Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001512

Physical Location & Seq

Genomic Coordinates Reverse (-)

44317507 .. 44318362

Gene Structure 856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00116930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCGGCTCCGGCGATGAAATCGGTGCAGTGCTTCGGGCGCAAGAAGACGGCGGTGGCGGTGACCTACTGTAAGGAAGGGCGGGGGTTGATAAAGATAAACGGGTGCCCAATCGAGCTGGTGGAGCCGGAGATCCTCCGCTTCAAGGCGTACGAGCCCATCCTTCTGCTGGGACGACACCGTTTCGCCGGCGTCGACATGAGGATCCGCGTCAAGGGAGGAGGTCACACTTCACAGATCTACGCCATCCGTCAGAGCATCGCCAAGGCGTTGGTGGCTTATTACCAGAAGTTTGTGGATGAGCAGAGCAAGAAGGAGATCAAGGACATTCTGGTCAGGTACGACCGTACTCTCCTTGTGGCTGATCCAAGGCGCTGCGAGCCCAAGAAGTTTGGTGGTCGTGGTGCCAGAGCTAGGTTCCAGAAGTCTTACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

145

Amino Acids

16.51

Weight (kDa)

10.16

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S9	PF00380	13 - 145	4.3e-38	Ribosomal protein S9/S16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G09990 AT3G04230 AT5G18380 AT5G18380
fragaria_vesca	FvH4_2g05750
malus_domestica	MD05G1084000.v1.1 MD13G1187300.v1.1 MD16G1188000.v1.1
prunus_persica	Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.8G128300_v2.0.a1
pyrus_communis	pycom16g15800
rosa_chinensis	RchiOBHm_Chr2g0126911 RchiOBHm_Chr3g0469551 RchiOBHm_Chr4g0416971 RchiOBHm_Chr7g0205351
rosa_laevigata	RLG00000003385 RLG00000018927
rosa_multiflora	Rmu_co8452851.1_g000001 Rmu_sc0000007.1_g000029 Rmu_sc0007239.1_g000007 Rmu_sc0009725.1_g000007 Rmu_sc0022422.1_g000001 Rmu_ssc0000004.1_g000020 Rmu_ssc0000010.1_g000016
rosa_roxburghii	Rroxscaffold_2G00116930 Rroxscaffold_3G00252430 Rroxscaffold_5G00360850
rosa_rugosa	Rorug02G0270100 Rorug04G0145800 Rorug07G0090300 Rorug07G0289500 Rorug07G0320600
rosa_samantha	Rh1BG296000 Rh1DG328300 Rh2AG322400 Rh2BG330600 Rh2CG310500 Rh2DG349900 Rh4BG205400 Rh4CG219100 Rh4DG205800 Rh7AG220700 Rh7BG217000 Rh7BG274700 Rh7CG233700 Rh7DG227600
rosa_wichuraiana	Rw2G026150 Rw4G017650 Rw7G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	332
AccB1I	GGYRCC	2 cut(s)	105, 404
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	1 cut(s)	210
AciI	CCGC	6 cut(s)	5, 53, 59, 82, 139, 208
AclWI	GGATC	4 cut(s)	127, 199, 212, 359
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	3 cut(s)	152, 341, 349
AfiI	CCNNNNNNNGG	4 cut(s)	145, 169, 214, 414
AgsI	TTSAA	1 cut(s)	145
AluBI	AGCT	2 cut(s)	118, 413
AluI	AGCT	2 cut(s)	118, 413
AlwI	GGATC	4 cut(s)	127, 199, 212, 359
ApeKI	GCWGC	1 cut(s)	375
AspLEI	GCGC	2 cut(s)	42, 375
AsuHPI	GGTGA	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	110
BaeI	ACNNNNGTAYC	2 cut(s)	331, 364
BamHI	GGATCC	1 cut(s)	204
BanI	GGYRCC	2 cut(s)	105, 404
BanII	GRGCYC	2 cut(s)	159, 384
BbsI	GAAGAC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	2 cut(s)	167, 254
BceAI	ACGGC	1 cut(s)	66
BfaI	CTAG	1 cut(s)	414
BfoI	RGCGCY	1 cut(s)	376
BglII	AGATCT	1 cut(s)	237
BisI	GCNGC	2 cut(s)	6, 376
