Rorug04G0180600

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0021394
Physical Location & Seq
Forward (+)
31637125 .. 31637607
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0180600.1

Sequence Viewer

Length: 483 bp
ATGGGTGTCTTCACTTATGAATCTGAGTTCACCTCTGTCATTCCACCAGCTAGGTTGTTCAAGGCCTTTGTCCTTGACGCCGACAACCTCATCCCTAAGATTGCTCCCCAAGCAGTTAAGAGTGCCGAGATTCTTGAAGGTGATGGAGGTGTTGGAACCATCAAGAAGATCAACCTCGGTGAAGGAAGTGAATACAGCTATGTGAAGCACCAGATTGACGGAATTGACAAAGACAACTTCGTGTACAAGTACAGCATGATTGAAGGAGATGCTATCTCAGACAAAATTGAGAAGATCTCCTATGAGACTAAGTTGGTGGCATCTTCCGATGGAGGCTCCATCATCAAGAGCACCAGCAACTACCACACCAAGGGTGACGTGGAGATCAAGGAAGAGCATGTTAAGGCTGGCAAAGAAAGGGCCGCCGGTTTGTTCAAGATTATTGAGAGCCACCTTCTAGCGAACCCTGATGTTTACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04014 map03460 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

160

Amino Acids

17.52

Weight (kDa)

5.24

Isoelectric Point (pI)

