Rorug04G0145800

Belongs to the universal ribosomal protein uS9 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001512
Physical Location & Seq
Forward (+)
24115644 .. 24128280
12637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0145800.1

Sequence Viewer

Length: 3633 bp
ATGGGCATGATAGATAGTGGAAGCATGGAGCAGTCACACAAGGCACACAGGTCCCGGCAGTCGGGTTCCAAGGCCGATAAGAAGAAGCCCCAAAAAGATTCGAAGAAGAAGCAAAACCCCAAGGCATTCGCTTTCAGCTCAACTGTCAAAGCCAAGCGTCTCCAGTCTCGTGCCGTCGAGAAAGAGCAGCGACGACTTCATGTTCCGACCATTGATCGCTCCTACGGCGAACAGCCTCCTTTTGTTGTTCTTGTCCATGGACCTCCCAAGGTTGGCAAGTCTTTGTTGATCAAGTCCCTTGTAAAGCATTATACCAAACATGATTTACGGGAGGTTAAAGGCCCGATTACCATAGTAACAGGGAAGCAGAGGCGGGTTCAGTTTGTGGAGTGCCCCGATGATATCAATGCCATGATTGATGCCGCCAAATTTGCTGATTTAGCATTGCTTCTTATAGATGGAAGCTATGGTTTTGAAATGGAAACATTTGAGTTCCTTAATATATTGCAAGTCCATGGCTTCCCAAAGGTCATGGGAGTTCTCACTCACCTTGATAAGTTCAAAGATGCAAAGAAGCTGAGGAAAACAAAGCAGCATTTAAAACATCGGTTCTGGACTGAAATATATGATGGAGCTAAATTGTTTTATTTATCAGGTCTTATTCATGAAAAGTATGTCAAACGTGAGATTCACAATCTGGCTCGTTTCATATCTGTTATGAAGTTCCATCCTTTATCTTGGAGAACTGCTCATCCTTATGTTCTAGTAGATCGTTTTGAAGATATCACTCCCCCTGAAAAAATGCGGTTGAATAATAAATGTGATAGAAATGTCACACTTTATGGTTATTTGCGGGGGTGTAACATGAAAAAAGGAACAAAGATTCATATTGCAGGTGTTGGTGATTACAGTGTCGCTGGTATGACAGGCTTAGCTGATCCGTGTCCTTTACCCTCAGCTGCCAAAAAGAAGGGGCTGCGTGATAAAGAAAAATTGTTTTATGCACCTATGTCTGGACTTGGGGATCTCATGTATGACAAAGATGCTGTCTATATAAATATAAATGATCACTTTGTTCAGTTTTCAAACCAGGATGAAAAGGGGGAAGCAACGAACAAAGGAGAGCTTGAGGATGTGGGTGTGACCATGGTTAAAAGTCTTCAAAACCCAAAATATTCGCTTGATGAAAAGTTGGAGCAGAGCTTCATTAACTTTTATATCCAGAAACCTAAATTGGAATCTCAACATGATGAAAAAGATCTTGATGAGTCCAGAAAACGCATTCGTATGATAGAGCCTTTAGAGGAACATCAGTTTGGGGGAACAATGAAAGCTGGGGGTTCTGGTCAAGAAAGTAATGTTGAGGATATTGATGGCTCAGAATCAAAATCTTATCAGAATGATGCTCGTAATGTAGCAATAACAAAAAGTTATTCTAGTGGATCTGATAGGGAAAATGGTGATGTATCAGATCAAGATGTTAACCTTAAAGATCACTTGAAGGAACATGTTGAGTTTCATGATGGAAGGTCAAGGAGAAAAGTTATCTTTGAAAATGACCTTAATCCTACTGATATGGAGGATTCAGAAGAGGAGTCAGAAGATGATGACGACGGTGGTGATAATGATGCAGAAAATCATACCTCTTCTGGTTCAGAGTCTTCAGAGGAAGATAGAGAAATTCATGAGACAGATGATGATGAGGGAAATATAGCAAAGTGGAAAGAGTCTTTGGCAGAACGGACATTTTCGAGACAAACTACTAACCTTATGCAACTTGTATATGGGAAATCTTCATCGGTTTCAACTAAAGCCAATGAAGAACAAGACAGTAGTGATGAGGACAGTGATGGAGATGACTTTTTTAAGCCAAAAGGAGACGGAATTAAGAAACATAGAGTAGAAGATGGAAATTGGAATGTCGAGGACTCTTCCAAATTTACAAATCACTCAATCAAAGACTGGAATGATAAAAAGCTTATAGAGAGTGTGCGCGATCGCTTTGTCACTGGTGATTGGTCAAAGGCTGCTAAAAGAAATCAAGACACAGAGGCCACATGTGAAGATGAAGATGCTGTCTTTGGTGACTTTGAAGATATAGAAACAGGTGAGAAGCATGATGGATATCATACAAAGGAGACAAGAAAATTTGCGAACAACAAGAAAGCTGGCTTAGATGAAGAGGAGGGGCGGAGGCTCAAAAAGCTTGCTCTTCGTGCCAAGTTTGATGCTCAATATGATGAACCTGATACAAGTGAGGAGGAACCTGATGATACACATGTAAGCCAGTTTGGTCGAGCTAAAGAAAGCGGCTATGTTGACAAGCTGAAGGAGGAGATTGAACTCCGGAAACAAATGAATATAGCTGAACTCAATGACCTTGATGAGGACACCCGCTTAGAGGTCGAGGGTTTCCGGACAGGGACTTACCTTCGGTTGGAAGTTCATGATGTTCCTTATGAGATGGTTGAATATTTTAATCCCTGCCATCCTGTTTTGGTTGGAGGAATTGGTCTTGGGGAAGAAAGCACCGGATACATGCAGGCCAGGTTAAAGCGGCATAGATGGCACAAGAAAGTGCTAAAGACCAGTGACCCCATCATTGTATCTATTGGGTGGAGGCGTTACCAAACAATTCCGGTTTATGCCATTGAAGATTGCAATGGAAGGCATCGCATGCTTAAGTACACTCCAGAACACATGCATTGCCTTGCAATGTTTTGGGGCCCTCTTGCCCCTCCCAATACTGGTGTGGTTGCTTTCCAGAATTTGTCAAACAATCAGGCAACATTTAGGATCACCGCCACGGCAGTTGTGCTTGAGTTCAACCATGCATCCCGAATAGTGAAGAAACTTAAACTAGTTGGTTATCCTTGCAAGATATTCAAGAATACAGCACTTATAAAAGATATGTTTACCTCAGATCTTGAAATAGCTCGATTTGAAGGTGCTTCTGTTCGAACAGTCAGTGGCATCCGGGGCCAGGTGAAAAAGGCTGCAAAAGAAGAAATTGGTAACCAACTGAAAAAGAAGGGTGGACAACCAAAAGAGGGAATTGTTAGGTGCACCTTTGAGGACAAAATTAAGATGAGTGACATTGTGTTTTTGCGCGCTTGGACTCAAGTTGATGTTCCTTGCTTTTACAACCCATTAACCACATCTCTGCAACCCCGTGATGTGACCTGGCGAGGGATGAAAACTGTAGCTGAGTTGAGGAGAGAGCGCAATATTCCTATTCCTGTTAACAAAGATTCACTCTACAAGCCAATTGAAAGGAAGCAGAGGAAGTTCAACCCACTGGTGATTCCCAAAGCAGTACAAGCAAGTCTTCCATTTAAATCAAAGCCTAAGGATACACCGAATAGAAGAAAGCAACTTCTTGAAGATAGAAGAGCTGTTGTGAGGGAGCCTCATGAACAGAAAATTCATGCTCTGCTTCAAAATCTTCGGTTAATAAAATCTGAGAAGTTAAAGAAGCGCAAGATAAAGGATGAGAAAAAAAGAAAAGAAATTGAAGCACAGAAAGCCAAAGATGAGCAGTTGTCAAGAAAGCGCCAGAGAGAAGAACGACGAGAGAGATACCGGGTGCAAGACAAAGCTCAGAAGAAAATGAGGAGACATGCGGAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S9

Protein Analysis

1210

Amino Acids

139.1

Weight (kDa)

8.68

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AARP2CN PF08142 241 - 314 4.1e-26 AARP2CN (NUC121) domain
RIBIOP_C PF04950 728 - 1043 2.2e-85 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2903
AarI CACCTGC 1 cut(s) 884
Acc36I ACCTGC 1 cut(s) 884
AccII CGCG 2 cut(s) 1995, 3111
AccIII TCCGGA 2 cut(s) 2346, 2415
AclWI GGATC 4 cut(s) 932, 1032, 1450, 2804
AcsI RAATTY 6 cut(s) 428, 1680, 1937, 2147, 2767, 3423
