Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001512

Physical Location & Seq

Genomic Coordinates Reverse (-)

15202068 .. 15202878

Gene Structure 811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G128300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCGGCTCCTGCAATAGAGTCAGTACAGTGCTTCGGCCGCAAGAAAACCGCGGTGGCCGTGACCTACTGCAAGCGTGGGCGAGGCCTGATCAAGATCAATGGCTGCCCAATCGAGCTCGTCGAGCCGGAGATCCTCCGCTTCAAGGCCTACGAGCCTATTCTCCTCCTGGGACGACACCGTTTCGCTGGAGTCGACATGCGCATTCGCGTCAAGGGTGGTGGTCACACCTCTCAGATCTACGCCATTCGCCAGAGCATAGCCAAAGCTCTGGTCGCTTTTTACCAAAAGTATGTCGATGAGCAGAGCAAGAAGGAGATCAAGGACATCCTCGTTAGGTACGATAGGACCCTCCTTGTTGCTGACCCAAGGCGCTGCGAGCCCAAGAAGTTCGGTGGTCGTGGTGCTCGTGCTAGGTTCCAGAAGTCTTACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

146

Amino Acids

16.52

Weight (kDa)

10.21

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G09990 AT3G04230 AT5G18380 AT5G18380
fragaria_vesca	FvH4_2g05750
malus_domestica	MD05G1084000.v1.1 MD13G1187300.v1.1 MD16G1188000.v1.1
prunus_persica	Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.8G128300_v2.0.a1
pyrus_communis	pycom16g15800
rosa_chinensis	RchiOBHm_Chr2g0126911 RchiOBHm_Chr3g0469551 RchiOBHm_Chr4g0416971 RchiOBHm_Chr7g0205351
rosa_laevigata	RLG00000003385 RLG00000018927
rosa_multiflora	Rmu_co8452851.1_g000001 Rmu_sc0000007.1_g000029 Rmu_sc0007239.1_g000007 Rmu_sc0009725.1_g000007 Rmu_sc0022422.1_g000001 Rmu_ssc0000004.1_g000020 Rmu_ssc0000010.1_g000016
rosa_roxburghii	Rroxscaffold_2G00116930 Rroxscaffold_3G00252430 Rroxscaffold_5G00360850
rosa_rugosa	Rorug02G0270100 Rorug04G0145800 Rorug07G0090300 Rorug07G0289500 Rorug07G0320600
rosa_samantha	Rh1BG296000 Rh1DG328300 Rh2AG322400 Rh2BG330600 Rh2CG310500 Rh2DG349900 Rh4BG205400 Rh4CG219100 Rh4DG205800 Rh7AG220700 Rh7BG217000 Rh7BG274700 Rh7CG233700 Rh7DG227600
rosa_wichuraiana	Rw2G026150 Rw4G017650 Rw7G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	2 cut(s)	53, 210
AciI	CCGC	5 cut(s)	5, 40, 51, 53, 139
AclWI	GGATC	1 cut(s)	127
AcoI	YGGCCR	2 cut(s)	37, 57
AfaI	GTAC	2 cut(s)	27, 341
AfiI	CCNNNNNNNGG	1 cut(s)	145
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	2 cut(s)	118, 269
AluI	AGCT	2 cut(s)	118, 269
Alw21I	GWGCWC	2 cut(s)	120, 409
AlwI	GGATC	1 cut(s)	127
AoxI	GGCC	4 cut(s)	37, 57, 85, 147
ApeKI	GCWGC	2 cut(s)	105, 375
ArsI	GACNNNNNNTTYG	2 cut(s)	258, 290
AspLEI	GCGC	2 cut(s)	204, 375
AspS9I	GGNCC	1 cut(s)	348
AvaII	GGWCC	1 cut(s)	348
BanII	GRGCYC	2 cut(s)	120, 384
BauI	CACGAG	1 cut(s)	408
Bbv12I	GWGCWC	2 cut(s)	120, 409
BbvI	GCAGC	2 cut(s)	92, 362
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	170
BclI	TGATCA	1 cut(s)	90
BfaI	CTAG	1 cut(s)	414
BfoI	RGCGCY	1 cut(s)	376
BglII	AGATCT	1 cut(s)	237
BisI	GCNGC	4 cut(s)	6, 40, 106, 376
BlsI	GCNGC	4 cut(s)	7, 41, 107, 377
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	348
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	3 cut(s)	9, 350, 419
BmrFI	CCNGG	1 cut(s)	170
BpmI	CTGGAG	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	51, 169, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse8I	GATNNNNATC	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	3 cut(s)	51, 169, 368
