Rorug07G0090300

Belongs to the universal ribosomal protein uS9 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001512
Physical Location & Seq
Forward (+)
7078200 .. 7079954
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0090300.1

Sequence Viewer

Length: 537 bp
ATGGCAAGCTTGAGAAGAGGTTTGATCACAGCCCACCGAGCTCTCAAATCCAGCAACTCCATCTCACCCACTCAGACCCTTCTCAGGCCTCAATATAGTAGTGGCTTAGTTCAGCGCTCTTATTCTACTGATAACACCAGCAATCTACATATCGACCTCTCTAATGAAGAGAGCAAACGGCGGTTATGTAATAGGTTATTGTACAGGAGCAAACAGAGAGGGTTCTTGGAATTGGATTTGGTTCTGGGTAAATGGGTGGAGGATCATATTCATTCCATGGATGAAAATGGAATTAAATCTCTTGTGGATGTTCTTGACCTGGAAAATCCTGATCTATGGAAGTGGTTAAGTGGCCAGGAGCAACCGCCTGAGGCACTCACAACTAATCCGGTTTTCACTGCAGTGCGCAGCAAGGTTACAAACAACCTGGACAGCTATGCTGCTCCTGAGACACGAGCAACACCCGGGAACCCATGGGTTAGAGGATGGGATGATATAAAGAAATATCAGGGCGGTCCCATAACTGGGAACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S9

Protein Analysis

178

Amino Acids

20.1

Weight (kDa)

