Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001512

Physical Location & Seq

Genomic Coordinates Forward (+)

28563871 .. 28565845

Gene Structure 1975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0270100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCAAGAAAAAGAAAGCCTTCCTTTTTCAAGGTTCTTATAGGTGACTTCTCTGACAAGCTGGCTTTTCGTAAGCATTTGGCTGCAAGTGTACTTCAACAATCCCATCTTCGGACCCCTGCTGGAACTTGGCTTGTTGATGTGAAAAGCGATAACGGCAGGTTCTTTTTACAAAAGGGTTGGAAGCAATTTGTGCATGATAATGGTTTAAAGCTTGGAGAGTTTCTAATTTTCCGATATACTGGAAATTCAAAATTCTATGTTGACATATATGGAAGACATGGTTGCAAAAAGGAGTTTGTAATGCCGGCTAGGAGTAGTGAAAAACCATTTAAAAAGAGGCACGGTAATGAAAGTCATAGAACAAACGCTGTTATGAGTTCCAGCATACATCCAAAGAAGAAGATGGATTATCAGAAGTTAAAAGGTTCAGCTGGTGAAAATAAAACTAGTCAAGAAACTATTTCCGTCAAATCTGAACCAATTGGTTTTGAATTGGAAACATCTATGGATATTGACGAGTCAATTAGAAATATGAATTCTAGAGAGACTTTGTCTTTCCAACCTCAAGTGGCAAATAGTGCTCTAGAAGCAGCCAACAGATACTCATCGAACCATCCTTGCTTCAGAACTCTTTTGACCGAAACTTATGTGACCAAAGGAATTCTGCATATACCATGTACCTTTGTGAAAGATTATATTAAGATAAAGAAAAGGACAGCTGAGCTTCAAGTTTCAAACAGGTTGTGGTCTGTGAAGTGGATTAATGACTCTCGCTCAAGTAGATTCTCTCAAGGTTGGAATGAGTTTGTAAGGCAGAATGATCTGAAAGTGGGAGATGTTTGTGTCTTTGAGCTGATTAAGCAGACGAATGATGTTGTGATGATGAAAGTTTCTTTTTTCAGACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

303

Amino Acids

35.05

Weight (kDa)