BseGI	GGATG	1 cut(s)	327
BseJI	GATNNNNATC	1 cut(s)	95
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMII	CTCAG	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	155
BseX3I	CGGCCG	1 cut(s)	37
BseXI	GCAGC	2 cut(s)	92, 362
Bsh1236I	CGCG	2 cut(s)	53, 210
Bsh1285I	CGRYCG	1 cut(s)	40
BshFI	GGCC	4 cut(s)	39, 59, 87, 149
BsiEI	CGRYCG	1 cut(s)	40
BsiHKAI	GWGCWC	2 cut(s)	120, 409
BsiSI	CCGG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	204
BsnI	GGCC	4 cut(s)	39, 59, 87, 149
Bsp1286I	GDGCHC	3 cut(s)	120, 384, 409
Bsp143I	GATC	5 cut(s)	90, 96, 132, 237, 318
BspACI	CCGC	5 cut(s)	5, 40, 51, 53, 139
BspANI	GGCC	4 cut(s)	39, 59, 87, 149
BspCNI	CTCAG	1 cut(s)	247
BspFNI	CGCG	2 cut(s)	53, 210
BspLI	GGNNCC	3 cut(s)	9, 350, 419
BspPI	GGATC	1 cut(s)	127
BssECI	CCNNGG	3 cut(s)	51, 169, 368
BssMI	GATC	5 cut(s)	90, 96, 132, 237, 318
BssSI	CACGAG	1 cut(s)	408
BssT1I	CCWWGG	1 cut(s)	368
Bst2BI	CACGAG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	3 cut(s)	30, 182, 434
BstC8I	GCNNGC	2 cut(s)	74, 380
BstDEI	CTNAG	1 cut(s)	234
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	327
BstFNI	CGCG	2 cut(s)	53, 210
BstH2I	RGCGCY	1 cut(s)	376
BstHHI	GCGC	2 cut(s)	204, 375
BstKTI	GATC	5 cut(s)	93, 99, 135, 240, 321
BstMBI	GATC	5 cut(s)	90, 96, 132, 237, 318
BstMCI	CGRYCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 39, 124, 275, 379
BstNI	CCWGG	1 cut(s)	170
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	168
BstUI	CGCG	2 cut(s)	53, 210
BstV1I	GCAGC	2 cut(s)	92, 362
BstX2I	RGATCY	2 cut(s)	132, 237
BstXI	CCANNNNNNTGG	1 cut(s)	271
BstYI	RGATCY	2 cut(s)	132, 237
BstZI	CGGCCG	1 cut(s)	37
BsuRI	GGCC	4 cut(s)	39, 59, 87, 149
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	74, 380
CfoI	GCGC	2 cut(s)	204, 375
Cfr13I	GGNCC	1 cut(s)	348
Cfr42I	CCGCGG	1 cut(s)	54
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	2 cut(s)	26, 340
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviAII	CATG	1 cut(s)	199
CviQI	GTAC	2 cut(s)	26, 340
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	5 cut(s)	92, 98, 134, 239, 320
DpnII	GATC	5 cut(s)	90, 96, 132, 237, 318
EaeI	YGGCCR	2 cut(s)	37, 57
EagI	CGGCCG	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	118
EclXI	CGGCCG	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	368
Eco147I	AGGCCT	2 cut(s)	87, 149
Eco24I	GRGCYC	2 cut(s)	120, 384
Eco47I	GGWCC	1 cut(s)	348
Eco52I	CGGCCG	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	368
EcoT38I	GRGCYC	2 cut(s)	120, 384
ErhI	CCWWGG	1 cut(s)	368
FaeI	CATG	1 cut(s)	202
FaiI	YATR	3 cut(s)	200, 260, 294
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	1 cut(s)	198
FbaI	TGATCA	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	4 cut(s)	6, 40, 106, 376
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	2 cut(s)	120, 384
Fsp4HI	GCNGC	4 cut(s)	6, 40, 106, 376
FspAI	RTGCGCAY	1 cut(s)	203
FspBI	CTAG	1 cut(s)	414
FspI	TGCGCA	1 cut(s)	203
GlaI	GCGC	2 cut(s)	203, 374
GluI	GCNGC	4 cut(s)	6, 40, 106, 376
GsuI	CTGGAG	1 cut(s)	210
