Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001512

Physical Location & Seq

Genomic Coordinates Reverse (-)

12211182 .. 12213416

Gene Structure 2235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G154800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCGACCCCAGCTATAGAGTCCGTTCAGTGCTTTGGCCGAAAGAAGACGGCGGTGGCAGTGACCTACTGCAAGCGGGGACGCGGCCTGATCAAGATCAACGGCTGTCCGATCGAGCTGGTGGAGCCGGAGATCCTCCGGTTCAAGGCCTACGAGCCGATCCTTCTGCTCGGACGACACCGTTTCGCCGGCGTCGACATGAGGATCCGTGTCAAAGGTGGAGGCCACACGTCTCAGATCTACGCAATCCGCCAGAGCATCGCCAAGGCCCTTGTGGCGTTTTACCAGAAGTATGTGGACGAACAGAGCAAGAAGGAGATCAAGGACATCTTGGTCAGGTACGACAGAACTCTCCTCGTCGCTGATCCCAGGCGCTGCGAGCCCAAGAAGTTCGGTGGTCGCGGTGCCAGAGCTAGGTTCCAGAAGTCTTACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

146

Amino Acids

16.55

Weight (kDa)

10.21

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G09990 AT3G04230 AT5G18380 AT5G18380
fragaria_vesca	FvH4_2g05750
malus_domestica	MD05G1084000.v1.1 MD13G1187300.v1.1 MD16G1188000.v1.1
prunus_persica	Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.8G128300_v2.0.a1
pyrus_communis	pycom16g15800
rosa_chinensis	RchiOBHm_Chr2g0126911 RchiOBHm_Chr3g0469551 RchiOBHm_Chr4g0416971 RchiOBHm_Chr7g0205351
rosa_laevigata	RLG00000003385 RLG00000018927
rosa_multiflora	Rmu_co8452851.1_g000001 Rmu_sc0000007.1_g000029 Rmu_sc0007239.1_g000007 Rmu_sc0009725.1_g000007 Rmu_sc0022422.1_g000001 Rmu_ssc0000004.1_g000020 Rmu_ssc0000010.1_g000016
rosa_roxburghii	Rroxscaffold_2G00116930 Rroxscaffold_3G00252430 Rroxscaffold_5G00360850
rosa_rugosa	Rorug02G0270100 Rorug04G0145800 Rorug07G0090300 Rorug07G0289500 Rorug07G0320600
rosa_samantha	Rh1BG296000 Rh1DG328300 Rh2AG322400 Rh2BG330600 Rh2CG310500 Rh2DG349900 Rh4BG205400 Rh4CG219100 Rh4DG205800 Rh7AG220700 Rh7BG217000 Rh7BG274700 Rh7CG233700 Rh7DG227600
rosa_wichuraiana	Rw2G026150 Rw4G017650 Rw7G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	332
AccB1I	GGYRCC	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	2 cut(s)	84, 402
AciI	CCGC	5 cut(s)	53, 76, 84, 250, 402
AclWI	GGATC	5 cut(s)	127, 154, 199, 212, 359
AcoI	YGGCCR	1 cut(s)	37
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	145, 414
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	145
AjiI	CACGTC	1 cut(s)	231
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	3 cut(s)	14, 118, 413
AluI	AGCT	3 cut(s)	14, 118, 413
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	5 cut(s)	127, 154, 199, 212, 359
AlwNI	CAGNNNCTG	1 cut(s)	375
AoxI	GGCC	5 cut(s)	37, 85, 147, 223, 267
ApeKI	GCWGC	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	375
AspS9I	GGNCC	1 cut(s)	268
BamHI	GGATCC	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	384
BbsI	GAAGAC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	362
BceAI	ACGGC	2 cut(s)	66, 118
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BciT130I	CCWGG	1 cut(s)	370
BclI	TGATCA	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	1 cut(s)	414
BfmI	CTRYAG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	376
BglI	GCCNNNNNGGC	1 cut(s)	275
BglII	AGATCT	1 cut(s)	237
BisI	GCNGC	2 cut(s)	85, 376
BlsI	GCNGC	2 cut(s)	86, 377
Bme1390I	CCNGG	1 cut(s)	370
BmgBI	CACGTC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	4 cut(s)	126, 206, 406, 419
BmrFI	CCNGG	1 cut(s)	370
