Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007239.1

Orthogroup ID

OG0001512

Physical Location & Seq

Genomic Coordinates Reverse (-)

38027 .. 38608

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007239.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atggcggctcccccgatcaaatcgatccagtgctttggccgcaagaagactgcggtggctgtcacctactgcaaggaaggctgcggcttgatcaagatcaacggttgcccaatcaagctcgtggagccgaagatcctccgcttcaagtcctacgagcccatccttctggtcggactacaccgtttcgccagcgtcgacatgaggatcccggtcaagggaggaggtcacacttctcagatctacgccatccgtcagagcttcaccaaggccttggtcgcttattaccagaagtttgtggatgagcagagcaagaaggaaatcaaggacattctcgtcaggtatgatagtactctcctcgtcgctgatccaaggctttgcgagccagagctaggtttcgagtggctggtgttgtcggtttcgaatcacgcctttctgagacggaccgattcggaccagatttgtatgaggcggtggagagtgcggttgggcacgaagtccccagatgaggcggtggaaggtgcgatgaatgataaggaacataatgatggggatgggcgtagggattgtggtggtgatcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

193

Amino Acids

21.78

Weight (kDa)

9.06

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G09990 AT3G04230 AT5G18380 AT5G18380
fragaria_vesca	FvH4_2g05750
malus_domestica	MD05G1084000.v1.1 MD13G1187300.v1.1 MD16G1188000.v1.1
prunus_persica	Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.8G128300_v2.0.a1
pyrus_communis	pycom16g15800
rosa_chinensis	RchiOBHm_Chr2g0126911 RchiOBHm_Chr3g0469551 RchiOBHm_Chr4g0416971 RchiOBHm_Chr7g0205351
rosa_laevigata	RLG00000003385 RLG00000018927
rosa_multiflora	Rmu_co8452851.1_g000001 Rmu_sc0000007.1_g000029 Rmu_sc0007239.1_g000007 Rmu_sc0009725.1_g000007 Rmu_sc0022422.1_g000001 Rmu_ssc0000004.1_g000020 Rmu_ssc0000010.1_g000016
rosa_roxburghii	Rroxscaffold_2G00116930 Rroxscaffold_3G00252430 Rroxscaffold_5G00360850
rosa_rugosa	Rorug02G0270100 Rorug04G0145800 Rorug07G0090300 Rorug07G0289500 Rorug07G0320600
rosa_samantha	Rh1BG296000 Rh1DG328300 Rh2AG322400 Rh2BG330600 Rh2CG310500 Rh2DG349900 Rh4BG205400 Rh4CG219100 Rh4DG205800 Rh7AG220700 Rh7BG217000 Rh7BG274700 Rh7CG233700 Rh7DG227600
rosa_wichuraiana	Rw2G026150 Rw4G017650 Rw7G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	332
AccI	GTMKAC	1 cut(s)	195
AciI	CCGC	8 cut(s)	5, 40, 53, 84, 139, 469, 481, 509
AclWI	GGATC	5 cut(s)	19, 127, 199, 212, 359
AcoI	YGGCCR	1 cut(s)	37
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	4 cut(s)	214, 215, 389, 505
AgsI	TTSAA	1 cut(s)	145
AluBI	AGCT	3 cut(s)	118, 258, 388
AluI	AGCT	3 cut(s)	118, 258, 388
Alw26I	GTCTC	1 cut(s)	430
AlwI	GGATC	5 cut(s)	19, 127, 199, 212, 359
AoxI	GGCC	2 cut(s)	37, 267
ApeKI	GCWGC	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	441, 451
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	2 cut(s)	55, 253
AsuII	TTCGAA	1 cut(s)	419
AvaII	GGWCC	2 cut(s)	441, 451
BaeGI	GKGCMC	1 cut(s)	491
BamHI	GGATCC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	159
BauI	CACGAG	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	4 cut(s)	167, 254, 539, 545
BclI	TGATCA	2 cut(s)	90, 574
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	430
BfaI	CTAG	1 cut(s)	389
BglII	AGATCT	1 cut(s)	237
BisI	GCNGC	4 cut(s)	6, 40, 82, 85
BlsI	GCNGC	4 cut(s)	7, 41, 83, 86
BmcAI	AGTACT	1 cut(s)	349
Bme1390I	CCNGG	1 cut(s)	209
Bme18I	GGWCC	2 cut(s)	441, 451
BmgT120I	GGNCC	2 cut(s)	441, 451
BmiI	GGNNCC	3 cut(s)	9, 126, 206
