Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001512

Physical Location & Seq

Genomic Coordinates Forward (+)

55327954 .. 55328478

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG328300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCGGCTCCCCCAATCAAATCGATCCAGTGCTTTGGCCGCAAGAAGACGACGGTGGCCGTCACCTACTGCAAGGAAGGCCGCGGCTTGATCAAGATCAACGGCTGCCCAATCAAGCTCGTGGAGCTGGAGATCCTCCGCTTCAAGGCCTACGAGCCCATCCTTCTGCTCGGACGACACCGTTTCGCCGGCGTCGACATGAGGATCCACGTCAAGGGAGGAGGTCACACTTCTCAGATCTACGCCATCCGTCAGAGCATCGCCAAGGCCTTGGTCGCTTATTACCAGAAGTTCGTGGATGAGCAGAGCAAGAAGGAAATCAAGGACATTCTCGTCATGTATGACCGTACTCTCCTCGTCGTTGATCCAAGGCGCTGCGAGCCAGAGCTAGGTTTCGAGTGGCTGGTGTTGTCAATTTCGAATCGCGCCTTTCGGAGACGGACTGATTCGGACCAGATTTGTATGAGGCGGTGGAGGGTGCGGTTGGGCACGAAGTCCCAGATGAGGCGGTGGAGGGTGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

174

Amino Acids

20.35

Weight (kDa)