8.71

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sdh5 PF03937 64 - 137 9.2e-23 Flavinator of succinate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 407
AciI CCGC 3 cut(s) 181, 365, 513
AclWI GGATC 1 cut(s) 270
AcoI YGGCCR 1 cut(s) 352
AfaI GTAC 1 cut(s) 203
AfeI AGCGCT 1 cut(s) 116
AfiI CCNNNNNNNGG 3 cut(s) 84, 524, 525
AjnI CCWGG 3 cut(s) 318, 354, 426
AleI CACNNNNGTG 1 cut(s) 401
AluBI AGCT 3 cut(s) 9, 41, 435
AluI AGCT 3 cut(s) 9, 41, 435
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 443
AlwI GGATC 1 cut(s) 270
Ama87I CYCGRG 1 cut(s) 464
Aor51HI AGCGCT 1 cut(s) 116
AoxI GGCC 2 cut(s) 86, 352
ApeKI GCWGC 2 cut(s) 408, 440
AspLEI GCGC 2 cut(s) 117, 408
AspS9I GGNCC 1 cut(s) 515
AsuC2I CCSGG 2 cut(s) 465, 466
AsuHPI GGTGA 1 cut(s) 57
AvaI CYCGRG 1 cut(s) 464
AvaII GGWCC 1 cut(s) 515
AxyI CCTNAGG 1 cut(s) 369
BalI TGGCCA 1 cut(s) 354
BanII GRGCYC 1 cut(s) 43
BauI CACGAG 1 cut(s) 453
Bbv12I GWGCWC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 420, 427
BccI CCATC 2 cut(s) 68, 480
BceAI ACGGC 1 cut(s) 194
BciT130I CCWGG 3 cut(s) 320, 356, 428
BclI TGATCA 1 cut(s) 24
BcnI CCSGG 2 cut(s) 465, 466
BcoDI GTCTC 1 cut(s) 443
BfmI CTRYAG 1 cut(s) 399
BfoI RGCGCY 1 cut(s) 118
BisI GCNGC 2 cut(s) 409, 441
BlsI GCNGC 2 cut(s) 410, 442
Bme1390I CCNGG 5 cut(s) 320, 356, 428, 465, 466
Bme18I GGWCC 1 cut(s) 515
BmeT110I CYCGRG 1 cut(s) 464
BmgT120I GGNCC 1 cut(s) 515
BmiI GGNNCC 3 cut(s) 470, 517, 530
BmrFI CCNGG 5 cut(s) 320, 356, 428, 465, 466
BmrI ACTGGG 1 cut(s) 534
BmuI ACTGGG 1 cut(s) 534
BpuEI CTTGAG 1 cut(s) 31
BpuMI CCSGG 2 cut(s) 465, 466
BsaJI CCNNGG 3 cut(s) 276, 464, 473
BsaWI WCCGGW 1 cut(s) 388
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 524, 525
Bse1I ACTGG 2 cut(s) 529, 532
Bse21I CCTNAGG 1 cut(s) 369
BseBI CCWGG 3 cut(s) 320, 356, 428
BseDI CCNNGG 3 cut(s) 276, 464, 473
BseGI GGATG 4 cut(s) 286, 313, 491, 496
BseLI CCNNNNNNNGG 3 cut(s) 84, 524, 525
BseMII CTCAG 4 cut(s) 86, 97, 360, 438
BseNI ACTGG 2 cut(s) 529, 532
BseXI GCAGC 2 cut(s) 420, 427
BshFI GGCC 2 cut(s) 88, 354
BsiHKAI GWGCWC 1 cut(s) 43
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 2 cut(s) 389, 465
BslFI GGGAC 1 cut(s) 501
BslI CCNNNNNNNGG 3 cut(s) 84, 524, 525
BsmAI GTCTC 1 cut(s) 443
BsmFI GGGAC 1 cut(s) 501
BsnI GGCC 2 cut(s) 88, 354
BsoBI CYCGRG 1 cut(s) 464
Bsp1286I GDGCHC 1 cut(s) 43
Bsp1407I TGTACA 1 cut(s) 201
Bsp143I GATC 3 cut(s) 24, 262, 331
Bsp19I CCATGG 2 cut(s) 276, 473
BspACI CCGC 3 cut(s) 181, 365, 513
BspANI GGCC 2 cut(s) 88, 354
BspCNI CTCAG 4 cut(s) 85, 96, 361, 439
BspLI GGNNCC 3 cut(s) 470, 517, 530
BspMAI CTGCAG 1 cut(s) 403
BspPI GGATC 1 cut(s) 270
BsrGI TGTACA 1 cut(s) 201
BsrI ACTGG 2 cut(s) 529, 532
BssECI CCNNGG 3 cut(s) 276, 464, 473
BssMI GATC 3 cut(s) 24, 262, 331
BssSI CACGAG 1 cut(s) 453
BssT1I CCWWGG 2 cut(s) 276, 473
Bst2BI CACGAG 1 cut(s) 453
Bst2UI CCWGG 3 cut(s) 320, 356, 428
Bst6I CTCTTC 2 cut(s) 10, 162
BstAUI TGTACA 1 cut(s) 201
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 5 cut(s) 72, 83, 106, 369, 447
BstDSI CCRYGG 2 cut(s) 276, 473
BstF5I GGATG 4 cut(s) 286, 313, 491, 496
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 2 cut(s) 117, 408
BstKTI GATC 3 cut(s) 27, 265, 334
BstMAI GTCTC 1 cut(s) 443
BstMBI GATC 3 cut(s) 24, 262, 331
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 3 cut(s) 320, 356, 428
BstSCI CCNGG 5 cut(s) 318, 354, 426, 463, 464
BstSFI CTRYAG 1 cut(s) 399
BstV1I GCAGC 2 cut(s) 420, 427
Bsu36I CCTNAGG 1 cut(s) 369
BsuRI GGCC 2 cut(s) 88, 354
BtgI CCRYGG 2 cut(s) 276, 473
BtsCI GGATG 4 cut(s) 286, 313, 491, 496
BtsI GCAGTG 2 cut(s) 396, 408
BtsIMutI CAGTG 2 cut(s) 396, 408
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 2 cut(s) 117, 408
Cfr13I GGNCC 1 cut(s) 515
Cfr9I CCCGGG 1 cut(s) 464
Csp6I GTAC 1 cut(s) 202
CviAII CATG 2 cut(s) 277, 474
