Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001512

Physical Location & Seq

Genomic Coordinates Forward (+)

20514214 .. 20514934

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG220700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCGGCGGCTGTTCCAGCAAAGGAGTCCGTTCAGTGCTTCGGTCGCAAGAAGACCGCCGTGGCCGTCACCTACTGCAAGCGCGGCCGTGGCCTCATCAAGATCAACGGTTGCCCAATCGAGCTCGTCGAGCCGGAGATCCTCCGGTTCAAGGCCTACGAGCCCATCCTCCTCCTCGGACGACACCGTTTCGCCGACGTGGACATGCGCATCCGTGTGAAGGGCGGAGGCCACACTTCTCAGATCTATGCCATCCGTCAGAGCATCGCGAAGGCCCTGGTGGCTTTCTACCAGAAGTACGTGGATGAGCAGAGCAAGAAGGAGATTAAGGACATTCTGGTCAGGTACGACAGGACTCTCCTTGTTGCTGATCCCAGGCGCTGCGAGCCCAAGAAGTTCGGTGGCCGTGGTGCTCGTGCCAGGTTCCAGAAGTCTTACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

147

Amino Acids

16.76

Weight (kDa)

10.16

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S9	PF00380	15 - 147	5.1e-38	Ribosomal protein S9/S16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G09990 AT3G04230 AT5G18380 AT5G18380
fragaria_vesca	FvH4_2g05750
malus_domestica	MD05G1084000.v1.1 MD13G1187300.v1.1 MD16G1188000.v1.1
prunus_persica	Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.8G128300_v2.0.a1
pyrus_communis	pycom16g15800
rosa_chinensis	RchiOBHm_Chr2g0126911 RchiOBHm_Chr3g0469551 RchiOBHm_Chr4g0416971 RchiOBHm_Chr7g0205351
rosa_laevigata	RLG00000003385 RLG00000018927
rosa_multiflora	Rmu_co8452851.1_g000001 Rmu_sc0000007.1_g000029 Rmu_sc0007239.1_g000007 Rmu_sc0009725.1_g000007 Rmu_sc0022422.1_g000001 Rmu_ssc0000004.1_g000020 Rmu_ssc0000010.1_g000016
rosa_roxburghii	Rroxscaffold_2G00116930 Rroxscaffold_3G00252430 Rroxscaffold_5G00360850
rosa_rugosa	Rorug02G0270100 Rorug04G0145800 Rorug07G0090300 Rorug07G0289500 Rorug07G0320600
rosa_samantha	Rh1BG296000 Rh1DG328300 Rh2AG322400 Rh2BG330600 Rh2CG310500 Rh2DG349900 Rh4BG205400 Rh4CG219100 Rh4DG205800 Rh7AG220700 Rh7BG217000 Rh7BG274700 Rh7CG233700 Rh7DG227600
rosa_wichuraiana	Rw2G026150 Rw4G017650 Rw7G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	338
Acc16I	TGCGCA	1 cut(s)	209
AccII	CGCG	2 cut(s)	84, 269
AciI	CCGC	5 cut(s)	5, 8, 57, 84, 225
AclWI	GGATC	2 cut(s)	133, 365
AcoI	YGGCCR	3 cut(s)	63, 85, 403
AfaI	GTAC	2 cut(s)	299, 347
AfiI	CCNNNNNNNGG	2 cut(s)	151, 220
AgsI	TTSAA	1 cut(s)	151
AjiI	CACGTC	1 cut(s)	199
AjnI	CCWGG	3 cut(s)	276, 374, 419
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
Alw21I	GWGCWC	2 cut(s)	126, 415
AlwI	GGATC	2 cut(s)	133, 365
AlwNI	CAGNNNCTG	1 cut(s)	381
AoxI	GGCC	7 cut(s)	63, 85, 91, 153, 229, 273, 403
ApeKI	GCWGC	1 cut(s)	381
AspLEI	GCGC	3 cut(s)	84, 210, 381
AspS9I	GGNCC	1 cut(s)	274
AsuHPI	GGTGA	1 cut(s)	61
BanII	GRGCYC	3 cut(s)	126, 165, 390
BauI	CACGAG	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	59
Bbv12I	GWGCWC	2 cut(s)	126, 415
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	2 cut(s)	173, 260
BceAI	ACGGC	4 cut(s)	44, 50, 72, 390
BciT130I	CCWGG	3 cut(s)	278, 376, 421
BfoI	RGCGCY	1 cut(s)	382
BglI	GCCNNNNNGGC	1 cut(s)	281