10.34

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S9	PF00380	13 - 128	2.3e-26	Ribosomal protein S9/S16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G09990 AT3G04230 AT5G18380 AT5G18380
fragaria_vesca	FvH4_2g05750
malus_domestica	MD05G1084000.v1.1 MD13G1187300.v1.1 MD16G1188000.v1.1
prunus_persica	Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.8G128300_v2.0.a1
pyrus_communis	pycom16g15800
rosa_chinensis	RchiOBHm_Chr2g0126911 RchiOBHm_Chr3g0469551 RchiOBHm_Chr4g0416971 RchiOBHm_Chr7g0205351
rosa_laevigata	RLG00000003385 RLG00000018927
rosa_multiflora	Rmu_co8452851.1_g000001 Rmu_sc0000007.1_g000029 Rmu_sc0007239.1_g000007 Rmu_sc0009725.1_g000007 Rmu_sc0022422.1_g000001 Rmu_ssc0000004.1_g000020 Rmu_ssc0000010.1_g000016
rosa_roxburghii	Rroxscaffold_2G00116930 Rroxscaffold_3G00252430 Rroxscaffold_5G00360850
rosa_rugosa	Rorug02G0270100 Rorug04G0145800 Rorug07G0090300 Rorug07G0289500 Rorug07G0320600
rosa_samantha	Rh1BG296000 Rh1DG328300 Rh2AG322400 Rh2BG330600 Rh2CG310500 Rh2DG349900 Rh4BG205400 Rh4CG219100 Rh4DG205800 Rh7AG220700 Rh7BG217000 Rh7BG274700 Rh7CG233700 Rh7DG227600
rosa_wichuraiana	Rw2G026150 Rw4G017650 Rw7G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	332
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	2 cut(s)	84, 426
AciI	CCGC	8 cut(s)	5, 40, 82, 84, 139, 469, 481, 508
AclWI	GGATC	5 cut(s)	19, 127, 199, 212, 359
AcoI	YGGCCR	2 cut(s)	37, 57
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	4 cut(s)	145, 214, 389, 504
AgsI	TTSAA	1 cut(s)	145
AjiI	CACGTC	1 cut(s)	211
AluBI	AGCT	3 cut(s)	118, 127, 388
AluI	AGCT	3 cut(s)	118, 127, 388
Alw26I	GTCTC	1 cut(s)	430
AlwI	GGATC	5 cut(s)	19, 127, 199, 212, 359
AoxI	GGCC	5 cut(s)	37, 57, 79, 147, 267
ApeKI	GCWGC	2 cut(s)	105, 375
AspLEI	GCGC	2 cut(s)	375, 428
AspS9I	GGNCC	1 cut(s)	451
AsuHPI	GGTGA	1 cut(s)	55
AsuII	TTCGAA	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	451
BaeGI	GKGCMC	1 cut(s)	491
BamHI	GGATCC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	159
BauI	CACGAG	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	92, 362
BccI	CCATC	2 cut(s)	167, 254
BceAI	ACGGC	2 cut(s)	44, 118
BclI	TGATCA	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	430
BfaI	CTAG	1 cut(s)	389
BfoI	RGCGCY	1 cut(s)	376
BglII	AGATCT	1 cut(s)	237
BisI	GCNGC	6 cut(s)	6, 40, 82, 85, 106, 376
BlsI	GCNGC	6 cut(s)	7, 41, 83, 86, 107, 377
Bme18I	GGWCC	1 cut(s)	451
BmgBI	CACGTC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	2 cut(s)	9, 206
BmsI	GCATC	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	53
BpmI	CTGGAG	1 cut(s)	149
Bpu14I	TTCGAA	1 cut(s)	419
Bsa29I	ATCGAT	1 cut(s)	23
BsaBI	GATNNNNATC	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	4 cut(s)	82, 264, 270, 368
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 214, 389, 504
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	28
Bse8I	GATNNNNATC	1 cut(s)	95
BseCI	ATCGAT	1 cut(s)	23
BseDI	CCNNGG	4 cut(s)	82, 264, 270, 368
BseGI	GGATG	3 cut(s)	159, 246, 304
BseJI	GATNNNNATC	1 cut(s)	95
BseLI	CCNNNNNNNGG	4 cut(s)	145, 214, 389, 504
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	2 cut(s)	234, 344
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	2 cut(s)	92, 362
