Rorug04G0109800

Protein of unknown function (DUF1191)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
17219907 .. 17220134
228 bp
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UTR
Exon/CDS
Intron
Rorug04G0109800.1

Sequence Viewer

Length: 228 bp
ATGATGCTTCTTCGTTATAGAGTTATCTTTCCGGTATGTCACTGCTATGTCAAAGCAAATGGAGTAACCATTCGTGCACTCTTTGCTAATTGGTGCATGTTCGAATACATAGATTTTGTGGAGAGTCCTGATATTATTTCAGGATGTTCTCTTTATGCTTATTGTAATCTGGGGTTCAGGCTCTACGTCCCCCCCTTGTATTCTGCAATTTCATTAATCAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.66

Weight (kDa)

8.32

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021479)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0207381
rosa_laevigata RLG00000020901
rosa_rugosa Rorug04G0109800
rosa_samantha Rh1CG080100 Rh1DG086500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Alw21I GWGCWC 1 cut(s) 79
Alw44I GTGCAC 1 cut(s) 75
ApaLI GTGCAC 1 cut(s) 75
AseI ATTAAT 1 cut(s) 215
AsuII TTCGAA 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 79
Bpu14I TTCGAA 1 cut(s) 102
BsaWI WCCGGW 1 cut(s) 31
BseGI GGATG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 79
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 173
Bsp119I TTCGAA 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 79
BspT104I TTCGAA 1 cut(s) 102
BstAPI GCANNNNNTGC 1 cut(s) 83
BstBI TTCGAA 1 cut(s) 102
BstF5I GGATG 1 cut(s) 149
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNSI RCATGY 1 cut(s) 100
BstSLI GKGCMC 1 cut(s) 79
BtsCI GGATG 1 cut(s) 149
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 40
CviAII CATG 1 cut(s) 97
CviJI RGCY 2 cut(s) 181, 224
CviKI_1 RGCY 2 cut(s) 181, 224
FaeI CATG 1 cut(s) 100
FaiI YATR 6 cut(s) 18, 37, 48, 98, 110, 156
FaqI GGGAC 1 cut(s) 173
FatI CATG 1 cut(s) 96
FokI GGATG 1 cut(s) 156
HapII CCGG 1 cut(s) 32
Hin1II CATG 1 cut(s) 100
HinfI GANTC 1 cut(s) 124
HpaII CCGG 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 77
Hpy188III TCNNGA 2 cut(s) 128, 141
Hpy8I GTNNAC 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 3 cut(s) 77, 96, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 1 cut(s) 100
LpnPI CCDG 5 cut(s) 45, 126, 141, 155, 163
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 2 cut(s) 38, 64
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 2 cut(s) 88, 207
MlyI GAGTC 1 cut(s) 133
MseI TTAA 1 cut(s) 215
MslI CAYNNNNRTG 1 cut(s) 45
MspI CCGG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 83
NlaIII CATG 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 38
NspI RCATGY 1 cut(s) 100
NspV TTCGAA 1 cut(s) 102
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
PshBI ATTAAT 1 cut(s) 215
RseI CAYNNNNRTG 1 cut(s) 45
SaqAI TTAA 1 cut(s) 215
SchI GAGTC 1 cut(s) 133
SduI GDGCHC 1 cut(s) 79
SetI ASST 1 cut(s) 189
SfuI TTCGAA 1 cut(s) 102
SgeI CNNG 8 cut(s) 44, 86, 109, 140, 153, 182, 190, 208
SmiMI CAYNNNNRTG 1 cut(s) 45
Sse9I AATT 2 cut(s) 88, 207
TaiI ACGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 102
TasI AATT 2 cut(s) 88, 207
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TscAI CASTG 1 cut(s) 47
TseFI GTSAC 1 cut(s) 38
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 1 cut(s) 201
TspRI CASTG 1 cut(s) 47
VneI GTGCAC 1 cut(s) 75
VspI ATTAAT 1 cut(s) 215
XceI RCATGY 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.