RchiOBHm_Chr3g0469551

Belongs to the universal ribosomal protein uS9 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001512
Physical Location & Seq
Forward (+)
15336704 .. 15337159
456 bp
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UTR
Exon/CDS
Intron
PRQ43538

Sequence Viewer

Length: 456 bp
ATGGCGGCTCCCCCGATCAAATCGATCCAGTGCTTTGGCAGCAAGAAGACGGCGATGGCCGTCACCTACTGCAAGGAAGGTCGCGGCTTGATCAAGATCAACGGCTACCCAATCAAGCTAGTGGAGCCAGAGATCCTCCGCTTCAAGGCCTACGAGACCATCCTTCTGCTCGGACGACACTGTTTCGCCAGCGTCGACATGAGGATCCGCGTCAAGGAAGGAAGTCACACTTCTCAGATCTACTCCATCTGTCAGTGCATAGCCAAGGCCTTGGTCGCTTATTACCATAAGTTCGTGGATGAGCAGAGCAAGAAGGAAATCAAGGACATTCTCGTCATGTATGACTGTACTCTCCTCGTCGCTAATCCAAGGCGCTGCGAGCCAGAGCTAGGTTTCGAGTGGCTGGTGTTGTCAGTTTCGAATCGCGCCTTTCGGAGACGGACCGATTCGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S9

Protein Analysis

151

Amino Acids

17.28

Weight (kDa)