Bsh1236I	CGCG	2 cut(s)	84, 426
BshFI	GGCC	5 cut(s)	39, 59, 81, 149, 269
BshVI	ATCGAT	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	481
BslI	CCNNNNNNNGG	4 cut(s)	145, 214, 389, 504
BsmAI	GTCTC	1 cut(s)	430
BsmBI	CGTCTC	1 cut(s)	430
BsmFI	GGGAC	1 cut(s)	481
BsnI	GGCC	5 cut(s)	39, 59, 81, 149, 269
Bsp119I	TTCGAA	1 cut(s)	419
Bsp1286I	GDGCHC	2 cut(s)	159, 491
Bsp143I	GATC	7 cut(s)	24, 90, 96, 132, 204, 237, 364
BspACI	CCGC	8 cut(s)	5, 40, 82, 84, 139, 469, 481, 508
BspANI	GGCC	5 cut(s)	39, 59, 81, 149, 269
BspCNI	CTCAG	1 cut(s)	247
BspDI	ATCGAT	1 cut(s)	23
BspFNI	CGCG	2 cut(s)	84, 426
BspLI	GGNNCC	2 cut(s)	9, 206
BspPI	GGATC	5 cut(s)	19, 127, 199, 212, 359
BspT104I	TTCGAA	1 cut(s)	419
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	4 cut(s)	82, 264, 270, 368
BssMI	GATC	7 cut(s)	24, 90, 96, 132, 204, 237, 364
BssNI	GRCGYC	1 cut(s)	192
BssSI	CACGAG	1 cut(s)	119
BssT1I	CCWWGG	3 cut(s)	264, 270, 368
Bst2BI	CACGAG	1 cut(s)	119
Bst4CI	ACNGT	3 cut(s)	55, 182, 347
BstACI	GRCGYC	1 cut(s)	192
BstBI	TTCGAA	1 cut(s)	419
BstC8I	GCNNGC	2 cut(s)	190, 380
BstDEI	CTNAG	1 cut(s)	234
BstDSI	CCRYGG	1 cut(s)	82
BstF5I	GGATG	3 cut(s)	159, 246, 304
BstFNI	CGCG	2 cut(s)	84, 426
BstH2I	RGCGCY	1 cut(s)	376
BstHHI	GCGC	2 cut(s)	375, 428
BstKTI	GATC	7 cut(s)	27, 93, 99, 135, 207, 240, 367
BstMAI	GTCTC	1 cut(s)	430
BstMBI	GATC	7 cut(s)	24, 90, 96, 132, 204, 237, 364
BstMWI	GCNNNNNNNGC	5 cut(s)	39, 78, 124, 275, 379
BstSLI	GKGCMC	1 cut(s)	491
BstUI	CGCG	2 cut(s)	84, 426
BstV1I	GCAGC	2 cut(s)	92, 362
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	3 cut(s)	132, 204, 237
BstXI	CCANNNNNNTGG	2 cut(s)	35, 271
BstYI	RGATCY	3 cut(s)	132, 204, 237
Bsu15I	ATCGAT	1 cut(s)	23
BsuRI	GGCC	5 cut(s)	39, 59, 81, 149, 269
BsuTUI	ATCGAT	1 cut(s)	23
BtgI	CCRYGG	1 cut(s)	82
BtgZI	GCGATG	1 cut(s)	244
BtrI	CACGTC	1 cut(s)	211
BtsCI	GGATG	3 cut(s)	159, 246, 304
BtsIMutI	CAGTG	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	190, 380
CfoI	GCGC	2 cut(s)	375, 428
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	451
Cfr42I	CCGCGG	1 cut(s)	85
ClaI	ATCGAT	1 cut(s)	23
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	2 cut(s)	199, 337
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	7 cut(s)	26, 92, 98, 134, 206, 239, 366
DpnII	GATC	7 cut(s)	24, 90, 96, 132, 204, 237, 364
DrdI	GACNNNNNNGTC	1 cut(s)	332
DseDI	GACNNNNNNGTC	1 cut(s)	332
EaeI	YGGCCR	2 cut(s)	37, 57
Eco130I	CCWWGG	3 cut(s)	264, 270, 368
Eco147I	AGGCCT	2 cut(s)	149, 269
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	451
EcoT14I	CCWWGG	3 cut(s)	264, 270, 368
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	3 cut(s)	264, 270, 368
Esp3I	CGTCTC	1 cut(s)	430
FaeI	CATG	2 cut(s)	202, 340
FaiI	YATR	4 cut(s)	200, 338, 342, 464
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	2 cut(s)	198, 336
FbaI	TGATCA	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	6 cut(s)	6, 40, 82, 85, 106, 376
FokI	GGATG	3 cut(s)	146, 233, 311
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	6 cut(s)	6, 40, 82, 85, 106, 376
FspBI	CTAG	1 cut(s)	389
GlaI	GCGC	2 cut(s)	374, 427
GluI	GCNGC	6 cut(s)	6, 40, 82, 85, 106, 376
GsuI	CTGGAG	1 cut(s)	149
HaeII	RGCGCY	1 cut(s)	376