HaeII	RGCGCY	1 cut(s)	376
HaeIII	GGCC	4 cut(s)	39, 59, 87, 149
HapII	CCGG	1 cut(s)	128
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	2 cut(s)	204, 375
Hin1II	CATG	1 cut(s)	202
Hin6I	GCGC	2 cut(s)	202, 373
HinP1I	GCGC	2 cut(s)	202, 373
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	20, 192
HpaII	CCGG	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	1 cut(s)	237
Hpy188III	TCNNGA	2 cut(s)	94, 421
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	3 cut(s)	30, 182, 434
HpyCH4V	TGCA	2 cut(s)	14, 72
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 39, 124, 275, 379
HpyF3I	CTNAG	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	202
HspAI	GCGC	2 cut(s)	202, 373
Ksp22I	TGATCA	1 cut(s)	90
KspI	CCGCGG	1 cut(s)	54
Kzo9I	GATC	5 cut(s)	90, 96, 132, 237, 318
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	9 cut(s)	24, 101, 141, 155, 174, 182, 257, 266, 434
Lsp1109I	GCAGC	2 cut(s)	92, 362
MaeI	CTAG	1 cut(s)	414
MaeIII	GTNAC	2 cut(s)	61, 224
MalI	GATC	5 cut(s)	92, 98, 134, 239, 320
MboI	GATC	5 cut(s)	90, 96, 132, 237, 318
MflI	RGATCY	2 cut(s)	132, 237
MhlI	GDGCHC	3 cut(s)	120, 384, 409
MlyI	GAGTC	2 cut(s)	29, 201
MnlI	CCTC	6 cut(s)	77, 146, 176, 241, 341, 362
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	170
Mva1269I	GAATGC	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	170
MvnI	CGCG	2 cut(s)	53, 210
MwoI	GCNNNNNNNGC	5 cut(s)	11, 39, 124, 275, 379
NdeII	GATC	5 cut(s)	90, 96, 132, 237, 318
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	3 cut(s)	9, 350, 419
NmuCI	GTSAC	2 cut(s)	61, 224
NsbI	TGCGCA	1 cut(s)	203
NspI	RCATGY	1 cut(s)	202
PceI	AGGCCT	2 cut(s)	87, 149
PcsI	WCGNNNNNNNCGW	4 cut(s)	120, 192, 339, 406
PctI	GAATGC	1 cut(s)	204
PkrI	GCNGC	4 cut(s)	7, 41, 107, 377
PleI	GAGTC	2 cut(s)	28, 200
PpsI	GAGTC	2 cut(s)	28, 200
PpuMI	RGGWCCY	1 cut(s)	348
Psp124BI	GAGCTC	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	3 cut(s)	9, 350, 419
PspPI	GGNCC	1 cut(s)	348
PspPPI	RGGWCCY	1 cut(s)	348
PsuI	RGATCY	2 cut(s)	132, 237
RsaI	GTAC	2 cut(s)	27, 341
RsaNI	GTAC	2 cut(s)	26, 340
SacI	GAGCTC	1 cut(s)	120
SacII	CCGCGG	1 cut(s)	54
SalI	GTCGAC	1 cut(s)	194
SatI	GCNGC	4 cut(s)	6, 40, 106, 376
Sau3AI	GATC	5 cut(s)	90, 96, 132, 237, 318
Sau96I	GGNCC	1 cut(s)	348
SchI	GAGTC	2 cut(s)	29, 201
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	3 cut(s)	120, 384, 409
SetI	ASST	6 cut(s)	68, 120, 233, 271, 341, 419
Sfr303I	CCGCGG	1 cut(s)	54
SgrBI	CCGCGG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	348
SseBI	AGGCCT	2 cut(s)	87, 149
SsiI	CCGC	5 cut(s)	5, 40, 51, 53, 139
SspMI	CTAG	1 cut(s)	414
SstI	GAGCTC	1 cut(s)	120
StuI	AGGCCT	2 cut(s)	87, 149
StyD4I	CCNGG	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	3 cut(s)	30, 182, 434
TaqI	TCGA	4 cut(s)	114, 123, 195, 297
TatI	WGTACW	1 cut(s)	25
TauI	GCSGC	2 cut(s)	8, 42
TscAI	CASTG	1 cut(s)	35
TseFI	GTSAC	2 cut(s)	61, 224
TseI	GCWGC	2 cut(s)	105, 375
Tsp45I	GTSAC	2 cut(s)	61, 224
TspRI	CASTG	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	348
XceI	RCATGY	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.