AcuI CTGAAG 2 cut(s) 1647, 2348
AfaI GTAC 2 cut(s) 2687, 3318
AflII CTTAAG 1 cut(s) 2681
AflIII ACRYGT 3 cut(s) 1507, 2057, 2278
AhlI ACTAGT 1 cut(s) 2860
AjnI CCWGG 4 cut(s) 1089, 2546, 2982, 3182
AjuI GAANNNNNNNTTGG 6 cut(s) 1217, 1249, 1299, 1331, 1715, 1747
AloI GAACNNNNNNTCC 2 cut(s) 736, 768
Alw21I GWGCWC 1 cut(s) 3068
Alw26I GTCTC 7 cut(s) 164, 171, 1682, 1747, 1872, 2132, 3610
Alw44I GTGCAC 1 cut(s) 3064
AlwI GGATC 4 cut(s) 932, 1032, 1450, 2804
Aor13HI TCCGGA 2 cut(s) 2346, 2415
AoxI GGCC 6 cut(s) 72, 340, 2052, 2544, 2725, 2980
ApaI GGGCCC 1 cut(s) 2729
ApaLI GTGCAC 1 cut(s) 3064
ApeKI GCWGC 6 cut(s) 187, 592, 959, 976, 2027, 2996
ApoI RAATTY 6 cut(s) 428, 1680, 1937, 2147, 2767, 3423
ArsI GACNNNNNNTTYG 2 cut(s) 1032, 1064
AsiSI GCGATCGC 1 cut(s) 1999
AspLEI GCGC 6 cut(s) 1995, 3111, 3113, 3225, 3480, 3555
AspS9I GGNCC 6 cut(s) 51, 260, 341, 2725, 2726, 2980
AsuC2I CCSGG 3 cut(s) 55, 2978, 3584
AsuII TTCGAA 2 cut(s) 101, 2959
AvaII GGWCC 2 cut(s) 51, 260
AxyI CCTNAGG 1 cut(s) 3348
BaeGI GKGCMC 3 cut(s) 395, 2729, 3068
BaeI ACNNNNGTAYC 2 cut(s) 2265, 2298
BanII GRGCYC 1 cut(s) 2729
BauI CACGAG 1 cut(s) 168
BbsI GAAGAC 3 cut(s) 1151, 1653, 3320
Bbv12I GWGCWC 1 cut(s) 3068
BbvCI CCTCAGC 2 cut(s) 578, 955
BbvI GCAGC 6 cut(s) 199, 604, 946, 963, 2014, 2983
BceAI ACGGC 3 cut(s) 158, 241, 2823
BciT130I CCWGG 4 cut(s) 1091, 2548, 2984, 3184
BciVI GTATCC 2 cut(s) 2528, 3346
BclI TGATCA 2 cut(s) 288, 1066
BcnI CCSGG 3 cut(s) 55, 2978, 3584
BcoDI GTCTC 7 cut(s) 164, 171, 1682, 1747, 1872, 2132, 3610
BcuI ACTAGT 1 cut(s) 2860
BfaI CTAG 3 cut(s) 764, 1437, 2861
BfmI CTRYAG 1 cut(s) 3201
BfoI RGCGCY 1 cut(s) 3556
BfrI CTTAAG 1 cut(s) 2681
BfuAI ACCTGC 1 cut(s) 884
BfuI GTATCC 2 cut(s) 2528, 3346
BglII AGATCT 2 cut(s) 1258, 2923
BisI GCNGC 9 cut(s) 188, 423, 593, 960, 977, 2028, 2311, 2558, 2997
BlpI GCTNAGC 1 cut(s) 931
BlsI GCNGC 9 cut(s) 189, 424, 594, 961, 978, 2029, 2312, 2559, 2998
Bme1390I CCNGG 7 cut(s) 55, 1091, 2548, 2978, 2984, 3184, 3584
Bme18I GGWCC 2 cut(s) 51, 260
BmgT120I GGNCC 6 cut(s) 51, 260, 341, 2725, 2726, 2980
BmiI GGNNCC 7 cut(s) 53, 67, 2265, 2726, 2727, 2981, 3408
BmrFI CCNGG 7 cut(s) 55, 1091, 2548, 2978, 2984, 3184, 3584