HaeIII	GGCC	5 cut(s)	39, 59, 81, 149, 269
HapII	CCGG	1 cut(s)	189
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	2 cut(s)	375, 428
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	202, 340
Hin6I	GCGC	2 cut(s)	373, 426
HinP1I	GCGC	2 cut(s)	373, 426
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	421, 446
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	5 cut(s)	173, 237, 255, 435, 451
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	3 cut(s)	55, 197, 362
HpyAV	CCTTC	3 cut(s)	71, 173, 307
HpyCH4III	ACNGT	3 cut(s)	55, 182, 347
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	5 cut(s)	39, 78, 124, 275, 379
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	210
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	202, 340
HspAI	GCGC	2 cut(s)	373, 426
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Ksp22I	TGATCA	1 cut(s)	90
KspI	CCGCGG	1 cut(s)	85
Kzo9I	GATC	7 cut(s)	24, 90, 96, 132, 204, 237, 364
LmnI	GCTCC	2 cut(s)	13, 124
LpnPI	CCDG	8 cut(s)	41, 113, 202, 299, 389, 396, 467, 512
Lsp1109I	GCAGC	2 cut(s)	92, 362
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	2 cut(s)	61, 224
MalI	GATC	7 cut(s)	26, 92, 98, 134, 206, 239, 366
MboI	GATC	7 cut(s)	24, 90, 96, 132, 204, 237, 364
MboII	GAAGA	1 cut(s)	58
MflI	RGATCY	3 cut(s)	132, 204, 237
MhlI	GDGCHC	2 cut(s)	159, 491
MluCI	AATT	1 cut(s)	414
MnlI	CCTC	9 cut(s)	146, 195, 212, 215, 365, 459, 468, 498, 507
MreI	CGCCGGCG	1 cut(s)	188
MroNI	GCCGGC	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	84
MspI	CCGG	1 cut(s)	189
MvnI	CGCG	2 cut(s)	84, 426
MwoI	GCNNNNNNNGC	5 cut(s)	39, 78, 124, 275, 379
NaeI	GCCGGC	1 cut(s)	190
NdeII	GATC	7 cut(s)	24, 90, 96, 132, 204, 237, 364
NgoMIV	GCCGGC	1 cut(s)	188
NlaIII	CATG	2 cut(s)	202, 340
NlaIV	GGNNCC	2 cut(s)	9, 206
NmuCI	GTSAC	2 cut(s)	61, 224
NspV	TTCGAA	1 cut(s)	419
PceI	AGGCCT	2 cut(s)	149, 269
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PdiI	GCCGGC	1 cut(s)	190
PfeI	GAWTC	2 cut(s)	421, 446
PkrI	GCNGC	6 cut(s)	7, 41, 83, 86, 107, 377
PspN4I	GGNNCC	2 cut(s)	9, 206
PspPI	GGNCC	1 cut(s)	451
PsuI	RGATCY	3 cut(s)	132, 204, 237
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SacII	CCGCGG	1 cut(s)	85
SalI	GTCGAC	1 cut(s)	194
SatI	GCNGC	6 cut(s)	6, 40, 82, 85, 106, 376
Sau3AI	GATC	7 cut(s)	24, 90, 96, 132, 204, 237, 364
Sau96I	GGNCC	1 cut(s)	451
SduI	GDGCHC	2 cut(s)	159, 491
SetI	ASST	7 cut(s)	68, 120, 129, 213, 226, 390, 394
SfaNI	GCATC	1 cut(s)	267
Sfr303I	CCGCGG	1 cut(s)	85
SfuI	TTCGAA	1 cut(s)	419
SgrAI	CRCCGGYG	1 cut(s)	188
SgrBI	CCGCGG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	451
Sse9I	AATT	1 cut(s)	414
SseBI	AGGCCT	2 cut(s)	149, 269
SsiI	CCGC	8 cut(s)	5, 40, 82, 84, 139, 469, 481, 508
SspMI	CTAG	1 cut(s)	389
StuI	AGGCCT	2 cut(s)	149, 269
StyI	CCWWGG	3 cut(s)	264, 270, 368
TaaI	ACNGT	3 cut(s)	55, 182, 347
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	4 cut(s)	23, 195, 396, 419
TasI	AATT	1 cut(s)	414
TauI	GCSGC	4 cut(s)	8, 42, 84, 87
TfiI	GAWTC	2 cut(s)	421, 446
TscAI	CASTG	1 cut(s)	35
TseFI	GTSAC	2 cut(s)	61, 224
TseI	GCWGC	2 cut(s)	105, 375
Tsp45I	GTSAC	2 cut(s)	61, 224
TspGWI	ACGGA	2 cut(s)	239, 454
TspRI	CASTG	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.