Rorug04G0168600

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0016567
Physical Location & Seq
Reverse (-)
29588200 .. 29590933
2734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0168600.1

Sequence Viewer

Length: 651 bp
ATGGTACCTGAGATTCTTGGCCCAATCGAGGATCGTCATGTCCCAACTACCCCAATTAGCACCACCAGCAAGCTCTTTTCTCCTCCTCCACCACCACCAGTCCACCACTACCAGACAGAATACGACGAGGAAGAAGCAGTCAAGTACAATGAACCGAAAAGGAAATCGGAGCTGCCCAAAGTCAAGTTCTGCCAAAAGGGTAAGATTTTAGGGTCAAGAATAACAAGGGATCTTTCACAGAGGTGTCGCCAGCTTCAGGCAGTTAGGATATCAAATTGTAAGGGTGCCACTGGTATTGGCTTTCAAGGTTGTTCCTCGACTTTAGCTTATGTAGAAGCTGAATCTTGCAAGCTTGCGCTAGAGGGCATTTCGGGAATCGTCAGTGGAGGTGGGATTGAATATTTGAACCTATCTGGTTTGATTTGGCGTAGTGGTGGAACTGGTTTGGGAACAATTGGAAGAGGGTTCGCCCTTAGGCTTAAGATTCTTAACCTCCGGATGTGTAGAACCGTTGGCGATGAGTCTATTGTAGCAATTGCGGAAGGTTGTCCACTACTTGAAGAATGGAACTTAGCACTGTGTCATGAGGTCAGGATAGTTGGGTGGTCTTCTATTGGGACAAACTGCAAAAGTTGGAAAAACTTCATGTGA

Protein Analysis

216

Amino Acids

23.66

Weight (kDa)