9.2

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S9 PF00380 13 - 128 1.7e-20 Ribosomal protein S9/S16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 332
AccI GTMKAC 1 cut(s) 195
AccII CGCG 3 cut(s) 84, 210, 426
AciI CCGC 4 cut(s) 5, 84, 139, 208
AclWI GGATC 4 cut(s) 19, 127, 199, 212
AcoI YGGCCR 1 cut(s) 57
AfaI GTAC 1 cut(s) 349
AfiI CCNNNNNNNGG 3 cut(s) 145, 214, 389
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 2 cut(s) 118, 388
AluI AGCT 2 cut(s) 118, 388
Alw26I GTCTC 2 cut(s) 149, 430
AlwI GGATC 4 cut(s) 19, 127, 199, 212
AoxI GGCC 3 cut(s) 57, 147, 267
ApeKI GCWGC 2 cut(s) 39, 375
AspLEI GCGC 2 cut(s) 375, 428
AspS9I GGNCC 1 cut(s) 441
AsuHPI GGTGA 1 cut(s) 55
AsuII TTCGAA 1 cut(s) 419
AvaII GGWCC 1 cut(s) 441
BamHI GGATCC 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 51, 362
BccI CCATC 3 cut(s) 49, 167, 254
BceAI ACGGC 3 cut(s) 44, 66, 118
BclI TGATCA 1 cut(s) 90
BcoDI GTCTC 2 cut(s) 149, 430
BfaI CTAG 3 cut(s) 119, 389, 454
BfoI RGCGCY 1 cut(s) 376
BglII AGATCT 1 cut(s) 237
BisI GCNGC 4 cut(s) 6, 40, 85, 376
BlsI GCNGC 4 cut(s) 7, 41, 86, 377
Bme18I GGWCC 1 cut(s) 441
BmgT120I GGNCC 1 cut(s) 441
BmiI GGNNCC 3 cut(s) 9, 126, 206
BpiI GAAGAC 1 cut(s) 53
Bpu14I TTCGAA 1 cut(s) 419
Bsa29I ATCGAT 1 cut(s) 23
BsaBI GATNNNNATC 1 cut(s) 95
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 3 cut(s) 264, 270, 368
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 214, 389
Bse1I ACTGG 1 cut(s) 28
Bse8I GATNNNNATC 1 cut(s) 95
BseCI ATCGAT 1 cut(s) 23
BseDI CCNNGG 3 cut(s) 264, 270, 368
BseGI GGATG 2 cut(s) 159, 304
BseJI GATNNNNATC 1 cut(s) 95
BseLI CCNNNNNNNGG 3 cut(s) 145, 214, 389
BseMII CTCAG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 28
BseRI GAGGAG 1 cut(s) 344
BseXI GCAGC 2 cut(s) 51, 362
Bsh1236I CGCG 3 cut(s) 84, 210, 426
BshFI GGCC 3 cut(s) 59, 149, 269
BshVI ATCGAT 1 cut(s) 23
BslI CCNNNNNNNGG 3 cut(s) 145, 214, 389
BsmAI GTCTC 2 cut(s) 149, 430
BsmBI CGTCTC 1 cut(s) 430
BsnI GGCC 3 cut(s) 59, 149, 269
Bso31I GGTCTC 1 cut(s) 149
Bsp119I TTCGAA 1 cut(s) 419
Bsp143I GATC 7 cut(s) 15, 24, 90, 96, 132, 204, 237
BspACI CCGC 4 cut(s) 5, 84, 139, 208
BspANI GGCC 3 cut(s) 59, 149, 269
BspCNI CTCAG 1 cut(s) 247
BspDI ATCGAT 1 cut(s) 23
BspFNI CGCG 3 cut(s) 84, 210, 426
BspLI GGNNCC 3 cut(s) 9, 126, 206
BspPI GGATC 4 cut(s) 19, 127, 199, 212
BspT104I TTCGAA 1 cut(s) 419
BspTNI GGTCTC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 3 cut(s) 264, 270, 368
BssMI GATC 7 cut(s) 15, 24, 90, 96, 132, 204, 237
BssT1I CCWWGG 3 cut(s) 264, 270, 368
Bst4CI ACNGT 2 cut(s) 182, 347
BstBI TTCGAA 1 cut(s) 419
BstC8I GCNNGC 2 cut(s) 190, 380
BstDEI CTNAG 1 cut(s) 234
BstF5I GGATG 2 cut(s) 159, 304
BstFNI CGCG 3 cut(s) 84, 210, 426
BstH2I RGCGCY 1 cut(s) 376
BstHHI GCGC 2 cut(s) 375, 428
BstKTI GATC 7 cut(s) 18, 27, 93, 99, 135, 207, 240
BstMAI GTCTC 2 cut(s) 149, 430
BstMBI GATC 7 cut(s) 15, 24, 90, 96, 132, 204, 237
BstMWI GCNNNNNNNGC 4 cut(s) 39, 124, 275, 379
BstUI CGCG 3 cut(s) 84, 210, 426
BstV1I GCAGC 2 cut(s) 51, 362
BstV2I GAAGAC 1 cut(s) 53
BstX2I RGATCY 3 cut(s) 132, 204, 237
BstXI CCANNNNNNTGG 2 cut(s) 35, 271
BstYI RGATCY 3 cut(s) 132, 204, 237
Bsu15I ATCGAT 1 cut(s) 23
BsuRI GGCC 3 cut(s) 59, 149, 269
BsuTUI ATCGAT 1 cut(s) 23
BtgZI GCGATG 1 cut(s) 68
BtsCI GGATG 2 cut(s) 159, 304
BtsIMutI CAGTG 3 cut(s) 35, 178, 260
Cac8I GCNNGC 2 cut(s) 190, 380
CfoI GCGC 2 cut(s) 375, 428
Cfr13I GGNCC 1 cut(s) 441
ClaI ATCGAT 1 cut(s) 23
CpoI CGGWCCG 1 cut(s) 441
CseI GACGC 2 cut(s) 181, 199
Csp6I GTAC 1 cut(s) 348
