Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001512

Physical Location & Seq

Genomic Coordinates Forward (+)

3781328 .. 3782335

Gene Structure 1008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G09990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCGACACAACCAGCTACTGAATCTGTGCAATGCTTCGGAAGGAAGAAGACCGCAGTGGCCGTCACTCACTGCAAGCGTGGATCTGGTTTAATTAAGCTCAACGGTTGCCCAATCGAGCTTTTCCAGCCAGAGATCCTCCGATTCAAGATCTTCGAGCCGATTCTTCTCCTCGGAAAGCACCGTTTCGCAGGTGTGAACATGAGGATCCGTGTCAACGGTGGTGGTCACACATCACAGGTTTACGCCATCCGTCAGAGTATCGCGAAGGCTCTTGTTGCGTACTACCAGAAGTATGTGGATGAGCAGTCGAAGAAGGAGATTAAAGATATCTTGGTGAGGTATGATAGGACTCTGCTTGTGGCGGATCCGAGGAGGTGTGAGCCGAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTCGTTACCAGAAGAGTTACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0030490 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

146

Amino Acids

16.63

Weight (kDa)

10.21

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S9	PF00380	14 - 146	2.6e-37	Ribosomal protein S9/S16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G09990 AT3G04230 AT5G18380 AT5G18380
fragaria_vesca	FvH4_2g05750
malus_domestica	MD05G1084000.v1.1 MD13G1187300.v1.1 MD16G1188000.v1.1
prunus_persica	Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.8G128300_v2.0.a1
pyrus_communis	pycom16g15800
rosa_chinensis	RchiOBHm_Chr2g0126911 RchiOBHm_Chr3g0469551 RchiOBHm_Chr4g0416971 RchiOBHm_Chr7g0205351
rosa_laevigata	RLG00000003385 RLG00000018927
rosa_multiflora	Rmu_co8452851.1_g000001 Rmu_sc0000007.1_g000029 Rmu_sc0007239.1_g000007 Rmu_sc0009725.1_g000007 Rmu_sc0022422.1_g000001 Rmu_ssc0000004.1_g000020 Rmu_ssc0000010.1_g000016
rosa_roxburghii	Rroxscaffold_2G00116930 Rroxscaffold_3G00252430 Rroxscaffold_5G00360850
rosa_rugosa	Rorug02G0270100 Rorug04G0145800 Rorug07G0090300 Rorug07G0289500 Rorug07G0320600
rosa_samantha	Rh1BG296000 Rh1DG328300 Rh2AG322400 Rh2BG330600 Rh2CG310500 Rh2DG349900 Rh4BG205400 Rh4CG219100 Rh4DG205800 Rh7AG220700 Rh7BG217000 Rh7BG274700 Rh7CG233700 Rh7DG227600
rosa_wichuraiana	Rw2G026150 Rw4G017650 Rw7G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	182
Acc36I	ACCTGC	1 cut(s)	182
AccII	CGCG	1 cut(s)	266
AciI	CCGC	2 cut(s)	54, 365
AclWI	GGATC	6 cut(s)	91, 130, 202, 215, 362, 375
AcoI	YGGCCR	1 cut(s)	60
AfaI	GTAC	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	148
AluBI	AGCT	3 cut(s)	17, 100, 121
AluI	AGCT	3 cut(s)	17, 100, 121
Alw21I	GWGCWC	1 cut(s)	412
AlwI	GGATC	6 cut(s)	91, 130, 202, 215, 362, 375
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	349
BamHI	GGATCC	2 cut(s)	207, 367
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	412
BccI	CCATC	1 cut(s)	257
BceAI	ACGGC	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	182
BglII	AGATCT	1 cut(s)	150
BmiI	GGNNCC	2 cut(s)	209, 369
BpiI	GAAGAC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	172, 371
Bse3DI	GCAATG	1 cut(s)	38
BseDI	CCNNGG	2 cut(s)	172, 371
BseGI	GGATG	2 cut(s)	249, 307
BseMI	GCAATG	1 cut(s)	38
BseRI	GAGGAG	2 cut(s)	161, 388
Bsh1236I	CGCG	1 cut(s)	266
BshFI	GGCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	412
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp143I	GATC	5 cut(s)	83, 135, 150, 207, 367
Bsp68I	TCGCGA	1 cut(s)	266
BspACI	CCGC	2 cut(s)	54, 365
BspANI	GGCC	1 cut(s)	62
BspFNI	CGCG	1 cut(s)	266
BspLI	GGNNCC	2 cut(s)	209, 369
BspMI	ACCTGC	1 cut(s)	182
BspPI	GGATC	6 cut(s)	91, 130, 202, 215, 362, 375
BsrDI	GCAATG	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	172, 371
BssMI	GATC	5 cut(s)	83, 135, 150, 207, 367
