Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001512

Physical Location & Seq

Genomic Coordinates Forward (+)

4712535 .. 4714124

Gene Structure 1590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCGGCGGCAGTGGTTCCATCTAAGGAGTCCGTCCAATGCTTCGGTCGCAAGAAGACCGCGGTGGCCGTGACCTACTGCAAGCGCGGCCGTGGCCTCATCAAGATCAACGGCTGCCCAATCGAGCTCGTCGAGCCAGAGATCCTCCGATTCAAGGCCTACGAGCCGATCCTCCTCCTCGGACGACACCGTTTCGCTGACGTGGACATGCGCATCCGCGTCAAGGGCGGAGGTCACACGTCTCAGATCTACGCCATCCGTCAGAGCATCGCTAAGGCGTTGGTTGCTTTCTACCAGAAGTATGTGGATGAGCAGAGCAAGAAGGAGATTAAGGACATTTTGGTCAGGTACGACAGGACTCTCCTCGTCGCTGATCCAAGGCGCTGCGAGCCCAAGAAGTTCGGTGGGCGTGGTGCTCGTGCTAGGTTCCAGAAGTCTTACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

149

Amino Acids

16.87

Weight (kDa)

10.16

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S9	PF00380	16 - 148	5.3e-38	Ribosomal protein S9/S16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G09990 AT3G04230 AT5G18380 AT5G18380
fragaria_vesca	FvH4_2g05750
malus_domestica	MD05G1084000.v1.1 MD13G1187300.v1.1 MD16G1188000.v1.1
prunus_persica	Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.8G128300_v2.0.a1
pyrus_communis	pycom16g15800
rosa_chinensis	RchiOBHm_Chr2g0126911 RchiOBHm_Chr3g0469551 RchiOBHm_Chr4g0416971 RchiOBHm_Chr7g0205351
rosa_laevigata	RLG00000003385 RLG00000018927
rosa_multiflora	Rmu_co8452851.1_g000001 Rmu_sc0000007.1_g000029 Rmu_sc0007239.1_g000007 Rmu_sc0009725.1_g000007 Rmu_sc0022422.1_g000001 Rmu_ssc0000004.1_g000020 Rmu_ssc0000010.1_g000016
rosa_roxburghii	Rroxscaffold_2G00116930 Rroxscaffold_3G00252430 Rroxscaffold_5G00360850
rosa_rugosa	Rorug02G0270100 Rorug04G0145800 Rorug07G0090300 Rorug07G0289500 Rorug07G0320600
rosa_samantha	Rh1BG296000 Rh1DG328300 Rh2AG322400 Rh2BG330600 Rh2CG310500 Rh2DG349900 Rh4BG205400 Rh4CG219100 Rh4DG205800 Rh7AG220700 Rh7BG217000 Rh7BG274700 Rh7CG233700 Rh7DG227600
rosa_wichuraiana	Rw2G026150 Rw4G017650 Rw7G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
Acc16I	TGCGCA	1 cut(s)	212
AccII	CGCG	3 cut(s)	62, 87, 219
AciI	CCGC	7 cut(s)	5, 8, 60, 62, 87, 217, 228
AclWI	GGATC	3 cut(s)	136, 163, 368
AcoI	YGGCCR	2 cut(s)	66, 88
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	2 cut(s)	154, 223
AflIII	ACRYGT	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	154
AjiI	CACGTC	2 cut(s)	202, 240
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Alw21I	GWGCWC	2 cut(s)	129, 418
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	3 cut(s)	136, 163, 368
AoxI	GGCC	4 cut(s)	66, 88, 94, 156
ApeKI	GCWGC	2 cut(s)	114, 384
AspLEI	GCGC	3 cut(s)	87, 213, 384
BanII	GRGCYC	2 cut(s)	129, 393
BauI	CACGAG	1 cut(s)	417
BbsI	GAAGAC	1 cut(s)	62
Bbv12I	GWGCWC	2 cut(s)	129, 418
BbvI	GCAGC	2 cut(s)	101, 371
BccI	CCATC	2 cut(s)	28, 263
BceAI	ACGGC	3 cut(s)	53, 75, 127
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	1 cut(s)	423
BfoI	RGCGCY	1 cut(s)	385
BglII	AGATCT	1 cut(s)	246
BisI	GCNGC	5 cut(s)	6, 9, 88, 115, 385
BlsI	GCNGC	5 cut(s)	7, 10, 89, 116, 386
BmgBI	CACGTC	2 cut(s)	202, 240
BmiI	GGNNCC	2 cut(s)	18, 428
BmsI	GCATC	2 cut(s)	222, 276
BpiI	GAAGAC	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	273
BsaJI	CCNNGG	4 cut(s)	60, 91, 178, 377
