Rorug03G0324100

Belongs to the glycosyl hydrolase 47 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0008462
Physical Location & Seq
Forward (+)
35481191 .. 35482798
1608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0324100.1

Sequence Viewer

Length: 552 bp
ATGGCGACTGAAGAGGTCAAGAAACCTCCATCACTCCCTCCTTACCCTGAGATGATTCTGAAGGCCATCGAAGGGTTGAATGAGAAGAATGGCTCAAACAAGTCGTCAATATCAAGATTCATTGAATCAAGTTATGGGGAATTGCCAGCCGGACACTCTGGACTCCTGTCTAATCACCTCAGCAAAATGAAAGATAGCGGTGAGTTGGTGTTCTGGAAAAACAACTACACAAAGCCGGACCCAAATGCCCCACCGAGACGGGGACGTGGGAGGCCACCAAAACCCAGGGATCCAGATCAGCCACAGGTTGCTAACTTGCCATCAGGAAGGGGCAGGGGACGCCCACCTAAGGATCCTGATGCACCCCCAAGACCCCCCAAGGTCAAGGCATCTTCAGGGAGCGGGAAACCTAGAGGACGACCGAGGAAGATGGCTCGGCCTACCGGAGGTTTAAGTGGCTCGACAACCGTAACAGATGCAGTGACTGGGAGGCCGAGGGGTAGACCTCCAAAGGTGAAGGATTCATTGAATGAATTGAGCATTCAGCAGTAG

Protein Analysis

183

Amino Acids

19.76

Weight (kDa)