BpiI GAAGAC 3 cut(s) 1151, 1653, 3320
BplI GAGNNNNNCTC 4 cut(s) 733, 765, 3394, 3426
BpmI CTGGAG 2 cut(s) 146, 2676
Bpu10I CCTNAGC 2 cut(s) 578, 955
Bpu1102I GCTNAGC 1 cut(s) 931
Bpu14I TTCGAA 2 cut(s) 101, 2959
BpuEI CTTGAG 3 cut(s) 1148, 2840, 3105
BpuMI CCSGG 3 cut(s) 55, 2978, 3584
BsaBI GATNNNNATC 1 cut(s) 2124
BsaJI CCNNGG 8 cut(s) 69, 120, 256, 267, 514, 1146, 2805, 2977
BsaWI WCCGGW 4 cut(s) 2346, 2415, 2531, 2638
Bse1I ACTGG 7 cut(s) 163, 1967, 2014, 2287, 2589, 2752, 3303
Bse21I CCTNAGG 1 cut(s) 3348
Bse3DI GCAATG 4 cut(s) 443, 2668, 2704, 2721
Bse8I GATNNNNATC 1 cut(s) 2124
BseAI TCCGGA 2 cut(s) 2346, 2415
BseBI CCWGG 4 cut(s) 1091, 2548, 2984, 3184
BseDI CCNNGG 8 cut(s) 69, 120, 256, 267, 514, 1146, 2805, 2977
BseGI GGATG 9 cut(s) 727, 751, 1099, 1138, 2488, 2834, 2973, 3198, 3496
BseJI GATNNNNATC 1 cut(s) 2124
BseMI GCAATG 4 cut(s) 443, 2668, 2704, 2721
BseMII CTCAG 7 cut(s) 569, 969, 1392, 2934, 3198, 3453, 3614
BseNI ACTGG 7 cut(s) 163, 1967, 2014, 2287, 2589, 2752, 3303
BsePI GCGCGC 1 cut(s) 3109
BseRI GAGGAG 6 cut(s) 1607, 2198, 2273, 2348, 3229, 3628
BseSI GKGCMC 3 cut(s) 395, 2729, 3068
BseXI GCAGC 6 cut(s) 199, 604, 946, 963, 2014, 2983
BseYI CCCAGC 1 cut(s) 1334
Bsh1236I CGCG 2 cut(s) 1995, 3111
Bsh1285I CGRYCG 1 cut(s) 1999
BshFI GGCC 6 cut(s) 74, 342, 2054, 2546, 2727, 2982
BsiEI CGRYCG 1 cut(s) 1999
BsiHKAI GWGCWC 1 cut(s) 3068
BsiSI CCGG 7 cut(s) 55, 2347, 2416, 2532, 2639, 2977, 3583
BslFI GGGAC 3 cut(s) 37, 280, 2437
BsmAI GTCTC 7 cut(s) 164, 171, 1682, 1747, 1872, 2132, 3610
BsmBI CGTCTC 2 cut(s) 164, 1872
BsmFI GGGAC 3 cut(s) 37, 280, 2437
BsmI GAATGC 2 cut(s) 125, 1281
BsnI GGCC 6 cut(s) 74, 342, 2054, 2546, 2727, 2982
Bsp119I TTCGAA 2 cut(s) 101, 2959
Bsp120I GGGCCC 1 cut(s) 2725
Bsp1286I GDGCHC 3 cut(s) 395, 2729, 3068
Bsp13I TCCGGA 2 cut(s) 2346, 2415
Bsp1720I GCTNAGC 1 cut(s) 931
Bsp19I CCATGG 3 cut(s) 256, 514, 1146
BspANI GGCC 6 cut(s) 74, 342, 2054, 2546, 2727, 2982
BspCNI CTCAG 7 cut(s) 570, 968, 1391, 2933, 3199, 3454, 3613
BspEI TCCGGA 2 cut(s) 2346, 2415
BspFNI CGCG 2 cut(s) 1995, 3111
BspHI TCATGA 5 cut(s) 664, 1519, 1684, 2446, 3412
BspLI GGNNCC 7 cut(s) 53, 67, 2265, 2726, 2727, 2981, 3408
BspMI ACCTGC 1 cut(s) 884
BspPI GGATC 4 cut(s) 932, 1032, 1450, 2804