BmrFI	CCNGG	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	53
Bpu14I	TTCGAA	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	209
Bsa29I	ATCGAT	1 cut(s)	23
BsaBI	GATNNNNATC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	264, 270, 368
Bsc4I	CCNNNNNNNGG	4 cut(s)	214, 215, 389, 505
Bse1I	ACTGG	1 cut(s)	28
Bse8I	GATNNNNATC	1 cut(s)	95
BseCI	ATCGAT	1 cut(s)	23
BseDI	CCNNGG	3 cut(s)	264, 270, 368
BseGI	GGATG	4 cut(s)	159, 246, 304, 556
BseJI	GATNNNNATC	1 cut(s)	95
BseLI	CCNNNNNNNGG	4 cut(s)	214, 215, 389, 505
BseMII	CTCAG	2 cut(s)	248, 425
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	2 cut(s)	234, 344
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	1 cut(s)	68
BshFI	GGCC	2 cut(s)	39, 269
BshVI	ATCGAT	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	481
BslI	CCNNNNNNNGG	4 cut(s)	214, 215, 389, 505
BsmAI	GTCTC	1 cut(s)	430
BsmBI	CGTCTC	1 cut(s)	430
BsmFI	GGGAC	1 cut(s)	481
BsnI	GGCC	2 cut(s)	39, 269
Bsp119I	TTCGAA	1 cut(s)	419
Bsp1286I	GDGCHC	2 cut(s)	159, 491
Bsp143I	GATC	9 cut(s)	15, 24, 90, 96, 132, 204, 237, 364, 574
BspACI	CCGC	8 cut(s)	5, 40, 53, 84, 139, 469, 481, 509
BspANI	GGCC	2 cut(s)	39, 269
BspCNI	CTCAG	2 cut(s)	247, 426
BspDI	ATCGAT	1 cut(s)	23
BspLI	GGNNCC	3 cut(s)	9, 126, 206
BspPI	GGATC	5 cut(s)	19, 127, 199, 212, 359
BspT104I	TTCGAA	1 cut(s)	419
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	3 cut(s)	264, 270, 368
BssMI	GATC	9 cut(s)	15, 24, 90, 96, 132, 204, 237, 364, 574
BssSI	CACGAG	1 cut(s)	119
BssT1I	CCWWGG	3 cut(s)	264, 270, 368
Bst2BI	CACGAG	1 cut(s)	119
Bst4CI	ACNGT	2 cut(s)	104, 182
BstBI	TTCGAA	1 cut(s)	419
BstC8I	GCNNGC	2 cut(s)	190, 380
BstDEI	CTNAG	2 cut(s)	234, 434
BstF5I	GGATG	4 cut(s)	159, 246, 304, 556
BstKTI	GATC	9 cut(s)	18, 27, 93, 99, 135, 207, 240, 367, 577
BstMAI	GTCTC	1 cut(s)	430
BstMBI	GATC	9 cut(s)	15, 24, 90, 96, 132, 204, 237, 364, 574
BstMWI	GCNNNNNNNGC	5 cut(s)	39, 78, 124, 275, 379
BstSCI	CCNGG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	491
BstV1I	GCAGC	1 cut(s)	68
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	3 cut(s)	132, 204, 237
BstXI	CCANNNNNNTGG	3 cut(s)	35, 166, 271
BstYI	RGATCY	3 cut(s)	132, 204, 237
Bsu15I	ATCGAT	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	39, 269
BsuTUI	ATCGAT	1 cut(s)	23
BtgZI	GCGATG	1 cut(s)	536
BtsCI	GGATG	4 cut(s)	159, 246, 304, 556
BtsIMutI	CAGTG	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	190, 380
Cfr13I	GGNCC	2 cut(s)	441, 451
ClaI	ATCGAT	1 cut(s)	23
CpoI	CGGWCCG	1 cut(s)	441
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	348
CspI	CGGWCCG	1 cut(s)	441
CviAII	CATG	1 cut(s)	199
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	2 cut(s)	234, 434
DpnI	GATC	9 cut(s)	17, 26, 92, 98, 134, 206, 239, 366, 576
DpnII	GATC	9 cut(s)	15, 24, 90, 96, 132, 204, 237, 364, 574
DrdI	GACNNNNNNGTC	1 cut(s)	332
DseDI	GACNNNNNNGTC	1 cut(s)	332
EaeI	YGGCCR	1 cut(s)	37
Eco130I	CCWWGG	3 cut(s)	264, 270, 368
Eco147I	AGGCCT	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	2 cut(s)	441, 451
EcoT14I	CCWWGG	3 cut(s)	264, 270, 368
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	3 cut(s)	264, 270, 368
Esp3I	CGTCTC	1 cut(s)	430
FaeI	CATG	1 cut(s)	202
FaiI	YATR	4 cut(s)	200, 342, 464, 540
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	1 cut(s)	198