20.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 1 - 155 2e-26 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021394)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0417001 RchiOBHm_Chr4g0417771
rosa_laevigata RLG00000007931
rosa_rugosa Rorug04G0145800 Rorug04G0180600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 423
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 2 cut(s) 245, 251
AfiI CCNNNNNNNGG 1 cut(s) 370
AgsI TTSAA 4 cut(s) 61, 137, 263, 436
AjiI CACGTC 1 cut(s) 379
AluBI AGCT 2 cut(s) 50, 198
AluI AGCT 2 cut(s) 50, 198
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 1 cut(s) 299
AoxI GGCC 2 cut(s) 63, 420
AspS9I GGNCC 1 cut(s) 420
AsuHPI GGTGA 4 cut(s) 22, 152, 191, 386
Bbv12I GWGCWC 1 cut(s) 353
BccI CCATC 4 cut(s) 137, 167, 323, 347
BcoDI GTCTC 1 cut(s) 299
BfaI CTAG 2 cut(s) 51, 458
BglII AGATCT 1 cut(s) 294
BisI GCNGC 1 cut(s) 423
BlsI GCNGC 1 cut(s) 424
BmgBI CACGTC 1 cut(s) 379
BmgT120I GGNCC 1 cut(s) 420
BmiI GGNNCC 2 cut(s) 157, 337
BmsI GCATC 2 cut(s) 259, 329
BplI GAGNNNNNCTC 4 cut(s) 17, 49, 281, 313
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 175, 369
Bsc4I CCNNNNNNNGG 1 cut(s) 370
Bse118I RCCGGY 1 cut(s) 425
BseDI CCNNGG 2 cut(s) 175, 369
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 370
BseMII CTCAG 2 cut(s) 15, 291
BshFI GGCC 2 cut(s) 65, 422
BsiHKAI GWGCWC 1 cut(s) 353
BsiSI CCGG 1 cut(s) 426
BslI CCNNNNNNNGG 1 cut(s) 370
BsmAI GTCTC 1 cut(s) 299
BsnI GGCC 2 cut(s) 65, 422
Bsp1286I GDGCHC 1 cut(s) 353
Bsp1407I TGTACA 1 cut(s) 243
Bsp143I GATC 3 cut(s) 168, 294, 384
BspACI CCGC 1 cut(s) 423
BspANI GGCC 2 cut(s) 65, 422
BspCNI CTCAG 2 cut(s) 16, 290
BspLI GGNNCC 2 cut(s) 157, 337
BspQI GCTCTTC 1 cut(s) 387
BsrFI RCCGGY 1 cut(s) 425
BsrGI TGTACA 1 cut(s) 243
BssAI RCCGGY 1 cut(s) 425
BssECI CCNNGG 2 cut(s) 175, 369
BssMI GATC 3 cut(s) 168, 294, 384
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 369
Bst6I CTCTTC 1 cut(s) 387
BstACI GRCGYC 1 cut(s) 78
BstAUI TGTACA 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 4 cut(s) 24, 96, 277, 309
BstF5I GGATG 1 cut(s) 90
BstKTI GATC 3 cut(s) 171, 297, 387
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 3 cut(s) 168, 294, 384
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 401
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BsuRI GGCC 2 cut(s) 65, 422
BtrI CACGTC 1 cut(s) 379
BtsCI GGATG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 409
Cfr10I RCCGGY 1 cut(s) 425
Cfr13I GGNCC 1 cut(s) 420
CseI GACGC 1 cut(s) 86
Csp6I GTAC 2 cut(s) 244, 250
CviAII CATG 2 cut(s) 256, 398
CviJI RGCY 7 cut(s) 50, 65, 198, 336, 407, 422, 450
CviKI_1 RGCY 7 cut(s) 50, 65, 198, 336, 407, 422, 450
CviQI GTAC 2 cut(s) 244, 250
DdeI CTNAG 4 cut(s) 24, 96, 277, 309
DpnI GATC 3 cut(s) 170, 296, 386
DpnII GATC 3 cut(s) 168, 294, 384
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 369
Eco147I AGGCCT 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 2 cut(s) 259, 401
FaiI YATR 5 cut(s) 18, 201, 257, 303, 399
FatI CATG 2 cut(s) 255, 397
Fnu4HI GCNGC 1 cut(s) 423
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 423
FspBI CTAG 2 cut(s) 51, 458
GluI GCNGC 1 cut(s) 423
HaeIII GGCC 2 cut(s) 65, 422
HapII CCGG 1 cut(s) 426
HgaI GACGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 259, 401
HinfI GANTC 2 cut(s) 20, 130
HpaII CCGG 1 cut(s) 426
HphI GGTGA 4 cut(s) 22, 152, 191, 386
Hpy166II GTNNAC 3 cut(s) 30, 244, 475
Hpy188I TCNGA 3 cut(s) 25, 280, 328
Hpy188III TCNNGA 4 cut(s) 134, 163, 346, 436
Hpy8I GTNNAC 3 cut(s) 30, 244, 475
HpyAV CCTTC 4 cut(s) 131, 176, 257, 464
HpyCH4IV ACGT 1 cut(s) 378
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 4 cut(s) 24, 96, 277, 309
HpySE526I ACGT 1 cut(s) 378
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 259, 401
Kzo9I GATC 3 cut(s) 168, 294, 384
LguI GCTCTTC 1 cut(s) 387
LmnI GCTCC 2 cut(s) 109, 341
LpnPI CCDG 5 cut(s) 60, 224, 367, 393, 439
LweI GCATC 2 cut(s) 259, 329
MaeI CTAG 2 cut(s) 51, 458
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 1 cut(s) 374
MalI GATC 3 cut(s) 170, 296, 386
MboI GATC 3 cut(s) 168, 294, 384
MboII GAAGA 4 cut(s) 178, 304, 315, 404
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 2 cut(s) 222, 285
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 5 cut(s) 43, 98, 140, 185, 326
MseI TTAA 2 cut(s) 117, 402
MspI CCGG 1 cut(s) 426
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 3 cut(s) 168, 294, 384
NlaIII CATG 2 cut(s) 259, 401
NlaIV GGNNCC 2 cut(s) 157, 337
NmeAIII GCCGAG 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 374
NspI RCATGY 1 cut(s) 401
PceI AGGCCT 1 cut(s) 65
PciSI GCTCTTC 1 cut(s) 387
PfeI GAWTC 2 cut(s) 20, 130
PkrI GCNGC 1 cut(s) 424
PspN4I GGNNCC 2 cut(s) 157, 337
PspPI GGNCC 1 cut(s) 420
PsuI RGATCY 1 cut(s) 294
RsaI GTAC 2 cut(s) 245, 251
RsaNI GTAC 2 cut(s) 244, 250
SapI GCTCTTC 1 cut(s) 387
SaqAI TTAA 2 cut(s) 117, 402
SatI GCNGC 1 cut(s) 423
Sau3AI GATC 3 cut(s) 168, 294, 384
Sau96I GGNCC 1 cut(s) 420
SduI GDGCHC 1 cut(s) 353
SfaNI GCATC 2 cut(s) 259, 329
Sse9I AATT 2 cut(s) 222, 285
SseBI AGGCCT 1 cut(s) 65
SsiI CCGC 1 cut(s) 423
SspMI CTAG 2 cut(s) 51, 458
StuI AGGCCT 1 cut(s) 65
StyI CCWWGG 1 cut(s) 369
TaiI ACGT 1 cut(s) 381
TasI AATT 2 cut(s) 222, 285
TatI WGTACW 2 cut(s) 243, 249
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 2 cut(s) 20, 130
Tru1I TTAA 2 cut(s) 117, 402
Tru9I TTAA 2 cut(s) 117, 402
TseFI GTSAC 1 cut(s) 374
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 1 cut(s) 33
TspGWI ACGGA 1 cut(s) 234
XceI RCATGY 1 cut(s) 401
XcmI CCANNNNNNNNNTGG 1 cut(s) 376
XspI CTAG 2 cut(s) 51, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.