BspQI GCTCTTC 2 cut(s) 2217, 3385
BspT104I TTCGAA 2 cut(s) 101, 2959
BspTI CTTAAG 1 cut(s) 2681
BsrDI GCAATG 4 cut(s) 443, 2668, 2704, 2721
BsrI ACTGG 7 cut(s) 163, 1967, 2014, 2287, 2589, 2752, 3303
BssECI CCNNGG 8 cut(s) 69, 120, 256, 267, 514, 1146, 2805, 2977
BssHII GCGCGC 1 cut(s) 3109
BssSI CACGAG 1 cut(s) 168
BssT1I CCWWGG 6 cut(s) 69, 120, 256, 267, 514, 1146
Bst2BI CACGAG 1 cut(s) 168
Bst2UI CCWGG 4 cut(s) 1091, 2548, 2984, 3184
Bst4CI ACNGT 7 cut(s) 145, 911, 1616, 1832, 1847, 2965, 3202
Bst6I CTCTTC 6 cut(s) 1584, 1651, 1936, 2175, 2217, 3385
BstAFI CTTAAG 1 cut(s) 2681
BstAPI GCANNNNNTGC 1 cut(s) 2677
BstBI TTCGAA 2 cut(s) 101, 2959
BstC8I GCNNGC 5 cut(s) 2170, 2208, 2544, 2678, 3111
BstDSI CCRYGG 4 cut(s) 256, 514, 1146, 2805
BstEII GGTNACC 1 cut(s) 3014
BstENI CCTNNNNNAGG 1 cut(s) 2384
BstF5I GGATG 9 cut(s) 727, 751, 1099, 1138, 2488, 2834, 2973, 3198, 3496
BstFNI CGCG 2 cut(s) 1995, 3111
BstH2I RGCGCY 1 cut(s) 3556
BstHHI GCGC 6 cut(s) 1995, 3111, 3113, 3225, 3480, 3555
BstMAI GTCTC 7 cut(s) 164, 171, 1682, 1747, 1872, 2132, 3610
BstMCI CGRYCG 1 cut(s) 1999
BstNI CCWGG 4 cut(s) 1091, 2548, 2984, 3184
BstNSI RCATGY 7 cut(s) 1511, 2061, 2282, 2542, 2680, 2704, 3623
BstPI GGTNACC 1 cut(s) 3014
BstSCI CCNGG 7 cut(s) 53, 1089, 2546, 2976, 2982, 3182, 3582
BstSFI CTRYAG 1 cut(s) 3201
BstSLI GKGCMC 3 cut(s) 395, 2729, 3068
BstUI CGCG 2 cut(s) 1995, 3111
BstV1I GCAGC 6 cut(s) 199, 604, 946, 963, 2014, 2983
BstV2I GAAGAC 3 cut(s) 1151, 1653, 3320
BstX2I RGATCY 4 cut(s) 1024, 1258, 1442, 2923
BstYI RGATCY 4 cut(s) 1024, 1258, 1442, 2923
Bsu36I CCTNAGG 1 cut(s) 3348
BsuI GTATCC 2 cut(s) 2528, 3346
BsuRI GGCC 6 cut(s) 74, 342, 2054, 2546, 2727, 2982
BtgI CCRYGG 4 cut(s) 256, 514, 1146, 2805
BtgZI GCGATG 1 cut(s) 2657
BtsCI GGATG 9 cut(s) 727, 751, 1099, 1138, 2488, 2834, 2973, 3198, 3496
BtsIMutI CAGTG 6 cut(s) 916, 1852, 2007, 2596, 2974, 3296
BveI ACCTGC 1 cut(s) 884
Cac8I GCNNGC 5 cut(s) 2170, 2208, 2544, 2678, 3111
CciI TCATGA 5 cut(s) 664, 1519, 1684, 2446, 3412
CfoI GCGC 6 cut(s) 1995, 3111, 3113, 3225, 3480, 3555
Cfr13I GGNCC 6 cut(s) 51, 260, 341, 2725, 2726, 2980
CseI GACGC 1 cut(s) 146
Csp6I GTAC 2 cut(s) 2686, 3317
CspCI CAANNNNNGTGG 2 cut(s) 2794, 2829