CviJI RGCY 7 cut(s) 9, 32, 41, 88, 105, 354, 435
CviKI_1 RGCY 7 cut(s) 9, 32, 41, 88, 105, 354, 435
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 5 cut(s) 72, 83, 106, 369, 447
DpnI GATC 3 cut(s) 26, 264, 333
DpnII GATC 3 cut(s) 24, 262, 331
EaeI YGGCCR 1 cut(s) 352
Eam1104I CTCTTC 2 cut(s) 10, 162
EarI CTCTTC 2 cut(s) 10, 162
Ecl136II GAGCTC 1 cut(s) 41
Eco130I CCWWGG 2 cut(s) 276, 473
Eco147I AGGCCT 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 515
Eco47III AGCGCT 1 cut(s) 116
Eco53kI GAGCTC 1 cut(s) 41
Eco81I CCTNAGG 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 464
EcoICRI GAGCTC 1 cut(s) 41
EcoRII CCWGG 3 cut(s) 318, 354, 426
EcoT14I CCWWGG 2 cut(s) 276, 473
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 2 cut(s) 276, 473
FaeI CATG 2 cut(s) 280, 477
FaqI GGGAC 1 cut(s) 501
FatI CATG 2 cut(s) 276, 473
FbaI TGATCA 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 409, 441
FokI GGATG 4 cut(s) 293, 320, 498, 503
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 2 cut(s) 409, 441
FspI TGCGCA 1 cut(s) 407
GlaI GCGC 2 cut(s) 116, 407
GluI GCNGC 2 cut(s) 409, 441
HaeII RGCGCY 1 cut(s) 118
HaeIII GGCC 2 cut(s) 88, 354
HapII CCGG 2 cut(s) 389, 465
HhaI GCGC 2 cut(s) 117, 408
Hin1II CATG 2 cut(s) 280, 477
Hin6I GCGC 2 cut(s) 115, 406
HinP1I GCGC 2 cut(s) 115, 406
HindIII AAGCTT 1 cut(s) 7
HpaII CCGG 2 cut(s) 389, 465
HphI GGTGA 1 cut(s) 57
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 3 cut(s) 314, 329, 446
HpyAV CCTTC 1 cut(s) 89
HpyCH4V TGCA 1 cut(s) 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 5 cut(s) 72, 83, 106, 369, 447
Hsp92II CATG 2 cut(s) 280, 477
HspAI GCGC 2 cut(s) 115, 406
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 3 cut(s) 24, 262, 331
LmnI GCTCC 3 cut(s) 207, 358, 448
Lsp1109I GCAGC 2 cut(s) 420, 427
MaeIII GTNAC 1 cut(s) 415
MalI GATC 3 cut(s) 26, 264, 333
MboI GATC 3 cut(s) 24, 262, 331
MboII GAAGA 2 cut(s) 27, 179
MhlI GDGCHC 1 cut(s) 43
MlsI TGGCCA 1 cut(s) 354
MluCI AATT 2 cut(s) 230, 291
MluNI TGGCCA 1 cut(s) 354
MnlI CCTC 7 cut(s) 11, 99, 167, 212, 253, 364, 476
Mox20I TGGCCA 1 cut(s) 354
MscI TGGCCA 1 cut(s) 354
MseI TTAA 2 cut(s) 294, 347
MslI CAYNNNNRTG 1 cut(s) 401
Msp20I TGGCCA 1 cut(s) 354
MspI CCGG 2 cut(s) 389, 465
MspR9I CCNGG 5 cut(s) 320, 356, 428, 465, 466
MvaI CCWGG 3 cut(s) 320, 356, 428
MwoI GCNNNNNNNGC 1 cut(s) 38
NciI CCSGG 2 cut(s) 465, 466
NcoI CCATGG 2 cut(s) 276, 473
NdeII GATC 3 cut(s) 24, 262, 331
NlaIII CATG 2 cut(s) 280, 477
NlaIV GGNNCC 3 cut(s) 470, 517, 530
NsbI TGCGCA 1 cut(s) 407
OliI CACNNNNGTG 1 cut(s) 401
PceI AGGCCT 1 cut(s) 88
PkrI GCNGC 2 cut(s) 410, 442
Psp124BI GAGCTC 1 cut(s) 43
Psp6I CCWGG 3 cut(s) 318, 354, 426
PspGI CCWGG 3 cut(s) 318, 354, 426
PspN4I GGNNCC 3 cut(s) 470, 517, 530
PspPI GGNCC 1 cut(s) 515
PstI CTGCAG 1 cut(s) 403
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 401
SacI GAGCTC 1 cut(s) 43
SaqAI TTAA 2 cut(s) 294, 347
SatI GCNGC 2 cut(s) 409, 441
Sau3AI GATC 3 cut(s) 24, 262, 331
Sau96I GGNCC 1 cut(s) 515
ScrFI CCNGG 5 cut(s) 320, 356, 428, 465, 466
SduI GDGCHC 1 cut(s) 43
SetI ASST 9 cut(s) 11, 22, 43, 159, 197, 321, 417, 429, 437
SfcI CTRYAG 1 cut(s) 399
SinI GGWCC 1 cut(s) 515
SmaI CCCGGG 1 cut(s) 466
SmiMI CAYNNNNRTG 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 2 cut(s) 230, 291
SseBI AGGCCT 1 cut(s) 88
SsiI CCGC 3 cut(s) 181, 365, 513
SstI GAGCTC 1 cut(s) 43
StuI AGGCCT 1 cut(s) 88
StyD4I CCNGG 5 cut(s) 318, 354, 426, 463, 464
StyI CCWWGG 2 cut(s) 276, 473
TaqI TCGA 1 cut(s) 153
TasI AATT 2 cut(s) 230, 291
TatI WGTACW 1 cut(s) 201
Tru1I TTAA 2 cut(s) 294, 347
Tru9I TTAA 2 cut(s) 294, 347
TscAI CASTG 2 cut(s) 403, 408
TseI GCWGC 2 cut(s) 408, 440
TspDTI ATGAA 3 cut(s) 180, 260, 297
TspMI CCCGGG 1 cut(s) 464
TspRI CASTG 2 cut(s) 403, 408
VpaK11BI GGWCC 1 cut(s) 515
XmaI CCCGGG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.