FbaI	TGATCA	2 cut(s)	90, 574
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	4 cut(s)	6, 40, 82, 85
FokI	GGATG	4 cut(s)	146, 233, 311, 563
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	4 cut(s)	6, 40, 82, 85
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	4 cut(s)	6, 40, 82, 85
HaeIII	GGCC	2 cut(s)	39, 269
HapII	CCGG	1 cut(s)	209
HgaI	GACGC	1 cut(s)	181
Hin1II	CATG	1 cut(s)	202
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	421, 446
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	2 cut(s)	55, 253
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	5 cut(s)	173, 237, 255, 435, 451
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	2 cut(s)	197, 362
HpyAV	CCTTC	4 cut(s)	71, 173, 307, 509
HpyCH4III	ACNGT	2 cut(s)	104, 182
HpyCH4V	TGCA	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	5 cut(s)	39, 78, 124, 275, 379
HpyF3I	CTNAG	2 cut(s)	234, 434
Hsp92II	CATG	1 cut(s)	202
Ksp22I	TGATCA	2 cut(s)	90, 574
Kzo9I	GATC	9 cut(s)	15, 24, 90, 96, 132, 204, 237, 364, 574
LmnI	GCTCC	2 cut(s)	13, 124
Lsp1109I	GCAGC	1 cut(s)	68
MaeI	CTAG	1 cut(s)	389
MaeIII	GTNAC	2 cut(s)	61, 224
MalI	GATC	9 cut(s)	17, 26, 92, 98, 134, 206, 239, 366, 576
MboI	GATC	9 cut(s)	15, 24, 90, 96, 132, 204, 237, 364, 574
MboII	GAAGA	2 cut(s)	58, 142
MflI	RGATCY	3 cut(s)	132, 204, 237
MhlI	GDGCHC	2 cut(s)	159, 491
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	7 cut(s)	146, 195, 212, 215, 365, 459, 499
MslI	CAYNNNNRTG	1 cut(s)	543
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	5 cut(s)	39, 78, 124, 275, 379
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	9 cut(s)	15, 24, 90, 96, 132, 204, 237, 364, 574
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	3 cut(s)	9, 126, 206
NmuCI	GTSAC	2 cut(s)	61, 224
NspV	TTCGAA	1 cut(s)	419
PceI	AGGCCT	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	421, 446
PkrI	GCNGC	4 cut(s)	7, 41, 83, 86
PspN4I	GGNNCC	3 cut(s)	9, 126, 206
PspPI	GGNCC	2 cut(s)	441, 451
PsuI	RGATCY	3 cut(s)	132, 204, 237
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
RseI	CAYNNNNRTG	1 cut(s)	543
Rsr2I	CGGWCCG	1 cut(s)	441
RsrII	CGGWCCG	1 cut(s)	441
SalI	GTCGAC	1 cut(s)	194
SatI	GCNGC	4 cut(s)	6, 40, 82, 85
Sau3AI	GATC	9 cut(s)	15, 24, 90, 96, 132, 204, 237, 364, 574
Sau96I	GGNCC	2 cut(s)	441, 451
ScaI	AGTACT	1 cut(s)	349
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	2 cut(s)	159, 491
SetI	ASST	8 cut(s)	68, 120, 226, 260, 341, 390, 394, 520
SfuI	TTCGAA	1 cut(s)	419
SinI	GGWCC	2 cut(s)	441, 451
SmiMI	CAYNNNNRTG	1 cut(s)	543
SseBI	AGGCCT	1 cut(s)	269
SsiI	CCGC	8 cut(s)	5, 40, 53, 84, 139, 469, 481, 509
SspMI	CTAG	1 cut(s)	389
StuI	AGGCCT	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	207
StyI	CCWWGG	3 cut(s)	264, 270, 368
TaaI	ACNGT	2 cut(s)	104, 182
TaqI	TCGA	4 cut(s)	23, 195, 396, 419
TaqII	GACCGA	1 cut(s)	458
TatI	WGTACW	1 cut(s)	347
TauI	GCSGC	3 cut(s)	8, 42, 87
TfiI	GAWTC	2 cut(s)	421, 446
TscAI	CASTG	1 cut(s)	35
TseFI	GTSAC	2 cut(s)	61, 224
TseI	GCWGC	1 cut(s)	81
Tsp45I	GTSAC	2 cut(s)	61, 224
TspDTI	ATGAA	1 cut(s)	539
TspGWI	ACGGA	2 cut(s)	239, 454
TspRI	CASTG	1 cut(s)	35
VpaK11BI	GGWCC	2 cut(s)	441, 451
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	1 cut(s)	389
ZrmI	AGTACT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.