BlsI	GCNGC	2 cut(s)	7, 377
BmiI	GGNNCC	6 cut(s)	9, 107, 126, 206, 406, 419
BmsI	GCATC	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	264, 368
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 169, 214, 414
Bse118I	RCCGGY	1 cut(s)	188
BseDI	CCNNGG	2 cut(s)	264, 368
BseGI	GGATG	3 cut(s)	159, 246, 304
BseLI	CCNNNNNNNGG	4 cut(s)	145, 169, 214, 414
BseRI	GAGGAG	1 cut(s)	234
BseSI	GKGCMC	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	362
BseYI	CCCAGC	1 cut(s)	169
BsgI	GTGCAG	1 cut(s)	47
Bsh1236I	CGCG	1 cut(s)	210
Bsh1285I	CGRYCG	1 cut(s)	346
BshNI	GGYRCC	2 cut(s)	105, 404
BsiEI	CGRYCG	1 cut(s)	346
BsiSI	CCGG	3 cut(s)	11, 128, 189
BsiWI	CGTACG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	4 cut(s)	145, 169, 214, 414
BsmFI	GGGAC	1 cut(s)	186
Bsp1286I	GDGCHC	3 cut(s)	110, 159, 384
Bsp143I	GATC	5 cut(s)	132, 204, 237, 318, 364
BspACI	CCGC	6 cut(s)	5, 53, 59, 82, 139, 208
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	6 cut(s)	9, 107, 126, 206, 406, 419
BspPI	GGATC	4 cut(s)	127, 199, 212, 359
BspT107I	GGYRCC	2 cut(s)	105, 404
BsrFI	RCCGGY	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	264, 368
BssMI	GATC	5 cut(s)	132, 204, 237, 318, 364
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	2 cut(s)	264, 368
Bst4CI	ACNGT	4 cut(s)	71, 182, 347, 434
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	190, 380
BstEII	GGTNACC	1 cut(s)	61
BstF5I	GGATG	3 cut(s)	159, 246, 304
BstFNI	CGCG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	376
BstHHI	GCGC	2 cut(s)	42, 375
BstKTI	GATC	5 cut(s)	135, 207, 240, 321, 367
BstMBI	GATC	5 cut(s)	132, 204, 237, 318, 364
BstMCI	CGRYCG	1 cut(s)	346
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 39, 124, 275, 379
BstPI	GGTNACC	1 cut(s)	61
BstSLI	GKGCMC	1 cut(s)	110
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	362
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	3 cut(s)	132, 204, 237
BstXI	CCANNNNNNTGG	1 cut(s)	271
BstYI	RGATCY	3 cut(s)	132, 204, 237
BtgZI	GCGATG	2 cut(s)	29, 244
BtsCI	GGATG	3 cut(s)	159, 246, 304
BtsI	GCAGTG	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	190, 380
CfoI	GCGC	2 cut(s)	42, 375
Cfr10I	RCCGGY	1 cut(s)	188
CseI	GACGC	2 cut(s)	181, 199
Csp6I	GTAC	3 cut(s)	151, 340, 348
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	8 cut(s)	8, 118, 127, 157, 278, 362, 382, 413
CviKI_1	RGCY	8 cut(s)	8, 118, 127, 157, 278, 362, 382, 413
CviQI	GTAC	3 cut(s)	151, 340, 348
DpnI	GATC	5 cut(s)	134, 206, 239, 320, 366
DpnII	GATC	5 cut(s)	132, 204, 237, 318, 364
DrdI	GACNNNNNNGTC	1 cut(s)	332
DseDI	GACNNNNNNGTC	1 cut(s)	332
Eco130I	CCWWGG	2 cut(s)	264, 368
Eco24I	GRGCYC	2 cut(s)	159, 384
Eco91I	GGTNACC	1 cut(s)	61
EcoO65I	GGTNACC	1 cut(s)	61
EcoT14I	CCWWGG	2 cut(s)	264, 368
EcoT38I	GRGCYC	2 cut(s)	159, 384
ErhI	CCWWGG	2 cut(s)	264, 368
FaeI	CATG	1 cut(s)	202
FaiI	YATR	1 cut(s)	200
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	1 cut(s)	198