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 223
BseDI	CCNNGG	4 cut(s)	60, 91, 178, 377
BseGI	GGATG	3 cut(s)	213, 255, 313
BseLI	CCNNNNNNNGG	2 cut(s)	154, 223
BseMII	CTCAG	1 cut(s)	257
BseRI	GAGGAG	3 cut(s)	164, 167, 353
BseX3I	CGGCCG	1 cut(s)	88
BseXI	GCAGC	2 cut(s)	101, 371
Bsh1236I	CGCG	3 cut(s)	62, 87, 219
Bsh1285I	CGRYCG	2 cut(s)	49, 91
BshFI	GGCC	4 cut(s)	68, 90, 96, 158
BsiEI	CGRYCG	2 cut(s)	49, 91
BsiHKAI	GWGCWC	2 cut(s)	129, 418
BslI	CCNNNNNNNGG	2 cut(s)	154, 223
BsmAI	GTCTC	1 cut(s)	246
BsmBI	CGTCTC	1 cut(s)	246
BsnI	GGCC	4 cut(s)	68, 90, 96, 158
Bsp1286I	GDGCHC	3 cut(s)	129, 393, 418
Bsp143I	GATC	5 cut(s)	105, 141, 168, 246, 373
BspACI	CCGC	7 cut(s)	5, 8, 60, 62, 87, 217, 228
BspANI	GGCC	4 cut(s)	68, 90, 96, 158
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	3 cut(s)	62, 87, 219
BspLI	GGNNCC	2 cut(s)	18, 428
BspPI	GGATC	3 cut(s)	136, 163, 368
BssECI	CCNNGG	4 cut(s)	60, 91, 178, 377
BssMI	GATC	5 cut(s)	105, 141, 168, 246, 373
BssSI	CACGAG	1 cut(s)	417
BssT1I	CCWWGG	1 cut(s)	377
Bst2BI	CACGAG	1 cut(s)	417
Bst4CI	ACNGT	2 cut(s)	191, 443
BstC8I	GCNNGC	2 cut(s)	83, 389
BstDEI	CTNAG	3 cut(s)	24, 243, 273
BstDSI	CCRYGG	2 cut(s)	60, 91
BstF5I	GGATG	3 cut(s)	213, 255, 313
BstFNI	CGCG	3 cut(s)	62, 87, 219
BstH2I	RGCGCY	1 cut(s)	385
BstHHI	GCGC	3 cut(s)	87, 213, 384
BstKTI	GATC	5 cut(s)	108, 144, 171, 249, 376
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	5 cut(s)	105, 141, 168, 246, 373
BstMCI	CGRYCG	2 cut(s)	49, 91
BstMWI	GCNNNNNNNGC	7 cut(s)	48, 87, 93, 133, 225, 284, 388
BstNSI	RCATGY	1 cut(s)	211
BstUI	CGCG	3 cut(s)	62, 87, 219
BstV1I	GCAGC	2 cut(s)	101, 371
BstV2I	GAAGAC	1 cut(s)	62
BstX2I	RGATCY	2 cut(s)	141, 246
BstYI	RGATCY	2 cut(s)	141, 246
BstZI	CGGCCG	1 cut(s)	88
BsuRI	GGCC	4 cut(s)	68, 90, 96, 158
BtgI	CCRYGG	2 cut(s)	60, 91
BtgZI	GCGATG	1 cut(s)	253
BtrI	CACGTC	2 cut(s)	202, 240
BtsCI	GGATG	3 cut(s)	213, 255, 313
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	83, 389
CfoI	GCGC	3 cut(s)	87, 213, 384
Cfr42I	CCGCGG	1 cut(s)	63
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	9 cut(s)	68, 90, 96, 114, 127, 136, 158, 166, 391
CviKI_1	RGCY	9 cut(s)	68, 90, 96, 114, 127, 136, 158, 166, 391
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	3 cut(s)	24, 243, 273
DpnI	GATC	5 cut(s)	107, 143, 170, 248, 375
DpnII	GATC	5 cut(s)	105, 141, 168, 246, 373
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
EaeI	YGGCCR	2 cut(s)	66, 88
EagI	CGGCCG	1 cut(s)	88
EciI	GGCGGA	1 cut(s)	243
Ecl136II	GAGCTC	1 cut(s)	127
EclXI	CGGCCG	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	377
Eco147I	AGGCCT	1 cut(s)	158
Eco24I	GRGCYC	2 cut(s)	129, 393
Eco52I	CGGCCG	1 cut(s)	88
Eco53kI	GAGCTC	1 cut(s)	127
EcoICRI	GAGCTC	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	377
EcoT38I	GRGCYC	2 cut(s)	129, 393
ErhI	CCWWGG	1 cut(s)	377
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	1 cut(s)	211
FaiI	YATR	2 cut(s)	209, 303
FatI	CATG	1 cut(s)	207
Fnu4HI	GCNGC	5 cut(s)	6, 9, 88, 115, 385
FokI	GGATG	3 cut(s)	200, 242, 320
FriOI	GRGCYC	2 cut(s)	129, 393
Fsp4HI	GCNGC	5 cut(s)	6, 9, 88, 115, 385
FspAI	RTGCGCAY	1 cut(s)	212
FspBI	CTAG	1 cut(s)	423