CspI CGGWCCG 1 cut(s) 441
CviAII CATG 2 cut(s) 199, 337
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 1 cut(s) 234
DpnI GATC 7 cut(s) 17, 26, 92, 98, 134, 206, 239
DpnII GATC 7 cut(s) 15, 24, 90, 96, 132, 204, 237
DrdI GACNNNNNNGTC 1 cut(s) 332
DseDI GACNNNNNNGTC 1 cut(s) 332
EaeI YGGCCR 1 cut(s) 57
Eco130I CCWWGG 3 cut(s) 264, 270, 368
Eco147I AGGCCT 2 cut(s) 149, 269
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 441
EcoT14I CCWWGG 3 cut(s) 264, 270, 368
ErhI CCWWGG 3 cut(s) 264, 270, 368
Esp3I CGTCTC 1 cut(s) 430
FaeI CATG 2 cut(s) 202, 340
FaiI YATR 5 cut(s) 200, 260, 288, 338, 342
FalI AAGNNNNNCTT 2 cut(s) 214, 246
FatI CATG 2 cut(s) 198, 336
FbaI TGATCA 1 cut(s) 90
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 4 cut(s) 6, 40, 85, 376
FokI GGATG 2 cut(s) 146, 311
Fsp4HI GCNGC 4 cut(s) 6, 40, 85, 376
FspBI CTAG 3 cut(s) 119, 389, 454
GlaI GCGC 2 cut(s) 374, 427
GluI GCNGC 4 cut(s) 6, 40, 85, 376
HaeII RGCGCY 1 cut(s) 376
HaeIII GGCC 3 cut(s) 59, 149, 269
HgaI GACGC 2 cut(s) 181, 199
HhaI GCGC 2 cut(s) 375, 428
Hin1II CATG 2 cut(s) 202, 340
Hin6I GCGC 2 cut(s) 373, 426
HinP1I GCGC 2 cut(s) 373, 426
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 2 cut(s) 421, 446
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 4 cut(s) 173, 237, 435, 451
Hpy188III TCNNGA 1 cut(s) 94
Hpy8I GTNNAC 1 cut(s) 196
Hpy99I CGWCG 2 cut(s) 197, 362
HpyAV CCTTC 4 cut(s) 71, 173, 212, 307
HpyCH4III ACNGT 2 cut(s) 182, 347
HpyCH4V TGCA 2 cut(s) 72, 258
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 124, 275, 379
HpyF3I CTNAG 1 cut(s) 234
Hsp92II CATG 2 cut(s) 202, 340
HspAI GCGC 2 cut(s) 373, 426
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 7 cut(s) 15, 24, 90, 96, 132, 204, 237
LmnI GCTCC 2 cut(s) 13, 124
LpnPI CCDG 5 cut(s) 41, 141, 202, 389, 396
Lsp1109I GCAGC 2 cut(s) 51, 362
MaeI CTAG 3 cut(s) 119, 389, 454
MaeIII GTNAC 2 cut(s) 61, 224
MalI GATC 7 cut(s) 17, 26, 92, 98, 134, 206, 239
MboI GATC 7 cut(s) 15, 24, 90, 96, 132, 204, 237
MboII GAAGA 1 cut(s) 58
MflI RGATCY 3 cut(s) 132, 204, 237
MnlI CCTC 3 cut(s) 146, 195, 365
MvnI CGCG 3 cut(s) 84, 210, 426
MwoI GCNNNNNNNGC 4 cut(s) 39, 124, 275, 379
NdeII GATC 7 cut(s) 15, 24, 90, 96, 132, 204, 237
NlaIII CATG 2 cut(s) 202, 340
NlaIV GGNNCC 3 cut(s) 9, 126, 206
NmuCI GTSAC 2 cut(s) 61, 224
NspV TTCGAA 1 cut(s) 419
PceI AGGCCT 2 cut(s) 149, 269
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PfeI GAWTC 2 cut(s) 421, 446
PkrI GCNGC 4 cut(s) 7, 41, 86, 377
PspN4I GGNNCC 3 cut(s) 9, 126, 206
PspPI GGNCC 1 cut(s) 441
PsuI RGATCY 3 cut(s) 132, 204, 237
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
Rsr2I CGGWCCG 1 cut(s) 441
RsrII CGGWCCG 1 cut(s) 441
SalI GTCGAC 1 cut(s) 194
SatI GCNGC 4 cut(s) 6, 40, 85, 376
Sau3AI GATC 7 cut(s) 15, 24, 90, 96, 132, 204, 237
Sau96I GGNCC 1 cut(s) 441
SetI ASST 5 cut(s) 68, 82, 120, 390, 394
SfuI TTCGAA 1 cut(s) 419
SinI GGWCC 1 cut(s) 441
SseBI AGGCCT 2 cut(s) 149, 269
SsiI CCGC 4 cut(s) 5, 84, 139, 208
SspMI CTAG 3 cut(s) 119, 389, 454
StuI AGGCCT 2 cut(s) 149, 269
StyI CCWWGG 3 cut(s) 264, 270, 368
TaaI ACNGT 2 cut(s) 182, 347
TaqI TCGA 4 cut(s) 23, 195, 396, 419
TatI WGTACW 1 cut(s) 347
TauI GCSGC 2 cut(s) 8, 87
TfiI GAWTC 2 cut(s) 421, 446
TscAI CASTG 3 cut(s) 35, 185, 260
TseFI GTSAC 2 cut(s) 61, 224
TseI GCWGC 2 cut(s) 39, 375
Tsp45I GTSAC 2 cut(s) 61, 224
TspGWI ACGGA 1 cut(s) 454
TspRI CASTG 3 cut(s) 35, 185, 260
VpaK11BI GGWCC 1 cut(s) 441
XmiI GTMKAC 1 cut(s) 195
XspI CTAG 3 cut(s) 119, 389, 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.