGNCC 1 cut(s) 1020
PstI CTGCAG 1 cut(s) 328
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 1 cut(s) 909
RsaNI GTAC 1 cut(s) 908
RseI CAYNNNNRTG 3 cut(s) 827, 953, 1032
SaqAI TTAA 6 cut(s) 42, 96, 365, 515, 576, 1059
SatI GCNGC 4 cut(s) 228, 652, 786, 789
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 1 cut(s) 1020
SchI GAGTC 1 cut(s) 736
ScrFI CCNGG 2 cut(s) 809, 1018
SduI GDGCHC 3 cut(s) 142, 355, 839
SfaNI GCATC 5 cut(s) 388, 700, 709, 924, 1055
SfcI CTRYAG 1 cut(s) 324
SmiMI CAYNNNNRTG 3 cut(s) 827, 953, 1032
SmlI CTYRAG 2 cut(s) 143, 364
SmoI CTYRAG 2 cut(s) 143, 364
Sse9I AATT 5 cut(s) 34, 304, 918, 1050, 1063
SsiI CCGC 2 cut(s) 817, 848
SspMI CTAG 4 cut(s) 108, 119, 648, 995
StyD4I CCNGG 2 cut(s) 807, 1016
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 2 cut(s) 207, 236
TaqI TCGA 3 cut(s) 156, 312, 747
TasI AATT 5 cut(s) 34, 304, 918, 1050, 1063
TfiI GAWTC 3 cut(s) 123, 544, 982
Tru1I TTAA 6 cut(s) 42, 96, 365, 515, 576, 1059
Tru9I TTAA 6 cut(s) 42, 96, 365, 515, 576, 1059
TscAI CASTG 2 cut(s) 212, 936
TseI GCWGC 4 cut(s) 227, 651, 785, 788
TspDTI ATGAA 6 cut(s) 38, 294, 536, 681, 811, 1016
TspRI CASTG 2 cut(s) 212, 936
Vha464I CTTAAG 1 cut(s) 364
XbaI TCTAGA 1 cut(s) 994
XspI CTAG 4 cut(s) 108, 119, 648, 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.