Rh1DG086500

Protein of unknown function (DUF1191)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
16069509 .. 16070392
884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG086500.1

Sequence Viewer

Length: 390 bp
ATGGCAAGGAATTGGGGGCCTTATGACTCGGCGAAGAAGCAGGTGGCAAAGCCGATGATGGCGGAGATGGTGAGAGTTTTGGTGGATGAGAATAGGCTGAAGAGTGTTCTTGCGGACATTGTTGGGGCCACAAGTGTTACTGGGCAGCTTTGCTTCTTAAAGACCCCAGGCCTAATTTCTGGTTCGACAAGGCTTAAGGGAAAGAAGAAGAGTAATTCAAAAACGTGGATAATTGTTGGGTCTGTACTCGGTGGACTACCACTATTGGCGTTCGTGCTACTCTGGGTACATAAATACAAGGAAAGGAAGCATTTGGAAGAGATGGAGAAAGCTGCAGATTTAGAAGAAGCTCTGCATATGACAACAGTTGGGGATACAAAAGCACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

129

Amino Acids

14.25

Weight (kDa)

9.64

Isoelectric Point (pI)

10.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021479)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0207381
rosa_laevigata RLG00000020901
rosa_rugosa Rorug04G0109800
rosa_samantha Rh1CG080100 Rh1DG086500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 31
Acc36I ACCTGC 1 cut(s) 31
AciI CCGC 2 cut(s) 62, 113
AcuI CTGAAG 1 cut(s) 119
AfaI GTAC 2 cut(s) 246, 288
AflII CTTAAG 1 cut(s) 194
AgsI TTSAA 1 cut(s) 219
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 3 cut(s) 148, 332, 350
AluI AGCT 3 cut(s) 148, 332, 350
AoxI GGCC 3 cut(s) 17, 126, 169
ApeKI GCWGC 2 cut(s) 145, 332
AspS9I GGNCC 2 cut(s) 17, 126
AsuHPI GGTGA 1 cut(s) 82
BbvI GCAGC 2 cut(s) 157, 319
BccI CCATC 3 cut(s) 52, 61, 316
BciT130I CCWGG 1 cut(s) 168
BciVI GTATCC 1 cut(s) 367
BfmI CTRYAG 1 cut(s) 333
BfrI CTTAAG 1 cut(s) 194
BfuAI ACCTGC 1 cut(s) 31
BfuI GTATCC 1 cut(s) 367
BisI GCNGC 2 cut(s) 146, 333
BlsI GCNGC 2 cut(s) 147, 334
Bme1390I CCNGG 1 cut(s) 168
BmgT120I GGNCC 2 cut(s) 17, 126
BmiI GGNNCC 2 cut(s) 18, 127
BmrFI CCNGG 1 cut(s) 168
BmrI ACTGGG 1 cut(s) 150
BmuI ACTGGG 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 145
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 145
BseXI GCAGC 2 cut(s) 157, 319
BshFI GGCC 3 cut(s) 19, 128, 171
BsnI GGCC 3 cut(s) 19, 128, 171
BspACI CCGC 2 cut(s) 62, 113
BspANI GGCC 3 cut(s) 19, 128, 171
BspLI GGNNCC 2 cut(s) 18, 127
BspMAI CTGCAG 1 cut(s) 337
BspMI ACCTGC 1 cut(s) 31
BspTI CTTAAG 1 cut(s) 194
BsrI ACTGG 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 3 cut(s) 95, 203, 312
BstAFI CTTAAG 1 cut(s) 194
BstF5I GGATG 1 cut(s) 91
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 2 cut(s) 157, 319
BsuI GTATCC 1 cut(s) 367
BsuRI GGCC 3 cut(s) 19, 128, 171
BtsCI GGATG 1 cut(s) 91
BveI ACCTGC 1 cut(s) 31
Cfr13I GGNCC 2 cut(s) 17, 126
Csp6I GTAC 2 cut(s) 245, 287
CviJI RGCY 9 cut(s) 19, 52, 97, 128, 148, 171, 193, 332, 350
CviKI_1 RGCY 9 cut(s) 19, 52, 97, 128, 148, 171, 193, 332, 350
CviQI GTAC 2 cut(s) 245, 287
Eam1104I CTCTTC 3 cut(s) 95, 203, 312
EarI CTCTTC 3 cut(s) 95, 203, 312
EciI GGCGGA 1 cut(s) 77
Eco147I AGGCCT 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 166
FaiI YATR 4 cut(s) 24, 291, 357, 359
FauNDI CATATG 1 cut(s) 357
Fnu4HI GCNGC 2 cut(s) 146, 333
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 2 cut(s) 146, 333
GluI GCNGC 2 cut(s) 146, 333
HaeIII GGCC 3 cut(s) 19, 128, 171
HinfI GANTC 1 cut(s) 26
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 254
Hpy8I GTNNAC 1 cut(s) 254
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 2 cut(s) 335, 355
HpySE526I ACGT 1 cut(s) 224
LpnPI CCDG 6 cut(s) 26, 126, 153, 165, 180, 268
Lsp1109I GCAGC 2 cut(s) 157, 319
MaeII ACGT 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 136
MboII GAAGA 6 cut(s) 46, 112, 217, 220, 329, 356
MluCI AATT 4 cut(s) 10, 174, 214, 231
MlyI GAGTC 1 cut(s) 20
MseI TTAA 2 cut(s) 158, 195
MspCI CTTAAG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
NdeI CATATG 1 cut(s) 357
NlaIV GGNNCC 2 cut(s) 18, 127
NmeAIII GCCGAG 1 cut(s) 8
PaqCI CACCTGC 1 cut(s) 31
PceI AGGCCT 1 cut(s) 171
PkrI GCNGC 2 cut(s) 147, 334
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 2 cut(s) 18, 127
PspPI GGNCC 2 cut(s) 17, 126
PstI CTGCAG 1 cut(s) 337
RsaI GTAC 2 cut(s) 246, 288
RsaNI GTAC 2 cut(s) 245, 287
SaqAI TTAA 2 cut(s) 158, 195
SatI GCNGC 2 cut(s) 146, 333
Sau96I GGNCC 2 cut(s) 17, 126
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 168
SetI ASST 5 cut(s) 45, 150, 227, 334, 352
SfcI CTRYAG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 4 cut(s) 10, 174, 214, 231
SseBI AGGCCT 1 cut(s) 171
SsiI CCGC 2 cut(s) 62, 113
StuI AGGCCT 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 1 cut(s) 227
TaqI TCGA 1 cut(s) 185
TasI AATT 4 cut(s) 10, 174, 214, 231
TatI WGTACW 1 cut(s) 244
Tru1I TTAA 2 cut(s) 158, 195
Tru9I TTAA 2 cut(s) 158, 195
TseI GCWGC 2 cut(s) 145, 332
Vha464I CTTAAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.