CviQI GTAC 2 cut(s) 2686, 3317
DraI TTTAAA 2 cut(s) 600, 3337
Eam1104I CTCTTC 6 cut(s) 1584, 1651, 1936, 2175, 2217, 3385
EarI CTCTTC 6 cut(s) 1584, 1651, 1936, 2175, 2217, 3385
EciI GGCGGA 1 cut(s) 2206
Eco130I CCWWGG 6 cut(s) 69, 120, 256, 267, 514, 1146
Eco24I GRGCYC 1 cut(s) 2729
Eco32I GATATC 3 cut(s) 403, 784, 2126
Eco47I GGWCC 2 cut(s) 51, 260
Eco57I CTGAAG 2 cut(s) 1647, 2348
Eco81I CCTNAGG 1 cut(s) 3348
Eco91I GGTNACC 1 cut(s) 3014
EcoNI CCTNNNNNAGG 1 cut(s) 2384
EcoO109I RGGNCCY 3 cut(s) 51, 2725, 2726
EcoO65I GGTNACC 1 cut(s) 3014
EcoRII CCWGG 4 cut(s) 1089, 2546, 2982, 3182
EcoRV GATATC 3 cut(s) 403, 784, 2126
EcoT14I CCWWGG 6 cut(s) 69, 120, 256, 267, 514, 1146
EcoT22I ATGCAT 2 cut(s) 2706, 2836
EcoT38I GRGCYC 1 cut(s) 2729
ErhI CCWWGG 6 cut(s) 69, 120, 256, 267, 514, 1146
Esp3I CGTCTC 2 cut(s) 164, 1872
FalI AAGNNNNNCTT 4 cut(s) 1110, 1142, 3312, 3344
FaqI GGGAC 3 cut(s) 37, 280, 2437
FauI CCCGC 3 cut(s) 366, 846, 2402
FbaI TGATCA 2 cut(s) 288, 1066
Fnu4HI GCNGC 9 cut(s) 188, 423, 593, 960, 977, 2028, 2311, 2558, 2997
FokI GGATG 9 cut(s) 714, 738, 1106, 1145, 2475, 2821, 2960, 3205, 3503
FriOI GRGCYC 1 cut(s) 2729
Fsp4HI GCNGC 9 cut(s) 188, 423, 593, 960, 977, 2028, 2311, 2558, 2997
FspBI CTAG 3 cut(s) 764, 1437, 2861
GlaI GCGC 6 cut(s) 1994, 3110, 3112, 3224, 3479, 3554
GluI GCNGC 9 cut(s) 188, 423, 593, 960, 977, 2028, 2311, 2558, 2997
GsaI CCCAGC 1 cut(s) 1338
GsuI CTGGAG 2 cut(s) 146, 2676
HaeII RGCGCY 1 cut(s) 3556
HaeIII GGCC 6 cut(s) 74, 342, 2054, 2546, 2727, 2982
HapII CCGG 7 cut(s) 55, 2347, 2416, 2532, 2639, 2977, 3583
HgaI GACGC 1 cut(s) 146
HhaI GCGC 6 cut(s) 1995, 3111, 3113, 3225, 3480, 3555
Hin6I GCGC 6 cut(s) 1993, 3109, 3111, 3223, 3478, 3553
HinP1I GCGC 6 cut(s) 1993, 3109, 3111, 3223, 3478, 3553
HincII GTYRAC 3 cut(s) 1483, 2320, 3244
HindII GTYRAC 3 cut(s) 1483, 2320, 3244
HindIII AAGCTT 2 cut(s) 1976, 2204
HpaI GTTAAC 2 cut(s) 1483, 3244
HpaII CCGG 7 cut(s) 55, 2347, 2416, 2532, 2639, 2977, 3583
Hpy166II GTNNAC 7 cut(s) 1483, 2320, 2688, 2916, 3038, 3066, 3244
Hpy8I GTNNAC 7 cut(s) 1483, 2320, 2688, 2916, 3038, 3066, 3244
Hpy99I CGWCG 4 cut(s) 179, 195, 1616, 3573
HpyAV CCTTC 8 cut(s) 964, 1495, 1521, 2323, 2441, 2661, 2939, 3025