Bst4CI	ACNGT	4 cut(s)	107, 185, 221, 437
Bst6I	CTCTTC	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	77
BstF5I	GGATG	2 cut(s)	249, 307
BstFNI	CGCG	1 cut(s)	266
BstKTI	GATC	5 cut(s)	86, 138, 153, 210, 370
BstMBI	GATC	5 cut(s)	83, 135, 150, 207, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 278
BstUI	CGCG	1 cut(s)	266
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	5 cut(s)	83, 135, 150, 207, 367
BstYI	RGATCY	5 cut(s)	83, 135, 150, 207, 367
BsuRI	GGCC	1 cut(s)	62
BtsCI	GGATG	2 cut(s)	249, 307
BtsI	GCAGTG	2 cut(s)	63, 70
BtsIMutI	CAGTG	2 cut(s)	63, 70
BtuMI	TCGCGA	1 cut(s)	266
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	77
CaiI	CAGNNNCTG	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	283
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	8 cut(s)	17, 62, 100, 121, 130, 160, 272, 385
CviKI_1	RGCY	8 cut(s)	17, 62, 100, 121, 130, 160, 272, 385
CviQI	GTAC	1 cut(s)	283
DpnI	GATC	5 cut(s)	85, 137, 152, 209, 369
DpnII	GATC	5 cut(s)	83, 135, 150, 207, 367
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
EciI	GGCGGA	1 cut(s)	380
Eco32I	GATATC	1 cut(s)	331
EcoRV	GATATC	1 cut(s)	331
FaeI	CATG	1 cut(s)	205
FaiI	YATR	3 cut(s)	203, 297, 345
FatI	CATG	1 cut(s)	201
FokI	GGATG	2 cut(s)	236, 314
HaeIII	GGCC	1 cut(s)	62
Hin1II	CATG	1 cut(s)	205
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	4 cut(s)	23, 144, 163, 352
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	3 cut(s)	199, 217, 244
Hpy188I	TCNGA	5 cut(s)	41, 143, 176, 258, 372
Hpy188III	TCNNGA	2 cut(s)	148, 265
Hpy8I	GTNNAC	3 cut(s)	199, 217, 244
HpyAV	CCTTC	3 cut(s)	36, 262, 310
HpyCH4III	ACNGT	4 cut(s)	107, 185, 221, 437
HpyCH4V	TGCA	2 cut(s)	31, 75
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 278
Hsp92II	CATG	1 cut(s)	205
Kzo9I	GATC	5 cut(s)	83, 135, 150, 207, 367
LpnPI	CCDG	8 cut(s)	27, 72, 140, 144, 177, 224, 302, 437
MaeIII	GTNAC	4 cut(s)	64, 227, 419, 431
MalI	GATC	5 cut(s)	85, 137, 152, 209, 369
MboI	GATC	5 cut(s)	83, 135, 150, 207, 367
MboII	GAAGA	7 cut(s)	58, 61, 145, 158, 325, 400, 439
MflI	RGATCY	5 cut(s)	83, 135, 150, 207, 367
MhlI	GDGCHC	1 cut(s)	412
MluCI	AATT	1 cut(s)	93
MlyI	GAGTC	1 cut(s)	346
MnlI	CCTC	6 cut(s)	149, 182, 198, 333, 366, 369
MseI	TTAA	4 cut(s)	92, 96, 324, 439
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	2 cut(s)	127, 278
NdeII	GATC	5 cut(s)	83, 135, 150, 207, 367
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	2 cut(s)	209, 369
NmuCI	GTSAC	2 cut(s)	64, 227
NruI	TCGCGA	1 cut(s)	266
PacI	TTAATTAA	1 cut(s)	96
PaqCI	CACCTGC	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	1 cut(s)	409
PfeI	GAWTC	3 cut(s)	23, 144, 163
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PspN4I	GGNNCC	2 cut(s)	209, 369
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	5 cut(s)	83, 135, 150, 207, 367
RruI	TCGCGA	1 cut(s)	266
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SaqAI	TTAA	4 cut(s)	92, 96, 324, 439
Sau3AI	GATC	5 cut(s)	83, 135, 150, 207, 367
SchI	GAGTC	1 cut(s)	346
SduI	GDGCHC	1 cut(s)	412
SetI	ASST	7 cut(s)	19, 102, 123, 196, 243, 344, 380
Sse9I	AATT	1 cut(s)	93
SsiI	CCGC	2 cut(s)	54, 365
TaaI	ACNGT	4 cut(s)	107, 185, 221, 437
TaqI	TCGA	3 cut(s)	117, 156, 311
TasI	AATT	1 cut(s)	93
TfiI	GAWTC	3 cut(s)	23, 144, 163
Tru1I	TTAA	4 cut(s)	92, 96, 324, 439
Tru9I	TTAA	4 cut(s)	92, 96, 324, 439
TscAI	CASTG	2 cut(s)	63, 77
TseFI	GTSAC	2 cut(s)	64, 227
Tsp45I	GTSAC	2 cut(s)	64, 227
TspGWI	ACGGA	2 cut(s)	200, 242
TspRI	CASTG	2 cut(s)	63, 77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.