8.72

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G09970
fragaria_vesca FvH4_4g17210
malus_domestica MD00G1015100.v1.1
prunus_persica Prupe.8G046400_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0421111
rosa_laevigata RLG00000007712
rosa_multiflora Rmu_co8479425.1_g000001
rosa_roxburghii Rroxscaffold_5G00363430
rosa_rugosa Rorug04G0168600
rosa_samantha Rh4AG229400 Rh4BG232200 Rh4CG243800 Rh4DG227700
rosa_wichuraiana Rw4G020430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 2 cut(s) 4, 284
AccIII TCCGGA 1 cut(s) 495
AciI CCGC 1 cut(s) 539
AclWI GGATC 2 cut(s) 39, 237
AcuI CTGAAG 1 cut(s) 239
AfaI GTAC 2 cut(s) 6, 146
AfiI CCNNNNNNNGG 2 cut(s) 28, 256
AflII CTTAAG 1 cut(s) 479
AgsI TTSAA 4 cut(s) 305, 398, 406, 560
AjuI GAANNNNNNNTTGG 2 cut(s) 170, 202
AleI CACNNNNGTG 1 cut(s) 241
AluBI AGCT 6 cut(s) 73, 172, 253, 326, 338, 352
AluI AGCT 6 cut(s) 73, 172, 253, 326, 338, 352
AlwI GGATC 2 cut(s) 39, 237
Aor13HI TCCGGA 1 cut(s) 495
AoxI GGCC 1 cut(s) 19
ApeKI GCWGC 1 cut(s) 172
Asp700I GAANNNNTTC 1 cut(s) 641
Asp718I GGTACC 1 cut(s) 4
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 1 cut(s) 20
AxyI CCTNAGG 1 cut(s) 473
BanI GGYRCC 2 cut(s) 4, 284
BbsI GAAGAC 1 cut(s) 600
BbvI GCAGC 1 cut(s) 159
BfaI CTAG 1 cut(s) 359
BfrI CTTAAG 1 cut(s) 479
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 2 cut(s) 6, 286
BpiI GAAGAC 1 cut(s) 600
BsaWI WCCGGW 1 cut(s) 495
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 256
Bse1I ACTGG 3 cut(s) 98, 295, 445
Bse21I CCTNAGG 1 cut(s) 473
BseAI TCCGGA 1 cut(s) 495
BseGI GGATG 1 cut(s) 504
BseLI CCNNNNNNNGG 2 cut(s) 28, 256
BseNI ACTGG 3 cut(s) 98, 295, 445
BseRI GAGGAG 2 cut(s) 72, 75
BseXI GCAGC 1 cut(s) 159
BshFI GGCC 1 cut(s) 21
BshNI GGYRCC 2 cut(s) 4, 284
BsiSI CCGG 1 cut(s) 496
BslFI GGGAC 2 cut(s) 26, 631
BslI CCNNNNNNNGG 2 cut(s) 28, 256
BsmFI GGGAC 2 cut(s) 26, 631
BsnI GGCC 1 cut(s) 21
Bsp13I TCCGGA 1 cut(s) 495
Bsp143I GATC 2 cut(s) 31, 229
BspACI CCGC 1 cut(s) 539
BspANI GGCC 1 cut(s) 21
BspEI TCCGGA 1 cut(s) 495
BspHI TCATGA 1 cut(s) 583
BspLI GGNNCC 2 cut(s) 6, 286
BspPI GGATC 2 cut(s) 39, 237
BspT107I GGYRCC 2 cut(s) 4, 284
BspTI CTTAAG 1 cut(s) 479
BsrI ACTGG 3 cut(s) 98, 295, 445
BssMI GATC 2 cut(s) 31, 229
Bst4CI ACNGT 2 cut(s) 511, 579
Bst6I CTCTTC 1 cut(s) 454
BstAFI CTTAAG 1 cut(s) 479
BstC8I GCNNGC 4 cut(s) 71, 251, 350, 354
BstDEI CTNAG 3 cut(s) 9, 473, 571
BstF5I GGATG 1 cut(s) 504
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 2 cut(s) 34, 232
BstMBI GATC 2 cut(s) 31, 229
BstMWI GCNNNNNNNGC 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 159
BstV2I GAAGAC 1 cut(s) 600
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
Bsu36I CCTNAGG 1 cut(s) 473
BsuRI GGCC 1 cut(s) 21
BtgZI GCGATG 1 cut(s) 531
BtsCI GGATG 1 cut(s) 504
BtsIMutI CAGTG 3 cut(s) 288, 388, 575
Cac8I GCNNGC 4 cut(s) 71, 251, 350, 354
CciI TCATGA 1 cut(s) 583
CfoI GCGC 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 20
Csp6I GTAC 2 cut(s) 5, 145
CspCI CAANNNNNGTGG 2 cut(s) 277, 312
CviAII CATG 3 cut(s) 38, 584, 646
CviJI RGCY 9 cut(s) 21, 73, 172, 253, 300, 326, 338, 352, 478