BmsI	GCATC	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	264, 368
BsaWI	WCCGGW	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 414
Bse118I	RCCGGY	1 cut(s)	188
Bse8I	GATNNNNATC	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	2 cut(s)	264, 368
BseJI	GATNNNNATC	1 cut(s)	95
BseLI	CCNNNNNNNGG	2 cut(s)	145, 414
BseMII	CTCAG	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	362
BseYI	CCCAGC	1 cut(s)	10
Bsh1236I	CGCG	2 cut(s)	84, 402
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	5 cut(s)	39, 87, 149, 225, 269
BshNI	GGYRCC	1 cut(s)	404
BsiEI	CGRYCG	1 cut(s)	114
BsiSI	CCGG	3 cut(s)	128, 139, 189
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	145, 414
BsmAI	GTCTC	1 cut(s)	237
BsmBI	CGTCTC	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	93
BsnI	GGCC	5 cut(s)	39, 87, 149, 225, 269
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	9 cut(s)	90, 96, 111, 132, 159, 204, 237, 318, 364
BspACI	CCGC	5 cut(s)	53, 76, 84, 250, 402
BspANI	GGCC	5 cut(s)	39, 87, 149, 225, 269
BspCNI	CTCAG	1 cut(s)	247
BspFNI	CGCG	2 cut(s)	84, 402
BspLI	GGNNCC	4 cut(s)	126, 206, 406, 419
BspPI	GGATC	5 cut(s)	127, 154, 199, 212, 359
BspT107I	GGYRCC	1 cut(s)	404
BsrFI	RCCGGY	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	264, 368
BssMI	GATC	9 cut(s)	90, 96, 111, 132, 159, 204, 237, 318, 364
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	2 cut(s)	182, 434
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	3 cut(s)	74, 190, 380
BstDEI	CTNAG	1 cut(s)	234
BstFNI	CGCG	2 cut(s)	84, 402
BstH2I	RGCGCY	1 cut(s)	376
BstHHI	GCGC	1 cut(s)	375
BstKTI	GATC	9 cut(s)	93, 99, 114, 135, 162, 207, 240, 321, 367
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	9 cut(s)	90, 96, 111, 132, 159, 204, 237, 318, 364
BstMCI	CGRYCG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 124, 275, 379
BstNI	CCWGG	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	15
BstUI	CGCG	2 cut(s)	84, 402
BstV1I	GCAGC	1 cut(s)	362
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	3 cut(s)	132, 204, 237
BstYI	RGATCY	3 cut(s)	132, 204, 237
BsuRI	GGCC	5 cut(s)	39, 87, 149, 225, 269
BtgZI	GCGATG	1 cut(s)	244
BtrI	CACGTC	1 cut(s)	231
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	35, 66
Cac8I	GCNNGC	3 cut(s)	74, 190, 380
CaiI	CAGNNNCTG	1 cut(s)	375
CfoI	GCGC	1 cut(s)	375
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	268
CseI	GACGC	2 cut(s)	90, 181
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	1 cut(s)	199
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	9 cut(s)	92, 98, 113, 134, 161, 206, 239, 320, 366
DpnII	GATC	9 cut(s)	90, 96, 111, 132, 159, 204, 237, 318, 364
DrdI	GACNNNNNNGTC	1 cut(s)	332
DseDI	GACNNNNNNGTC	1 cut(s)	332
EaeI	YGGCCR	1 cut(s)	37
EciI	GGCGGA	1 cut(s)	239
Eco130I	CCWWGG	1 cut(s)	264
Eco147I	AGGCCT	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	384
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	264
Esp3I	CGTCTC	1 cut(s)	237
FaeI	CATG	1 cut(s)	202
FaiI	YATR	3 cut(s)	17, 200, 294
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	1 cut(s)	198
FauI	CCCGC	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	2 cut(s)	85, 376
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	2 cut(s)	85, 376
FspBI	CTAG	1 cut(s)	414
GlaI	GCGC	1 cut(s)	374