FspI	TGCGCA	1 cut(s)	212
GlaI	GCGC	3 cut(s)	86, 212, 383
GluI	GCNGC	5 cut(s)	6, 9, 88, 115, 385
HaeII	RGCGCY	1 cut(s)	385
HaeIII	GGCC	4 cut(s)	68, 90, 96, 158
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	3 cut(s)	87, 213, 384
Hin1II	CATG	1 cut(s)	211
Hin6I	GCGC	3 cut(s)	85, 211, 382
HinP1I	GCGC	3 cut(s)	85, 211, 382
HinfI	GANTC	3 cut(s)	29, 150, 358
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	4 cut(s)	149, 182, 246, 264
Hpy188III	TCNNGA	2 cut(s)	103, 430
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	2 cut(s)	134, 371
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	2 cut(s)	191, 443
HpyCH4IV	ACGT	2 cut(s)	201, 239
HpyCH4V	TGCA	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	7 cut(s)	48, 87, 93, 133, 225, 284, 388
HpyF3I	CTNAG	3 cut(s)	24, 243, 273
HpySE526I	ACGT	2 cut(s)	201, 239
Hsp92II	CATG	1 cut(s)	211
HspAI	GCGC	3 cut(s)	85, 211, 382
KspI	CCGCGG	1 cut(s)	63
Kzo9I	GATC	5 cut(s)	105, 141, 168, 246, 373
LpnPI	CCDG	5 cut(s)	150, 308, 331, 340, 443
Lsp1109I	GCAGC	2 cut(s)	101, 371
LweI	GCATC	2 cut(s)	222, 276
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	2 cut(s)	201, 239
MaeIII	GTNAC	2 cut(s)	70, 233
MalI	GATC	5 cut(s)	107, 143, 170, 248, 375
MboI	GATC	5 cut(s)	105, 141, 168, 246, 373
MboII	GAAGA	1 cut(s)	67
MflI	RGATCY	2 cut(s)	141, 246
MhlI	GDGCHC	3 cut(s)	129, 393, 418
MlyI	GAGTC	2 cut(s)	38, 352
MnlI	CCTC	7 cut(s)	107, 155, 182, 185, 188, 224, 374
MseI	TTAA	2 cut(s)	330, 445
MspA1I	CMGCKG	1 cut(s)	62
MvnI	CGCG	3 cut(s)	62, 87, 219
MwoI	GCNNNNNNNGC	7 cut(s)	48, 87, 93, 133, 225, 284, 388
NdeII	GATC	5 cut(s)	105, 141, 168, 246, 373
NlaIII	CATG	1 cut(s)	211
NlaIV	GGNNCC	2 cut(s)	18, 428
NmuCI	GTSAC	2 cut(s)	70, 233
NsbI	TGCGCA	1 cut(s)	212
NspI	RCATGY	1 cut(s)	211
PceI	AGGCCT	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	150
PkrI	GCNGC	5 cut(s)	7, 10, 89, 116, 386
PleI	GAGTC	2 cut(s)	37, 352
PpsI	GAGTC	2 cut(s)	37, 352
Psp124BI	GAGCTC	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	18, 428
PsuI	RGATCY	2 cut(s)	141, 246
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SacI	GAGCTC	1 cut(s)	129
SacII	CCGCGG	1 cut(s)	63
SaqAI	TTAA	2 cut(s)	330, 445
SatI	GCNGC	5 cut(s)	6, 9, 88, 115, 385
Sau3AI	GATC	5 cut(s)	105, 141, 168, 246, 373
SchI	GAGTC	2 cut(s)	38, 352
SduI	GDGCHC	3 cut(s)	129, 393, 418
SetI	ASST	7 cut(s)	77, 129, 204, 235, 242, 350, 428
SfaNI	GCATC	2 cut(s)	222, 276
Sfr303I	CCGCGG	1 cut(s)	63
SgrBI	CCGCGG	1 cut(s)	63
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	7 cut(s)	5, 8, 60, 62, 87, 217, 228
SspMI	CTAG	1 cut(s)	423
SstI	GAGCTC	1 cut(s)	129
StuI	AGGCCT	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	377
TaaI	ACNGT	2 cut(s)	191, 443
TaiI	ACGT	2 cut(s)	204, 242
TaqI	TCGA	2 cut(s)	123, 132
TaqII	GACCGA	1 cut(s)	35
TauI	GCSGC	3 cut(s)	8, 11, 90
TfiI	GAWTC	1 cut(s)	150
Tru1I	TTAA	2 cut(s)	330, 445
Tru9I	TTAA	2 cut(s)	330, 445
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	2 cut(s)	70, 233
TseI	GCWGC	2 cut(s)	114, 384
Tsp45I	GTSAC	2 cut(s)	70, 233
TspGWI	ACGGA	2 cut(s)	22, 248
TspRI	CASTG	1 cut(s)	18
XceI	RCATGY	1 cut(s)	211
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.