Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001512

Physical Location & Seq

Genomic Coordinates Reverse (-)

1112871 .. 1113859

Gene Structure 989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCGACCCAACCGGCGAAAGAGTCTGTTCAATGTTTCGGAAGGAAGAAGACGGCAACAGCAGTCACCTACTGCAAACGGGGCTCGGGCATGATTAAGCTCAACGGTTCGCCGATCGAGCTTTATCAGCCAGAGATCCTCCGATTCAAGATCTTCGAGCCAGTCCTTCTCCTCGGGAAACACCGTTTCGCCGGAGTTGACATGAGGATCCGTGCCACGGGCGGTGGTAACACATCTCGGGTCTACGCAATCCGTCAGAGTATCGCTAAGGCCCTCGTTGCTTACTACCAGAAGTACGTTGATGAGCAGTCGAAGAAGGAGATCAAGGACATCTTGATGAGGTACGATAGGACTCTTCTTGTTGCGGATCCGAGAAGGTGCGAGTCGAAGAAGTTTGGTGGTCCTGGTGCTCGTGCTCGTTTCCAGAAGAGTTACCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0030490 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

146

Amino Acids

16.59

Weight (kDa)

10.19

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S9	PF00380	14 - 146	9.9e-36	Ribosomal protein S9/S16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G09990 AT3G04230 AT5G18380 AT5G18380
fragaria_vesca	FvH4_2g05750
malus_domestica	MD05G1084000.v1.1 MD13G1187300.v1.1 MD16G1188000.v1.1
prunus_persica	Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.8G128300_v2.0.a1
pyrus_communis	pycom16g15800
rosa_chinensis	RchiOBHm_Chr2g0126911 RchiOBHm_Chr3g0469551 RchiOBHm_Chr4g0416971 RchiOBHm_Chr7g0205351
rosa_laevigata	RLG00000003385 RLG00000018927
rosa_multiflora	Rmu_co8452851.1_g000001 Rmu_sc0000007.1_g000029 Rmu_sc0007239.1_g000007 Rmu_sc0009725.1_g000007 Rmu_sc0022422.1_g000001 Rmu_ssc0000004.1_g000020 Rmu_ssc0000010.1_g000016
rosa_roxburghii	Rroxscaffold_2G00116930 Rroxscaffold_3G00252430 Rroxscaffold_5G00360850
rosa_rugosa	Rorug02G0270100 Rorug04G0145800 Rorug07G0090300 Rorug07G0289500 Rorug07G0320600
rosa_samantha	Rh1BG296000 Rh1DG328300 Rh2AG322400 Rh2BG330600 Rh2CG310500 Rh2DG349900 Rh4BG205400 Rh4CG219100 Rh4DG205800 Rh7AG220700 Rh7BG217000 Rh7BG274700 Rh7CG233700 Rh7DG227600
rosa_wichuraiana	Rw2G026150 Rw4G017650 Rw7G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	243
AciI	CCGC	2 cut(s)	222, 365
AclWI	GGATC	5 cut(s)	130, 202, 215, 362, 375
AfaI	GTAC	2 cut(s)	296, 344
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	2 cut(s)	32, 148
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	2 cut(s)	100, 121
AluI	AGCT	2 cut(s)	100, 121
Alw21I	GWGCWC	2 cut(s)	412, 418
AlwI	GGATC	5 cut(s)	130, 202, 215, 362, 375
Ama87I	CYCGRG	3 cut(s)	85, 173, 237
AoxI	GGCC	1 cut(s)	270
AspS9I	GGNCC	2 cut(s)	271, 401
AsuHPI	GGTGA	1 cut(s)	58
AvaI	CYCGRG	3 cut(s)	85, 173, 237
AvaII	GGWCC	1 cut(s)	401
BamHI	GGATCC	2 cut(s)	207, 367
BanII	GRGCYC	1 cut(s)	86
BauI	CACGAG	1 cut(s)	411
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	2 cut(s)	412, 418
BceAI	ACGGC	1 cut(s)	69
BciT130I	CCWGG	1 cut(s)	405
BglII	AGATCT	1 cut(s)	150
Bme1390I	CCNGG	1 cut(s)	405
Bme18I	GGWCC	1 cut(s)	401
BmeT110I	CYCGRG	3 cut(s)	85, 173, 237
BmgT120I	GGNCC	2 cut(s)	271, 401
BmiI	GGNNCC	2 cut(s)	209, 369
BmrFI	CCNGG	1 cut(s)	405
BpiI	GAAGAC	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	172, 216
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse118I	RCCGGY	1 cut(s)	13
Bse1I	ACTGG	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	2 cut(s)	172, 216
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	161
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	272
BsiEI	CGRYCG	1 cut(s)	117
BsiHKAI	GWGCWC	2 cut(s)	412, 418
BsiHKCI	CYCGRG	3 cut(s)	85, 173, 237
BsiSI	CCGG	2 cut(s)	14, 192
BslI	CCNNNNNNNGG	1 cut(s)	217
BsnI	GGCC	1 cut(s)	272
BsoBI	CYCGRG	3 cut(s)	85, 173, 237
Bsp1286I	GDGCHC	3 cut(s)	86, 412, 418
Bsp143I	GATC	6 cut(s)	114, 135, 150, 207, 321, 367
BspACI	CCGC	2 cut(s)	222, 365
BspANI	GGCC	1 cut(s)	272
BspLI	GGNNCC	2 cut(s)	209, 369
BspPI	GGATC	5 cut(s)	130, 202, 215, 362, 375
BsrFI	RCCGGY	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	2 cut(s)	172, 216
BssMI	GATC	6 cut(s)	114, 135, 150, 207, 321, 367
BssSI	CACGAG	1 cut(s)	411