9.92

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	43 - 92	2.7e-12	B3 DNA binding domain
B3	PF02362	209 - 292	1.2e-15	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G09990 AT3G04230 AT5G18380 AT5G18380
fragaria_vesca	FvH4_2g05750
malus_domestica	MD05G1084000.v1.1 MD13G1187300.v1.1 MD16G1188000.v1.1
prunus_persica	Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.8G128300_v2.0.a1
pyrus_communis	pycom16g15800
rosa_chinensis	RchiOBHm_Chr2g0126911 RchiOBHm_Chr3g0469551 RchiOBHm_Chr4g0416971 RchiOBHm_Chr7g0205351
rosa_laevigata	RLG00000003385 RLG00000018927
rosa_multiflora	Rmu_co8452851.1_g000001 Rmu_sc0000007.1_g000029 Rmu_sc0007239.1_g000007 Rmu_sc0009725.1_g000007 Rmu_sc0022422.1_g000001 Rmu_ssc0000004.1_g000020 Rmu_ssc0000010.1_g000016
rosa_roxburghii	Rroxscaffold_2G00116930 Rroxscaffold_3G00252430 Rroxscaffold_5G00360850
rosa_rugosa	Rorug02G0270100 Rorug04G0145800 Rorug07G0090300 Rorug07G0289500 Rorug07G0320600
rosa_samantha	Rh1BG296000 Rh1DG328300 Rh2AG322400 Rh2BG330600 Rh2CG310500 Rh2DG349900 Rh4BG205400 Rh4CG219100 Rh4DG205800 Rh7AG220700 Rh7BG217000 Rh7BG274700 Rh7CG233700 Rh7DG227600
rosa_wichuraiana	Rw2G026150 Rw4G017650 Rw7G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	150
AcsI	RAATTY	4 cut(s)	247, 254, 538, 663
AcuI	CTGAAG	1 cut(s)	610
AfaI	GTAC	2 cut(s)	93, 682
AfiI	CCNNNNNNNGG	1 cut(s)	111
AgsI	TTSAA	6 cut(s)	31, 98, 252, 494, 731, 738
AhlI	ACTAGT	1 cut(s)	449
AluBI	AGCT	6 cut(s)	61, 214, 434, 722, 727, 856
AluI	AGCT	6 cut(s)	61, 214, 434, 722, 727, 856
Alw21I	GWGCWC	1 cut(s)	586
Alw26I	GTCTC	1 cut(s)	542
ApeKI	GCWGC	2 cut(s)	83, 593
ApoI	RAATTY	4 cut(s)	247, 254, 538, 663
AseI	ATTAAT	1 cut(s)	765
Asp700I	GAANNNNTTC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	114
AsuHPI	GGTGA	2 cut(s)	56, 449
AvaII	GGWCC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	586
BbvI	GCAGC	2 cut(s)	70, 605
BccI	CCATC	3 cut(s)	114, 400, 624
BceAI	ACGGC	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	542
BcuI	ACTAGT	1 cut(s)	449
BfaI	CTAG	4 cut(s)	312, 450, 543, 587
BfuAI	ACCTGC	1 cut(s)	150
BisI	GCNGC	2 cut(s)	84, 594
BlpI	GCTNAGC	1 cut(s)	723
BlsI	GCNGC	2 cut(s)	85, 595
Bme18I	GGWCC	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	283
Bpu1102I	GCTNAGC	1 cut(s)	723
BpuEI	CTTGAG	3 cut(s)	552, 763, 777
BsaBI	GATNNNNATC	1 cut(s)	607
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse118I	RCCGGY	1 cut(s)	307
Bse1I	ACTGG	1 cut(s)	247
Bse8I	GATNNNNATC	1 cut(s)	607
BseGI	GGATG	2 cut(s)	391, 616
BseJI	GATNNNNATC	1 cut(s)	607
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	714
BseNI	ACTGG	1 cut(s)	247
BseXI	GCAGC	2 cut(s)	70, 605
BsiHKAI	GWGCWC	1 cut(s)	586
BsiSI	CCGG	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	586
Bsp143I	GATC	1 cut(s)	823
Bsp1720I	GCTNAGC	1 cut(s)	723
BspCNI	CTCAG	1 cut(s)	715
BspLI	GGNNCC	1 cut(s)	116
BspMI	ACCTGC	1 cut(s)	150
BsrFI	RCCGGY	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	307
BssMI	GATC	1 cut(s)	823
Bst4CI	ACNGT	1 cut(s)	347
BstAPI	GCANNNNNTGC	2 cut(s)	193, 581
BstC8I	GCNNGC	2 cut(s)	63, 309
BstDEI	CTNAG	1 cut(s)	723
BstF5I	GGATG	2 cut(s)	391, 616
BstKTI	GATC	1 cut(s)	826
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	1 cut(s)	823
BstMWI	GCNNNNNNNGC	5 cut(s)	156, 193, 581, 590, 862
BstV1I	GCAGC	2 cut(s)	70, 605
BstV2I	GAAGAC	1 cut(s)	283
BtsCI	GGATG	2 cut(s)	391, 616
BveI	ACCTGC	1 cut(s)	150
Cac8I	GCNNGC	2 cut(s)	63, 309
Cfr10I	RCCGGY	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	92, 681
CviAII	CATG	3 cut(s)	197, 281, 678
CviQI	GTAC	2 cut(s)	92, 681
DdeI	CTNAG	1 cut(s)	723
DpnI	GATC	1 cut(s)	825
DpnII	GATC	1 cut(s)	823
DraI	TTTAAA	2 cut(s)	210, 334