HpyCH4III ACNGT 7 cut(s) 145, 911, 1616, 1832, 1847, 2965, 3202
HpyCH4IV ACGT 1 cut(s) 682
HpySE526I ACGT 1 cut(s) 682
HspAI GCGC 6 cut(s) 1993, 3109, 3111, 3223, 3478, 3553
Kpn2I TCCGGA 2 cut(s) 2346, 2415
Ksp22I TGATCA 2 cut(s) 288, 1066
KspAI GTTAAC 2 cut(s) 1483, 3244
LguI GCTCTTC 2 cut(s) 2217, 3385
LmnI GCTCC 5 cut(s) 28, 224, 632, 1195, 3406
Lsp1109I GCAGC 6 cut(s) 199, 604, 946, 963, 2014, 2983
MaeI CTAG 3 cut(s) 764, 1437, 2861
MaeII ACGT 1 cut(s) 682
MfeI CAATTG 1 cut(s) 3267
MflI RGATCY 4 cut(s) 1024, 1258, 1442, 2923
MhlI GDGCHC 3 cut(s) 395, 2729, 3068
MlyI GAGTC 6 cut(s) 1277, 1604, 1667, 1736, 1922, 3112
MmeI TCCRAC 4 cut(s) 230, 1173, 2418, 2482
Mph1103I ATGCAT 2 cut(s) 2706, 2836
MroI TCCGGA 2 cut(s) 2346, 2415
MslI CAYNNNNRTG 2 cut(s) 756, 1286
MspA1I CMGCKG 1 cut(s) 959
MspCI CTTAAG 1 cut(s) 2681
MspI CCGG 7 cut(s) 55, 2347, 2416, 2532, 2639, 2977, 3583
MspR9I CCNGG 7 cut(s) 55, 1091, 2548, 2978, 2984, 3184, 3584
MunI CAATTG 1 cut(s) 3267
Mva1269I GAATGC 2 cut(s) 125, 1281
MvaI CCWGG 4 cut(s) 1091, 2548, 2984, 3184
MvnI CGCG 2 cut(s) 1995, 3111
NciI CCSGG 3 cut(s) 55, 2978, 3584
NcoI CCATGG 3 cut(s) 256, 514, 1146
NlaIV GGNNCC 7 cut(s) 53, 67, 2265, 2726, 2727, 2981, 3408
NmuCI GTSAC 8 cut(s) 33, 832, 1141, 2005, 2084, 2591, 3092, 3178
NsiI ATGCAT 2 cut(s) 2706, 2836
NspI RCATGY 7 cut(s) 1511, 2061, 2282, 2542, 2680, 2704, 3623
NspV TTCGAA 2 cut(s) 101, 2959
PaeI GCATGC 1 cut(s) 2680
PagI TCATGA 5 cut(s) 664, 1519, 1684, 2446, 3412
PaqCI CACCTGC 1 cut(s) 884
PauI GCGCGC 1 cut(s) 3109
PciI ACATGT 3 cut(s) 1507, 2057, 2278
PciSI GCTCTTC 2 cut(s) 2217, 3385
PctI GAATGC 2 cut(s) 125, 1281
PfeI GAWTC 8 cut(s) 98, 688, 883, 1238, 1382, 1583, 3251, 3304
PkrI GCNGC 9 cut(s) 189, 424, 594, 961, 978, 2029, 2312, 2559, 2998
Ple19I CGATCG 1 cut(s) 1999
PleI GAGTC 6 cut(s) 1276, 1603, 1666, 1735, 1922, 3112
PpsI GAGTC 6 cut(s) 1276, 1603, 1666, 1735, 1922, 3112
PpuMI RGGWCCY 1 cut(s) 51
PscI ACATGT 3 cut(s) 1507, 2057, 2278
PsiI TTATAA 1 cut(s) 2903
Psp5II RGGWCCY 1 cut(s) 51
Psp6I CCWGG 4 cut(s) 1089, 2546, 2982, 3182
PspEI GGTNACC 1 cut(s) 3014
PspFI CCCAGC 1 cut(s) 1334
PspGI CCWGG 4 cut(s) 1089, 2546, 2982, 3182
PspN4I GGNNCC 7 cut(s) 53, 67, 2265, 2726, 2727, 2981, 3408