Bst2BI	CACGAG	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	3 cut(s)	107, 185, 437
Bst6I	CTCTTC	2 cut(s)	360, 422
BstDEI	CTNAG	1 cut(s)	267
BstDSI	CCRYGG	1 cut(s)	216
BstKTI	GATC	6 cut(s)	117, 138, 153, 210, 324, 370
BstMBI	GATC	6 cut(s)	114, 135, 150, 207, 321, 367
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 118, 127, 278
BstNI	CCWGG	1 cut(s)	405
BstSCI	CCNGG	1 cut(s)	403
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	4 cut(s)	135, 150, 207, 367
BstYI	RGATCY	4 cut(s)	135, 150, 207, 367
BsuRI	GGCC	1 cut(s)	272
BtgI	CCRYGG	1 cut(s)	216
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	2 cut(s)	271, 401
Csp6I	GTAC	2 cut(s)	295, 343
CviAII	CATG	2 cut(s)	91, 202
CviJI	RGCY	6 cut(s)	84, 100, 121, 130, 160, 272
CviKI_1	RGCY	6 cut(s)	84, 100, 121, 130, 160, 272
CviQI	GTAC	2 cut(s)	295, 343
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	6 cut(s)	116, 137, 152, 209, 323, 369
DpnII	GATC	6 cut(s)	114, 135, 150, 207, 321, 367
Eam1104I	CTCTTC	2 cut(s)	360, 422
EarI	CTCTTC	2 cut(s)	360, 422
Eco24I	GRGCYC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	401
Eco88I	CYCGRG	3 cut(s)	85, 173, 237
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	86
FaeI	CATG	2 cut(s)	94, 205
FaiI	YATR	2 cut(s)	92, 203
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FatI	CATG	2 cut(s)	90, 201
FblI	GTMKAC	1 cut(s)	243
FriOI	GRGCYC	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	2 cut(s)	14, 192
Hin1II	CATG	2 cut(s)	94, 205
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	4 cut(s)	23, 144, 352, 383
HpaII	CCGG	2 cut(s)	14, 192
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	199, 244
Hpy188I	TCNGA	4 cut(s)	41, 143, 258, 372
Hpy188III	TCNNGA	4 cut(s)	148, 175, 334, 424
Hpy8I	GTNNAC	2 cut(s)	199, 244
HpyAV	CCTTC	4 cut(s)	36, 176, 310, 369
HpyCH4III	ACNGT	3 cut(s)	107, 185, 437
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	1 cut(s)	75
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 118, 127, 278
HpyF3I	CTNAG	1 cut(s)	267
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	94, 205
Kzo9I	GATC	6 cut(s)	114, 135, 150, 207, 321, 367
LpnPI	CCDG	8 cut(s)	27, 144, 174, 205, 302, 390, 417, 437
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	3 cut(s)	64, 227, 431
MalI	GATC	6 cut(s)	116, 137, 152, 209, 323, 369
MboI	GATC	6 cut(s)	114, 135, 150, 207, 321, 367
MboII	GAAGA	7 cut(s)	58, 61, 145, 325, 347, 400, 439
MflI	RGATCY	4 cut(s)	135, 150, 207, 367
MhlI	GDGCHC	3 cut(s)	86, 412, 418
MlyI	GAGTC	3 cut(s)	32, 346, 392
MnlI	CCTC	5 cut(s)	149, 182, 198, 284, 333
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	2 cut(s)	14, 192
MspR9I	CCNGG	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	4 cut(s)	81, 118, 127, 278
NdeII	GATC	6 cut(s)	114, 135, 150, 207, 321, 367
NlaIII	CATG	2 cut(s)	94, 205
NlaIV	GGNNCC	2 cut(s)	209, 369
NmuCI	GTSAC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	144
Ple19I	CGATCG	1 cut(s)	117
PleI	GAGTC	3 cut(s)	31, 346, 391
PpsI	GAGTC	3 cut(s)	31, 346, 391
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	2 cut(s)	209, 369
PspPI	GGNCC	2 cut(s)	271, 401
PsuI	RGATCY	4 cut(s)	135, 150, 207, 367
PvuI	CGATCG	1 cut(s)	117
RsaI	GTAC	2 cut(s)	296, 344
RsaNI	GTAC	2 cut(s)	295, 343
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	96
Sau3AI	GATC	6 cut(s)	114, 135, 150, 207, 321, 367
Sau96I	GGNCC	2 cut(s)	271, 401
SchI	GAGTC	3 cut(s)	32, 346, 392
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	3 cut(s)	86, 412, 418
SetI	ASST	6 cut(s)	71, 102, 123, 300, 344, 380
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	1 cut(s)	335
SsiI	CCGC	2 cut(s)	222, 365
StyD4I	CCNGG	1 cut(s)	403
TaaI	ACNGT	3 cut(s)	107, 185, 437
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	4 cut(s)	117, 156, 311, 386
TfiI	GAWTC	1 cut(s)	144
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	64
TspGWI	ACGGA	2 cut(s)	200, 242
VpaK11BI	GGWCC	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.