Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001512

Physical Location & Seq

Genomic Coordinates Reverse (-)

6089712 .. 6090804

Gene Structure 1093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G18380.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCGACTCAACCAGCTACTGAATCTGTGCAATGCTTCGGAAGGAAGAAGACCGCAGTGGCCGTCACTCACTGCAAGCGTGGATCTGGTTTGATCAAGCTCAACGGTTGCCCAATCGAGCTTTTCCAGCCTGAGATCCTCCGATTCAAGATCTTCGAGCCGGTTCTTCTCCTCGGAAAGCACCGTTTCGCTGGTGTGAACATGAGGATCCGTGTCAACGGTGGTGGTCACACATCCCAGGTTTACGCCATCCGTCAGAGTATCGCGAAGGCTCTTGTTGCGTACTACCAGAAGTATGTGGATGAGCAGTCGAAGAAGGAGATTAAGGATATCTTGGTGAGGTATGATAGGACTCTGCTTGTGGCGGATCCGAGGAGGTGTGAGCCGAAGAAGTTTGGTGGTCGTGGTGCTCGTTCTCGTTACCAGAAGAGTTACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0030490 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

146

Amino Acids

16.62

Weight (kDa)

10.21

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S9	PF00380	14 - 110	7.6e-23	Ribosomal protein S9/S16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G09990 AT3G04230 AT5G18380 AT5G18380
fragaria_vesca	FvH4_2g05750
malus_domestica	MD05G1084000.v1.1 MD13G1187300.v1.1 MD16G1188000.v1.1
prunus_persica	Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.8G128300_v2.0.a1
pyrus_communis	pycom16g15800
rosa_chinensis	RchiOBHm_Chr2g0126911 RchiOBHm_Chr3g0469551 RchiOBHm_Chr4g0416971 RchiOBHm_Chr7g0205351
rosa_laevigata	RLG00000003385 RLG00000018927
rosa_multiflora	Rmu_co8452851.1_g000001 Rmu_sc0000007.1_g000029 Rmu_sc0007239.1_g000007 Rmu_sc0009725.1_g000007 Rmu_sc0022422.1_g000001 Rmu_ssc0000004.1_g000020 Rmu_ssc0000010.1_g000016
rosa_roxburghii	Rroxscaffold_2G00116930 Rroxscaffold_3G00252430 Rroxscaffold_5G00360850
rosa_rugosa	Rorug02G0270100 Rorug04G0145800 Rorug07G0090300 Rorug07G0289500 Rorug07G0320600
rosa_samantha	Rh1BG296000 Rh1DG328300 Rh2AG322400 Rh2BG330600 Rh2CG310500 Rh2DG349900 Rh4BG205400 Rh4CG219100 Rh4DG205800 Rh7AG220700 Rh7BG217000 Rh7BG274700 Rh7CG233700 Rh7DG227600
rosa_wichuraiana	Rw2G026150 Rw4G017650 Rw7G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	266
AciI	CCGC	2 cut(s)	54, 365
AclWI	GGATC	6 cut(s)	91, 130, 202, 215, 362, 375
AcoI	YGGCCR	1 cut(s)	60
AfaI	GTAC	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	3 cut(s)	17, 100, 121
AluI	AGCT	3 cut(s)	17, 100, 121
Alw21I	GWGCWC	1 cut(s)	412
AlwI	GGATC	6 cut(s)	91, 130, 202, 215, 362, 375
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	349
BamHI	GGATCC	2 cut(s)	207, 367
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	412
BccI	CCATC	1 cut(s)	257
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	239
BclI	TGATCA	1 cut(s)	93
BglII	AGATCT	1 cut(s)	150
Bme1390I	CCNGG	1 cut(s)	239
BmiI	GGNNCC	2 cut(s)	209, 369
BmrFI	CCNGG	1 cut(s)	239
BpiI	GAAGAC	1 cut(s)	56
BsaJI	CCNNGG	3 cut(s)	172, 237, 371
Bse118I	RCCGGY	1 cut(s)	160
Bse3DI	GCAATG	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	3 cut(s)	172, 237, 371
BseGI	GGATG	3 cut(s)	233, 249, 307
BseMI	GCAATG	1 cut(s)	38
BseMII	CTCAG	1 cut(s)	123
BseRI	GAGGAG	2 cut(s)	161, 388
Bsh1236I	CGCG	1 cut(s)	266
BshFI	GGCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	412
BsiSI	CCGG	1 cut(s)	161
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp143I	GATC	6 cut(s)	83, 93, 135, 150, 207, 367
Bsp68I	TCGCGA	1 cut(s)	266
BspACI	CCGC	2 cut(s)	54, 365
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	124
BspFNI	CGCG	1 cut(s)	266
BspLI	GGNNCC	2 cut(s)	209, 369
BspPI	GGATC	6 cut(s)	91, 130, 202, 215, 362, 375
BsrDI	GCAATG	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	160
BssAI	RCCGGY	1 cut(s)	160
BssECI	CCNNGG	3 cut(s)	172, 237, 371
BssMI	GATC	6 cut(s)	83, 93, 135, 150, 207, 367