PspOMI GGGCCC 1 cut(s) 2725
PspPI GGNCC 6 cut(s) 51, 260, 341, 2725, 2726, 2980
PspPPI RGGWCCY 1 cut(s) 51
PsuI RGATCY 4 cut(s) 1024, 1258, 1442, 2923
PteI GCGCGC 1 cut(s) 3109
PvuI CGATCG 1 cut(s) 1999
PvuII CAGCTG 1 cut(s) 959
RgaI GCGATCGC 1 cut(s) 1999
RsaI GTAC 2 cut(s) 2687, 3318
RsaNI GTAC 2 cut(s) 2686, 3317
RseI CAYNNNNRTG 2 cut(s) 756, 1286
SapI GCTCTTC 2 cut(s) 2217, 3385
SatI GCNGC 9 cut(s) 188, 423, 593, 960, 977, 2028, 2311, 2558, 2997
Sau96I GGNCC 6 cut(s) 51, 260, 341, 2725, 2726, 2980
SchI GAGTC 6 cut(s) 1277, 1604, 1667, 1736, 1922, 3112
ScrFI CCNGG 7 cut(s) 55, 1091, 2548, 2978, 2984, 3184, 3584
SduI GDGCHC 3 cut(s) 395, 2729, 3068
SfaAI GCGATCGC 1 cut(s) 1999
SfcI CTRYAG 1 cut(s) 3201
SfuI TTCGAA 2 cut(s) 101, 2959
SgfI GCGATCGC 1 cut(s) 1999
SinI GGWCC 2 cut(s) 51, 260
SmiI ATTTAAAT 1 cut(s) 3337
SmiMI CAYNNNNRTG 2 cut(s) 756, 1286
SmlI CTYRAG 4 cut(s) 1127, 2681, 2819, 3120
SmoI CTYRAG 4 cut(s) 1127, 2681, 2819, 3120
SpeI ACTAGT 1 cut(s) 2860
SphI GCATGC 1 cut(s) 2680
SspI AATATT 3 cut(s) 1175, 2474, 3229
SspMI CTAG 3 cut(s) 764, 1437, 2861
StyD4I CCNGG 7 cut(s) 53, 1089, 2546, 2976, 2982, 3182, 3582
StyI CCWWGG 6 cut(s) 69, 120, 256, 267, 514, 1146
SwaI ATTTAAAT 1 cut(s) 3337
TaaI ACNGT 7 cut(s) 145, 911, 1616, 1832, 1847, 2965, 3202
TaiI ACGT 1 cut(s) 685
TaqI TCGA 8 cut(s) 101, 177, 1751, 1923, 2296, 2406, 2938, 2959
TatI WGTACW 2 cut(s) 2685, 3316
TauI GCSGC 3 cut(s) 425, 2313, 2560
TfiI GAWTC 8 cut(s) 98, 688, 883, 1238, 1382, 1583, 3251, 3304
TscAI CASTG 6 cut(s) 916, 1852, 2014, 2596, 2974, 3303
TseFI GTSAC 8 cut(s) 33, 832, 1141, 2005, 2084, 2591, 3092, 3178
TseI GCWGC 6 cut(s) 187, 592, 959, 976, 2027, 2996
Tsp45I GTSAC 8 cut(s) 33, 832, 1141, 2005, 2084, 2591, 3092, 3178
TspGWI ACGGA 3 cut(s) 930, 1756, 1896
TspRI CASTG 6 cut(s) 916, 1852, 2014, 2596, 2974, 3303
Vha464I CTTAAG 1 cut(s) 2681
VneI GTGCAC 1 cut(s) 3064
VpaK11BI GGWCC 2 cut(s) 51, 260
XagI CCTNNNNNAGG 1 cut(s) 2384
XapI RAATTY 6 cut(s) 428, 1680, 1937, 2147, 2767, 3423
XceI RCATGY 7 cut(s) 1511, 2061, 2282, 2542, 2680, 2704, 3623
XcmI CCANNNNNNNNNTGG 1 cut(s) 2749
XspI CTAG 3 cut(s) 764, 1437, 2861
Zsp2I ATGCAT 2 cut(s) 2706, 2836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.