10.53

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 13 - 73 4.4e-09 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 402
AccI GTMKAC 1 cut(s) 502
AciI CCGC 2 cut(s) 198, 402
AclWI GGATC 4 cut(s) 284, 297, 347, 360
AcuI CTGAAG 3 cut(s) 30, 80, 378
AcyI GRCGYC 1 cut(s) 340
AfiI CCNNNNNNNGG 4 cut(s) 72, 260, 349, 446
AgsI TTSAA 3 cut(s) 79, 125, 529
AjiI CACGTC 1 cut(s) 266
AjnI CCWGG 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 250
AlwI GGATC 4 cut(s) 284, 297, 347, 360
AlwNI CAGNNNCTG 1 cut(s) 485
AoxI GGCC 4 cut(s) 63, 272, 437, 491
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AspS9I GGNCC 1 cut(s) 238
AsuHPI GGTGA 3 cut(s) 167, 212, 526
AvaII GGWCC 1 cut(s) 238
AxyI CCTNAGG 1 cut(s) 348
BamHI GGATCC 2 cut(s) 289, 352
BbvCI CCTCAGC 1 cut(s) 179
BccI CCATC 4 cut(s) 37, 74, 328, 424
BciT130I CCWGG 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 250
BfaI CTAG 1 cut(s) 411
Bme1390I CCNGG 1 cut(s) 286
Bme18I GGWCC 1 cut(s) 238
BmgBI CACGTC 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 3 cut(s) 240, 291, 354
BmrFI CCNGG 1 cut(s) 286
BmrI ACTGGG 1 cut(s) 495
BmsI GCATC 3 cut(s) 349, 398, 466
BmuI ACTGGG 1 cut(s) 495
BoxI GACNNNNGTC 1 cut(s) 166
Bpu10I CCTNAGC 1 cut(s) 179
BsaBI GATNNNNATC 1 cut(s) 294
BsaHI GRCGYC 1 cut(s) 340
BsaJI CCNNGG 5 cut(s) 284, 285, 378, 422, 494
BsaWI WCCGGW 1 cut(s) 443
Bsc4I CCNNNNNNNGG 4 cut(s) 72, 260, 349, 446
Bse1I ACTGG 1 cut(s) 490
Bse21I CCTNAGG 1 cut(s) 348
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 1 cut(s) 286
BseDI CCNNGG 5 cut(s) 284, 285, 378, 422, 494
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 4 cut(s) 72, 260, 349, 446
BseMII CTCAG 2 cut(s) 39, 193
BseNI ACTGG 1 cut(s) 490
Bsh1285I CGRYCG 1 cut(s) 422
BshFI GGCC 4 cut(s) 65, 274, 439, 493
BsiEI CGRYCG 1 cut(s) 422
BsiSI CCGG 3 cut(s) 150, 236, 444
BslFI GGGAC 2 cut(s) 276, 351
BslI CCNNNNNNNGG 4 cut(s) 72, 260, 349, 446
BsmAI GTCTC 1 cut(s) 250
BsmBI CGTCTC 1 cut(s) 250
BsmFI GGGAC 2 cut(s) 276, 351
BsmI GAATGC 1 cut(s) 540
BsnI GGCC 4 cut(s) 65, 274, 439, 493
Bsp143I GATC 3 cut(s) 289, 295, 352
BspACI CCGC 2 cut(s) 198, 402
BspANI GGCC 4 cut(s) 65, 274, 439, 493
BspCNI CTCAG 2 cut(s) 40, 192
BspLI GGNNCC 3 cut(s) 240, 291, 354
BspPI GGATC 4 cut(s) 284, 297, 347, 360
BsrBI CCGCTC 1 cut(s) 402
BsrI ACTGG 1 cut(s) 490
BssECI CCNNGG 5 cut(s) 284, 285, 378, 422, 494
BssMI GATC 3 cut(s) 289, 295, 352
BssNI GRCGYC 1 cut(s) 340
BssT1I CCWWGG 1 cut(s) 378
Bst2UI CCWGG 1 cut(s) 286
Bst4CI ACNGT 1 cut(s) 469
Bst6I CTCTTC 1 cut(s) 6
BstACI GRCGYC 1 cut(s) 340
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 3 cut(s) 48, 179, 348
BstENI CCTNNNNNAGG 1 cut(s) 444
BstKTI GATC 3 cut(s) 292, 298, 355
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 3 cut(s) 289, 295, 352
BstMCI CGRYCG 1 cut(s) 422
BstMWI GCNNNNNNNGC 1 cut(s) 339
BstNI CCWGG 1 cut(s) 286
BstPAI GACNNNNGTC 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 284
BstX2I RGATCY 2 cut(s) 289, 352
BstYI RGATCY 2 cut(s) 289, 352
Bsu36I CCTNAGG 1 cut(s) 348
BsuRI GGCC 4 cut(s) 65, 274, 439, 493
BtrI CACGTC 1 cut(s) 266
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 1 cut(s) 486
Cac8I GCNNGC 1 cut(s) 147
CaiI CAGNNNCTG 1 cut(s) 485
Cfr13I GGNCC 1 cut(s) 238
CseI GACGC 1 cut(s) 348
DdeI CTNAG 3 cut(s) 48, 179, 348
DpnI GATC 3 cut(s) 291, 297, 354
DpnII GATC 3 cut(s) 289, 295, 352
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 238
Eco57I CTGAAG 3 cut(s) 30, 80, 378
Eco81I CCTNAGG 1 cut(s) 348
EcoNI CCTNNNNNAGG 1 cut(s) 444
EcoRII CCWGG 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 378
Esp3I CGTCTC 1 cut(s) 250
FaiI YATR 1 cut(s) 135
FaqI GGGAC 2 cut(s) 276, 351
FauI CCCGC 1 cut(s) 395
FblI GTMKAC 1 cut(s) 502
FspBI CTAG 1 cut(s) 411
HaeIII GGCC 4 cut(s) 65, 274, 439, 493
HapII CCGG 3 cut(s) 150, 236, 444
HgaI GACGC 1 cut(s) 348
Hin1I GRCGYC 1 cut(s) 340
HinfI GANTC 5 cut(s) 55, 117, 125, 162, 521
HpaII CCGG 3 cut(s) 150, 236, 444
HphI GGTGA 3 cut(s) 167, 212, 526
Hpy166II GTNNAC 1 cut(s) 503
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 7 cut(s) 19, 114, 159, 214, 293, 324, 356
Hpy8I GTNNAC 1 cut(s) 503
HpyAV CCTTC 4 cut(s) 55, 65, 321, 511
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 2 cut(s) 362, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 339
HpyF3I CTNAG 3 cut(s) 48, 179, 348
HpySE526I ACGT 1 cut(s) 265
Hsp92I GRCGYC 1 cut(s) 340
Kzo9I GATC 3 cut(s) 289, 295, 352
LmnI GCTCC 1 cut(s) 399
LweI GCATC 3 cut(s) 349, 398, 466
MaeI CTAG 1 cut(s) 411
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 2 cut(s) 469, 481
MalI GATC 3 cut(s) 291, 297, 354
MbiI CCGCTC 1 cut(s) 402
MboI GATC 3 cut(s) 289, 295, 352
MboII GAAGA 4 cut(s) 23, 97, 384, 439
MflI RGATCY 2 cut(s) 289, 352
MluCI AATT 2 cut(s) 140, 533
MlyI GAGTC 1 cut(s) 156
MseI TTAA 1 cut(s) 452
MspI CCGG 3 cut(s) 150, 236, 444
MspR9I CCNGG 1 cut(s) 286
Mva1269I GAATGC 1 cut(s) 540
MvaI CCWGG 1 cut(s) 286
MwoI GCNNNNNNNGC 1 cut(s) 339
NdeII GATC 3 cut(s) 289, 295, 352
NlaIV GGNNCC 3 cut(s) 240, 291, 354
NmeAIII GCCGAG 2 cut(s) 415, 519
NmuCI GTSAC 1 cut(s) 481
PasI CCCWGGG 1 cut(s) 285
PctI GAATGC 1 cut(s) 540
PfeI GAWTC 4 cut(s) 55, 117, 125, 521
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
PshAI GACNNNNGTC 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspN4I GGNNCC 3 cut(s) 240, 291, 354
PspPI GGNCC 1 cut(s) 238
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 2 cut(s) 289, 352
SaqAI TTAA 1 cut(s) 452
Sau3AI GATC 3 cut(s) 289, 295, 352
Sau96I GGNCC 1 cut(s) 238
SchI GAGTC 1 cut(s) 156
ScrFI CCNGG 1 cut(s) 286
SfaNI GCATC 3 cut(s) 349, 398, 466
SinI GGWCC 1 cut(s) 238
Sse9I AATT 2 cut(s) 140, 533
SsiI CCGC 2 cut(s) 198, 402
SspMI CTAG 1 cut(s) 411
StyD4I CCNGG 1 cut(s) 284
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 1 cut(s) 469
TaiI ACGT 1 cut(s) 268
TaqI TCGA 2 cut(s) 69, 461
TaqII GACCGA 1 cut(s) 436
TasI AATT 2 cut(s) 140, 533
TfiI GAWTC 4 cut(s) 55, 117, 125, 521
Tru1I TTAA 1 cut(s) 452
Tru9I TTAA 1 cut(s) 452
TscAI CASTG 1 cut(s) 486
TseFI GTSAC 1 cut(s) 481
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 4 cut(s) 109, 203, 513, 546
TspRI CASTG 1 cut(s) 486
VpaK11BI GGWCC 1 cut(s) 238
XagI CCTNNNNNAGG 1 cut(s) 444
XmiI GTMKAC 1 cut(s) 502
XspI CTAG 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.