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	4 cut(s)	107, 185, 221, 437
Bst6I	CTCTTC	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	1 cut(s)	132
BstF5I	GGATG	3 cut(s)	233, 249, 307
BstFNI	CGCG	1 cut(s)	266
BstKTI	GATC	6 cut(s)	86, 96, 138, 153, 210, 370
BstMBI	GATC	6 cut(s)	83, 93, 135, 150, 207, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 278
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	237
BstUI	CGCG	1 cut(s)	266
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	5 cut(s)	83, 135, 150, 207, 367
BstYI	RGATCY	5 cut(s)	83, 135, 150, 207, 367
BsuRI	GGCC	1 cut(s)	62
BtsCI	GGATG	3 cut(s)	233, 249, 307
BtsI	GCAGTG	2 cut(s)	63, 70
BtsIMutI	CAGTG	2 cut(s)	63, 70
BtuMI	TCGCGA	1 cut(s)	266
Cac8I	GCNNGC	1 cut(s)	77
CaiI	CAGNNNCTG	1 cut(s)	20
Cfr10I	RCCGGY	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	283
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	8 cut(s)	17, 62, 100, 121, 130, 160, 272, 385
CviKI_1	RGCY	8 cut(s)	17, 62, 100, 121, 130, 160, 272, 385
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	6 cut(s)	85, 95, 137, 152, 209, 369
DpnII	GATC	6 cut(s)	83, 93, 135, 150, 207, 367
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
EciI	GGCGGA	1 cut(s)	380
Eco32I	GATATC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	237
EcoRV	GATATC	1 cut(s)	331
FaeI	CATG	1 cut(s)	205
FaiI	YATR	3 cut(s)	203, 297, 345
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FatI	CATG	1 cut(s)	201
FbaI	TGATCA	1 cut(s)	93
FokI	GGATG	3 cut(s)	220, 236, 314
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	1 cut(s)	205
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	4 cut(s)	7, 23, 144, 352
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	3 cut(s)	199, 217, 244
Hpy188I	TCNGA	5 cut(s)	41, 143, 176, 258, 372
Hpy188III	TCNNGA	2 cut(s)	148, 265
Hpy8I	GTNNAC	3 cut(s)	199, 217, 244
HpyAV	CCTTC	3 cut(s)	36, 262, 310
HpyCH4III	ACNGT	4 cut(s)	107, 185, 221, 437
HpyCH4V	TGCA	2 cut(s)	31, 75
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 278
HpyF3I	CTNAG	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	205
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	6 cut(s)	83, 93, 135, 150, 207, 367
MaeIII	GTNAC	4 cut(s)	64, 227, 419, 431
MalI	GATC	6 cut(s)	85, 95, 137, 152, 209, 369
MboI	GATC	6 cut(s)	83, 93, 135, 150, 207, 367
MboII	GAAGA	7 cut(s)	58, 61, 145, 158, 325, 400, 439
MflI	RGATCY	5 cut(s)	83, 135, 150, 207, 367
MhlI	GDGCHC	1 cut(s)	412
MlyI	GAGTC	1 cut(s)	346
MnlI	CCTC	6 cut(s)	149, 182, 198, 333, 366, 369
MseI	TTAA	2 cut(s)	324, 439
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	2 cut(s)	127, 278
NdeII	GATC	6 cut(s)	83, 93, 135, 150, 207, 367
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	2 cut(s)	209, 369
NmuCI	GTSAC	2 cut(s)	64, 227
NruI	TCGCGA	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	1 cut(s)	409
PfeI	GAWTC	2 cut(s)	23, 144
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	2 cut(s)	209, 369
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	5 cut(s)	83, 135, 150, 207, 367
RruI	TCGCGA	1 cut(s)	266
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SaqAI	TTAA	2 cut(s)	324, 439
Sau3AI	GATC	6 cut(s)	83, 93, 135, 150, 207, 367
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	412
SetI	ASST	6 cut(s)	19, 102, 123, 243, 344, 380
SsiI	CCGC	2 cut(s)	54, 365
StyD4I	CCNGG	1 cut(s)	237
TaaI	ACNGT	4 cut(s)	107, 185, 221, 437
TaqI	TCGA	3 cut(s)	117, 156, 311
TfiI	GAWTC	2 cut(s)	23, 144
Tru1I	TTAA	2 cut(s)	324, 439
Tru9I	TTAA	2 cut(s)	324, 439
TscAI	CASTG	2 cut(s)	63, 77
TseFI	GTSAC	2 cut(s)	64, 227
Tsp45I	GTSAC	2 cut(s)	64, 227
TspGWI	ACGGA	2 cut(s)	200, 242
TspRI	CASTG	2 cut(s)	63, 77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.