Eco47I	GGWCC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	610
EcoRI	GAATTC	2 cut(s)	538, 663
FaeI	CATG	3 cut(s)	200, 284, 681
FalI	AAGNNNNNCTT	3 cut(s)	36, 8, 40
FatI	CATG	3 cut(s)	196, 280, 677
Fnu4HI	GCNGC	2 cut(s)	84, 594
FokI	GGATG	2 cut(s)	378, 603
Fsp4HI	GCNGC	2 cut(s)	84, 594
FspBI	CTAG	4 cut(s)	312, 450, 543, 587
GluI	GCNGC	2 cut(s)	84, 594
HapII	CCGG	1 cut(s)	308
Hin1II	CATG	3 cut(s)	200, 284, 681
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	3 cut(s)	521, 770, 786
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	2 cut(s)	56, 449
Hpy166II	GTNNAC	2 cut(s)	92, 265
Hpy188I	TCNGA	8 cut(s)	55, 114, 236, 417, 478, 629, 828, 905
Hpy188III	TCNNGA	3 cut(s)	455, 543, 587
Hpy8I	GTNNAC	2 cut(s)	92, 265
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4IV	ACGT	1 cut(s)	907
HpyCH4V	TGCA	4 cut(s)	86, 196, 288, 670
HpyF10VI	GCNNNNNNNGC	5 cut(s)	156, 193, 581, 590, 862
HpyF3I	CTNAG	1 cut(s)	723
HpySE526I	ACGT	1 cut(s)	907
Hsp92II	CATG	3 cut(s)	200, 284, 681
KroI	GCCGGC	1 cut(s)	307
KroNI	GCCGGC	1 cut(s)	309
Kzo9I	GATC	1 cut(s)	823
LpnPI	CCDG	9 cut(s)	47, 108, 132, 145, 228, 321, 397, 420, 727
Lsp1109I	GCAGC	2 cut(s)	70, 605
MaeI	CTAG	4 cut(s)	312, 450, 543, 587
MaeII	ACGT	1 cut(s)	907
MaeIII	GTNAC	2 cut(s)	44, 652
MalI	GATC	1 cut(s)	825
MboI	GATC	1 cut(s)	823
MboII	GAAGA	4 cut(s)	101, 288, 412, 415
MfeI	CAATTG	1 cut(s)	483
MhlI	GDGCHC	1 cut(s)	586
MluCI	AATT	9 cut(s)	188, 228, 247, 254, 483, 494, 525, 538, 663
MlyI	GAGTC	2 cut(s)	530, 764
MmeI	TCCRAC	3 cut(s)	161, 586, 779
MnlI	CCTC	2 cut(s)	333, 576
MroNI	GCCGGC	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	19
MseI	TTAA	6 cut(s)	209, 333, 422, 702, 765, 861
MslI	CAYNNNNRTG	2 cut(s)	201, 348
MspA1I	CMGCKG	2 cut(s)	434, 722
MspI	CCGG	1 cut(s)	308
MunI	CAATTG	1 cut(s)	483
MwoI	GCNNNNNNNGC	5 cut(s)	156, 193, 581, 590, 862
NaeI	GCCGGC	1 cut(s)	309
NdeII	GATC	1 cut(s)	823
NgoMIV	GCCGGC	1 cut(s)	307
NlaIII	CATG	3 cut(s)	200, 284, 681
NlaIV	GGNNCC	1 cut(s)	116
NmuCI	GTSAC	2 cut(s)	44, 652
PdiI	GCCGGC	1 cut(s)	309
PdmI	GAANNNNTTC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	786
PflFI	GACNNNGTC	1 cut(s)	553
PkrI	GCNGC	2 cut(s)	85, 595
PleI	GAGTC	2 cut(s)	529, 764
PpsI	GAGTC	2 cut(s)	529, 764
PshBI	ATTAAT	1 cut(s)	765
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	114
PsyI	GACNNNGTC	1 cut(s)	553
PvuII	CAGCTG	2 cut(s)	434, 722
RsaI	GTAC	2 cut(s)	93, 682
RsaNI	GTAC	2 cut(s)	92, 681
RseI	CAYNNNNRTG	2 cut(s)	201, 348
SaqAI	TTAA	6 cut(s)	209, 333, 422, 702, 765, 861
SatI	GCNGC	2 cut(s)	84, 594
Sau3AI	GATC	1 cut(s)	823
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	2 cut(s)	530, 764
SduI	GDGCHC	1 cut(s)	586
SinI	GGWCC	1 cut(s)	114
SmiMI	CAYNNNNRTG	2 cut(s)	201, 348
SmlI	CTYRAG	3 cut(s)	567, 778, 792
SmoI	CTYRAG	3 cut(s)	567, 778, 792
SpeI	ACTAGT	1 cut(s)	449
Sse9I	AATT	9 cut(s)	188, 228, 247, 254, 483, 494, 525, 538, 663
SspMI	CTAG	4 cut(s)	312, 450, 543, 587
TaaI	ACNGT	1 cut(s)	347
TaiI	ACGT	1 cut(s)	910
TaqI	TCGA	1 cut(s)	611
TaqII	GACCGA	1 cut(s)	656
TasI	AATT	9 cut(s)	188, 228, 247, 254, 483, 494, 525, 538, 663
TatI	WGTACW	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	786
Tru1I	TTAA	6 cut(s)	209, 333, 422, 702, 765, 861
Tru9I	TTAA	6 cut(s)	209, 333, 422, 702, 765, 861
TseFI	GTSAC	2 cut(s)	44, 652
TseI	GCWGC	2 cut(s)	83, 593
Tsp45I	GTSAC	2 cut(s)	44, 652
TspDTI	ATGAA	3 cut(s)	366, 551, 902
TspGWI	ACGGA	1 cut(s)	457
Tth111I	GACNNNGTC	1 cut(s)	553
VpaK11BI	GGWCC	1 cut(s)	114
VspI	ATTAAT	1 cut(s)	765
XapI	RAATTY	4 cut(s)	247, 254, 538, 663
XbaI	TCTAGA	2 cut(s)	542, 586
XmnI	GAANNNNTTC	1 cut(s)	19
XspI	CTAG	4 cut(s)	312, 450, 543, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.