BglII	AGATCT	1 cut(s)	243
BisI	GCNGC	4 cut(s)	6, 9, 85, 382
BlsI	GCNGC	4 cut(s)	7, 10, 86, 383
Bme1390I	CCNGG	3 cut(s)	278, 376, 421
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	425
BmrFI	CCNGG	3 cut(s)	278, 376, 421
BmsI	GCATC	2 cut(s)	219, 273
BpiI	GAAGAC	1 cut(s)	59
BsaAI	YACGTR	1 cut(s)	301
BsaJI	CCNNGG	6 cut(s)	60, 88, 175, 276, 374, 406
BsaWI	WCCGGW	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 220
BseBI	CCWGG	3 cut(s)	278, 376, 421
BseDI	CCNNGG	6 cut(s)	60, 88, 175, 276, 374, 406
BseGI	GGATG	4 cut(s)	165, 210, 252, 310
BseLI	CCNNNNNNNGG	2 cut(s)	151, 220
BseMII	CTCAG	1 cut(s)	254
BseRI	GAGGAG	2 cut(s)	161, 164
BseX3I	CGGCCG	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	368
Bsh1236I	CGCG	2 cut(s)	84, 269
Bsh1285I	CGRYCG	2 cut(s)	46, 88
BshFI	GGCC	7 cut(s)	65, 87, 93, 155, 231, 275, 405
BsiEI	CGRYCG	2 cut(s)	46, 88
BsiHKAI	GWGCWC	2 cut(s)	126, 415
BsiSI	CCGG	2 cut(s)	134, 145
BslI	CCNNNNNNNGG	2 cut(s)	151, 220
BsnI	GGCC	7 cut(s)	65, 87, 93, 155, 231, 275, 405
Bsp1286I	GDGCHC	4 cut(s)	126, 165, 390, 415
Bsp143I	GATC	4 cut(s)	102, 138, 243, 370
Bsp68I	TCGCGA	1 cut(s)	269
BspACI	CCGC	5 cut(s)	5, 8, 57, 84, 225
BspANI	GGCC	7 cut(s)	65, 87, 93, 155, 231, 275, 405
BspCNI	CTCAG	1 cut(s)	253
BspFNI	CGCG	2 cut(s)	84, 269
BspLI	GGNNCC	1 cut(s)	425
BspPI	GGATC	2 cut(s)	133, 365
BssECI	CCNNGG	6 cut(s)	60, 88, 175, 276, 374, 406
BssMI	GATC	4 cut(s)	102, 138, 243, 370
BssSI	CACGAG	1 cut(s)	414
Bst2BI	CACGAG	1 cut(s)	414
Bst2UI	CCWGG	3 cut(s)	278, 376, 421
Bst4CI	ACNGT	3 cut(s)	110, 188, 440
BstBAI	YACGTR	1 cut(s)	301
BstC8I	GCNNGC	2 cut(s)	80, 386
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	3 cut(s)	60, 88, 406
BstF5I	GGATG	4 cut(s)	165, 210, 252, 310
BstFNI	CGCG	2 cut(s)	84, 269
BstH2I	RGCGCY	1 cut(s)	382
BstHHI	GCGC	3 cut(s)	84, 210, 381
BstKTI	GATC	4 cut(s)	105, 141, 246, 373
BstMBI	GATC	4 cut(s)	102, 138, 243, 370
BstMCI	CGRYCG	2 cut(s)	46, 88
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 45, 84, 90, 130, 281, 385
BstNI	CCWGG	3 cut(s)	278, 376, 421
BstNSI	RCATGY	1 cut(s)	208
BstSCI	CCNGG	3 cut(s)	276, 374, 419
BstUI	CGCG	2 cut(s)	84, 269
BstV1I	GCAGC	1 cut(s)	368
BstV2I	GAAGAC	1 cut(s)	59
BstX2I	RGATCY	2 cut(s)	138, 243
BstYI	RGATCY	2 cut(s)	138, 243
BstZI	CGGCCG	1 cut(s)	85
BsuRI	GGCC	7 cut(s)	65, 87, 93, 155, 231, 275, 405
BtgI	CCRYGG	3 cut(s)	60, 88, 406
BtgZI	GCGATG	1 cut(s)	250
BtrI	CACGTC	1 cut(s)	199
BtsCI	GGATG	4 cut(s)	165, 210, 252, 310
BtsIMutI	CAGTG	1 cut(s)	41
BtuMI	TCGCGA	1 cut(s)	269
Cac8I	GCNNGC	2 cut(s)	80, 386
CaiI	CAGNNNCTG	1 cut(s)	381
CfoI	GCGC	3 cut(s)	84, 210, 381
Cfr13I	GGNCC	1 cut(s)	274
Csp6I	GTAC	2 cut(s)	298, 346
CviAII	CATG	1 cut(s)	205
CviQI	GTAC	2 cut(s)	298, 346
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	4 cut(s)	104, 140, 245, 372
DpnII	GATC	4 cut(s)	102, 138, 243, 370
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
EaeI	YGGCCR	3 cut(s)	63, 85, 403
EagI	CGGCCG	1 cut(s)	85