GluI	GCNGC	2 cut(s)	85, 376
GsaI	CCCAGC	1 cut(s)	14
HaeII	RGCGCY	1 cut(s)	376
HaeIII	GGCC	5 cut(s)	39, 87, 149, 225, 269
HapII	CCGG	3 cut(s)	128, 139, 189
HgaI	GACGC	2 cut(s)	90, 181
HhaI	GCGC	1 cut(s)	375
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	202
Hin6I	GCGC	1 cut(s)	373
HinP1I	GCGC	1 cut(s)	373
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	3 cut(s)	128, 139, 189
Hpy166II	GTNNAC	2 cut(s)	196, 298
Hpy188I	TCNGA	3 cut(s)	111, 173, 237
Hpy188III	TCNNGA	2 cut(s)	94, 421
Hpy8I	GTNNAC	2 cut(s)	196, 298
Hpy99I	CGWCG	2 cut(s)	197, 362
HpyAV	CCTTC	2 cut(s)	173, 307
HpyCH4III	ACNGT	2 cut(s)	182, 434
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 124, 275, 379
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	230
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	202
HspAI	GCGC	1 cut(s)	373
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	9 cut(s)	90, 96, 111, 132, 159, 204, 237, 318, 364
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	1 cut(s)	362
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	1 cut(s)	414
MaeII	ACGT	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	9 cut(s)	92, 98, 113, 134, 161, 206, 239, 320, 366
MboI	GATC	9 cut(s)	90, 96, 111, 132, 159, 204, 237, 318, 364
MboII	GAAGA	1 cut(s)	58
MflI	RGATCY	3 cut(s)	132, 204, 237
MhlI	GDGCHC	1 cut(s)	384
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	4 cut(s)	146, 195, 215, 365
MreI	CGCCGGCG	1 cut(s)	188
MroNI	GCCGGC	1 cut(s)	188
MspI	CCGG	3 cut(s)	128, 139, 189
MspR9I	CCNGG	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	370
MvnI	CGCG	2 cut(s)	84, 402
MwoI	GCNNNNNNNGC	4 cut(s)	11, 124, 275, 379
NaeI	GCCGGC	1 cut(s)	190
NdeII	GATC	9 cut(s)	90, 96, 111, 132, 159, 204, 237, 318, 364
NgoMIV	GCCGGC	1 cut(s)	188
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	4 cut(s)	126, 206, 406, 419
NmuCI	GTSAC	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PdiI	GCCGGC	1 cut(s)	190
PkrI	GCNGC	2 cut(s)	86, 377
Ple19I	CGATCG	1 cut(s)	114
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	368
PspFI	CCCAGC	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	368
PspN4I	GGNNCC	4 cut(s)	126, 206, 406, 419
PspPI	GGNCC	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	375
PsuI	RGATCY	3 cut(s)	132, 204, 237
PvuI	CGATCG	1 cut(s)	114
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SalI	GTCGAC	1 cut(s)	194
SatI	GCNGC	2 cut(s)	85, 376
Sau3AI	GATC	9 cut(s)	90, 96, 111, 132, 159, 204, 237, 318, 364
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	370
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	8 cut(s)	16, 68, 120, 220, 233, 341, 415, 419
SfaNI	GCATC	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	15
SgrAI	CRCCGGYG	1 cut(s)	188
SseBI	AGGCCT	1 cut(s)	149
SsiI	CCGC	5 cut(s)	53, 76, 84, 250, 402
SspMI	CTAG	1 cut(s)	414
StuI	AGGCCT	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	368
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	182, 434
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	2 cut(s)	114, 195
TauI	GCSGC	1 cut(s)	87
TscAI	CASTG	2 cut(s)	35, 66
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	375
Tsp45I	GTSAC	1 cut(s)	61
TspGWI	ACGGA	2 cut(s)	13, 197
TspRI	CASTG	2 cut(s)	35, 66
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.