FauI	CCCGC	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	2 cut(s)	6, 376
FokI	GGATG	3 cut(s)	146, 233, 311
FriOI	GRGCYC	2 cut(s)	159, 384
Fsp4HI	GCNGC	2 cut(s)	6, 376
FspBI	CTAG	1 cut(s)	414
GlaI	GCGC	2 cut(s)	41, 374
GluI	GCNGC	2 cut(s)	6, 376
GsaI	CCCAGC	1 cut(s)	173
HaeII	RGCGCY	1 cut(s)	376
HapII	CCGG	3 cut(s)	11, 128, 189
HgaI	GACGC	2 cut(s)	181, 199
HhaI	GCGC	2 cut(s)	42, 375
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	202
Hin6I	GCGC	2 cut(s)	40, 373
HinP1I	GCGC	2 cut(s)	40, 373
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HpaII	CCGG	3 cut(s)	11, 128, 189
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	1 cut(s)	421
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	3 cut(s)	71, 173, 307
HpyCH4III	ACNGT	4 cut(s)	71, 182, 347, 434
HpyCH4V	TGCA	1 cut(s)	28
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 39, 124, 275, 379
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	202
HspAI	GCGC	2 cut(s)	40, 373
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Kzo9I	GATC	5 cut(s)	132, 204, 237, 318, 364
LmnI	GCTCC	2 cut(s)	13, 124
Lsp1109I	GCAGC	1 cut(s)	362
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	1 cut(s)	414
MaeIII	GTNAC	2 cut(s)	61, 224
MalI	GATC	5 cut(s)	134, 206, 239, 320, 366
MboI	GATC	5 cut(s)	132, 204, 237, 318, 364
MboII	GAAGA	1 cut(s)	58
MflI	RGATCY	3 cut(s)	132, 204, 237
MhlI	GDGCHC	3 cut(s)	110, 159, 384
MnlI	CCTC	4 cut(s)	146, 195, 212, 215
MreI	CGCCGGCG	1 cut(s)	188
MroNI	GCCGGC	1 cut(s)	188
MspI	CCGG	3 cut(s)	11, 128, 189
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	5 cut(s)	11, 39, 124, 275, 379
NaeI	GCCGGC	1 cut(s)	190
NdeII	GATC	5 cut(s)	132, 204, 237, 318, 364
NgoMIV	GCCGGC	1 cut(s)	188
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	6 cut(s)	9, 107, 126, 206, 406, 419
NmuCI	GTSAC	2 cut(s)	61, 224
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PdiI	GCCGGC	1 cut(s)	190
Pfl23II	CGTACG	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	7, 377
PspEI	GGTNACC	1 cut(s)	61
PspFI	CCCAGC	1 cut(s)	169
PspLI	CGTACG	1 cut(s)	150
PspN4I	GGNNCC	6 cut(s)	9, 107, 126, 206, 406, 419
PsuI	RGATCY	3 cut(s)	132, 204, 237
RsaI	GTAC	3 cut(s)	152, 341, 349
RsaNI	GTAC	3 cut(s)	151, 340, 348
SalI	GTCGAC	1 cut(s)	194
SatI	GCNGC	2 cut(s)	6, 376
Sau3AI	GATC	5 cut(s)	132, 204, 237, 318, 364
SduI	GDGCHC	3 cut(s)	110, 159, 384
SetI	ASST	6 cut(s)	68, 120, 226, 341, 415, 419
SfaNI	GCATC	1 cut(s)	267
SgrAI	CRCCGGYG	1 cut(s)	188
SsiI	CCGC	6 cut(s)	5, 53, 59, 82, 139, 208
SspMI	CTAG	1 cut(s)	414
StyI	CCWWGG	2 cut(s)	264, 368
TaaI	ACNGT	4 cut(s)	71, 182, 347, 434
TaqI	TCGA	2 cut(s)	114, 195
TauI	GCSGC	1 cut(s)	8
TscAI	CASTG	1 cut(s)	35
TseFI	GTSAC	2 cut(s)	61, 224
TseI	GCWGC	1 cut(s)	375
Tsp45I	GTSAC	2 cut(s)	61, 224
TspDTI	ATGAA	1 cut(s)	32
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	35
XcmI	CCANNNNNNNNNTGG	2 cut(s)	166, 271
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.