CviKI_1 RGCY 9 cut(s) 21, 73, 172, 253, 300, 326, 338, 352, 478
CviQI GTAC 2 cut(s) 5, 145
DdeI CTNAG 3 cut(s) 9, 473, 571
DpnI GATC 2 cut(s) 33, 231
DpnII GATC 2 cut(s) 31, 229
Eam1104I CTCTTC 1 cut(s) 454
EarI CTCTTC 1 cut(s) 454
Eco32I GATATC 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 239
Eco81I CCTNAGG 1 cut(s) 473
EcoRV GATATC 1 cut(s) 270
FaeI CATG 3 cut(s) 41, 587, 649
FaiI YATR 4 cut(s) 39, 330, 585, 647
FaqI GGGAC 2 cut(s) 26, 631
FatI CATG 3 cut(s) 37, 583, 645
Fnu4HI GCNGC 1 cut(s) 173
FokI GGATG 1 cut(s) 511
Fsp4HI GCNGC 1 cut(s) 173
FspBI CTAG 1 cut(s) 359
GlaI GCGC 1 cut(s) 357
GluI GCNGC 1 cut(s) 173
HaeIII GGCC 1 cut(s) 21
HapII CCGG 1 cut(s) 496
HhaI GCGC 1 cut(s) 358
Hin1II CATG 3 cut(s) 41, 587, 649
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 5 cut(s) 13, 341, 375, 484, 521
HpaII CCGG 1 cut(s) 496
Hpy166II GTNNAC 2 cut(s) 103, 551
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 5 cut(s) 216, 372, 496, 584, 592
Hpy8I GTNNAC 2 cut(s) 103, 551
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 536
HpyCH4III ACNGT 2 cut(s) 511, 579
HpyCH4V TGCA 2 cut(s) 348, 627
HpyF10VI GCNNNNNNNGC 1 cut(s) 66
HpyF3I CTNAG 3 cut(s) 9, 473, 571
Hsp92II CATG 3 cut(s) 41, 587, 649
HspAI GCGC 1 cut(s) 356
Kpn2I TCCGGA 1 cut(s) 495
KpnI GGTACC 1 cut(s) 8
Kzo9I GATC 2 cut(s) 31, 229
LmnI GCTCC 1 cut(s) 169
Lsp1109I GCAGC 1 cut(s) 159
MaeI CTAG 1 cut(s) 359
MalI GATC 2 cut(s) 33, 231
MboI GATC 2 cut(s) 31, 229
MboII GAAGA 4 cut(s) 143, 471, 572, 600
MfeI CAATTG 2 cut(s) 453, 534
MflI RGATCY 1 cut(s) 229
MluCI AATT 4 cut(s) 54, 274, 453, 534
MlyI GAGTC 1 cut(s) 530
MmeI TCCRAC 1 cut(s) 614
MroI TCCGGA 1 cut(s) 495
MroXI GAANNNNTTC 1 cut(s) 641
MseI TTAA 2 cut(s) 480, 489
MslI CAYNNNNRTG 1 cut(s) 241
MspCI CTTAAG 1 cut(s) 479
MspI CCGG 1 cut(s) 496
MunI CAATTG 2 cut(s) 453, 534
MwoI GCNNNNNNNGC 1 cut(s) 66
NdeII GATC 2 cut(s) 31, 229
NlaIII CATG 3 cut(s) 41, 587, 649
NlaIV GGNNCC 2 cut(s) 6, 286
OliI CACNNNNGTG 1 cut(s) 241
PagI TCATGA 1 cut(s) 583
PdmI GAANNNNTTC 1 cut(s) 641
PfeI GAWTC 4 cut(s) 13, 341, 375, 484
PkrI GCNGC 1 cut(s) 174
PleI GAGTC 1 cut(s) 529
PpsI GAGTC 1 cut(s) 529
PspN4I GGNNCC 2 cut(s) 6, 286
PspPI GGNCC 1 cut(s) 20
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 2 cut(s) 6, 146
RsaNI GTAC 2 cut(s) 5, 145
RseI CAYNNNNRTG 1 cut(s) 241
SaqAI TTAA 2 cut(s) 480, 489
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 2 cut(s) 31, 229
Sau96I GGNCC 1 cut(s) 20
SchI GAGTC 1 cut(s) 530
SmiMI CAYNNNNRTG 1 cut(s) 241
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
Sse9I AATT 4 cut(s) 54, 274, 453, 534
SsiI CCGC 1 cut(s) 539
SspI AATATT 1 cut(s) 401
SspMI CTAG 1 cut(s) 359
TaaI ACNGT 2 cut(s) 511, 579
TaqI TCGA 2 cut(s) 27, 317
TasI AATT 4 cut(s) 54, 274, 453, 534
TatI WGTACW 1 cut(s) 144
TfiI GAWTC 4 cut(s) 13, 341, 375, 484
Tru1I TTAA 2 cut(s) 480, 489
Tru9I TTAA 2 cut(s) 480, 489
TscAI CASTG 3 cut(s) 295, 388, 582
TseI GCWGC 1 cut(s) 172
TspDTI ATGAA 2 cut(s) 165, 634
TspRI CASTG 3 cut(s) 295, 388, 582
Vha464I CTTAAG 1 cut(s) 479
XmnI GAANNNNTTC 1 cut(s) 641
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.