EciI	GGCGGA	1 cut(s)	240
Ecl136II	GAGCTC	1 cut(s)	124
EclXI	CGGCCG	1 cut(s)	85
Eco147I	AGGCCT	1 cut(s)	155
Eco24I	GRGCYC	3 cut(s)	126, 165, 390
Eco52I	CGGCCG	1 cut(s)	85
Eco53kI	GAGCTC	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRII	CCWGG	3 cut(s)	276, 374, 419
EcoT38I	GRGCYC	3 cut(s)	126, 165, 390
FaeI	CATG	1 cut(s)	208
FaiI	YATR	2 cut(s)	206, 249
FatI	CATG	1 cut(s)	204
Fnu4HI	GCNGC	4 cut(s)	6, 9, 85, 382
FokI	GGATG	4 cut(s)	152, 197, 239, 317
FriOI	GRGCYC	3 cut(s)	126, 165, 390
Fsp4HI	GCNGC	4 cut(s)	6, 9, 85, 382
FspAI	RTGCGCAY	1 cut(s)	209
FspI	TGCGCA	1 cut(s)	209
GlaI	GCGC	3 cut(s)	83, 209, 380
GluI	GCNGC	4 cut(s)	6, 9, 85, 382
HaeII	RGCGCY	1 cut(s)	382
HaeIII	GGCC	7 cut(s)	65, 87, 93, 155, 231, 275, 405
HapII	CCGG	2 cut(s)	134, 145
HhaI	GCGC	3 cut(s)	84, 210, 381
Hin1II	CATG	1 cut(s)	208
Hin6I	GCGC	3 cut(s)	82, 208, 379
HinP1I	GCGC	3 cut(s)	82, 208, 379
HinfI	GANTC	2 cut(s)	26, 355
HpaII	CCGG	2 cut(s)	134, 145
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	3 cut(s)	179, 243, 261
Hpy188III	TCNNGA	3 cut(s)	100, 268, 427
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	2 cut(s)	131, 200
HpyAV	CCTTC	3 cut(s)	214, 265, 313
HpyCH4III	ACNGT	3 cut(s)	110, 188, 440
HpyCH4IV	ACGT	2 cut(s)	198, 300
HpyCH4V	TGCA	1 cut(s)	78
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 45, 84, 90, 130, 281, 385
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	2 cut(s)	198, 300
Hsp92II	CATG	1 cut(s)	208
HspAI	GCGC	3 cut(s)	82, 208, 379
Kzo9I	GATC	4 cut(s)	102, 138, 243, 370
Lsp1109I	GCAGC	1 cut(s)	368
LweI	GCATC	2 cut(s)	219, 273
MaeII	ACGT	2 cut(s)	198, 300
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	4 cut(s)	104, 140, 245, 372
MboI	GATC	4 cut(s)	102, 138, 243, 370
MboII	GAAGA	1 cut(s)	64
MflI	RGATCY	2 cut(s)	138, 243
MhlI	GDGCHC	4 cut(s)	126, 165, 390, 415
MlyI	GAGTC	2 cut(s)	35, 349
MnlI	CCTC	6 cut(s)	104, 152, 179, 182, 185, 221
MseI	TTAA	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	215
MspI	CCGG	2 cut(s)	134, 145
MspR9I	CCNGG	3 cut(s)	278, 376, 421
MvaI	CCWGG	3 cut(s)	278, 376, 421
MvnI	CGCG	2 cut(s)	84, 269
MwoI	GCNNNNNNNGC	7 cut(s)	17, 45, 84, 90, 130, 281, 385
NdeII	GATC	4 cut(s)	102, 138, 243, 370
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	1 cut(s)	425
NmuCI	GTSAC	1 cut(s)	67
NruI	TCGCGA	1 cut(s)	269
NsbI	TGCGCA	1 cut(s)	209
NspI	RCATGY	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PkrI	GCNGC	4 cut(s)	7, 10, 86, 383
PleI	GAGTC	2 cut(s)	34, 349
PpsI	GAGTC	2 cut(s)	34, 349
Ppu21I	YACGTR	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	126
Psp6I	CCWGG	3 cut(s)	276, 374, 419
PspGI	CCWGG	3 cut(s)	276, 374, 419
PspN4I	GGNNCC	1 cut(s)	425
PspPI	GGNCC	1 cut(s)	274
PstNI	CAGNNNCTG	1 cut(s)	381
PsuI	RGATCY	2 cut(s)	138, 243
RruI	TCGCGA	1 cut(s)	269
RsaI	GTAC	2 cut(s)	299, 347
RsaNI	GTAC	2 cut(s)	298, 346
RseI	CAYNNNNRTG	1 cut(s)	215
SacI	GAGCTC	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	4 cut(s)	6, 9, 85, 382
Sau3AI	GATC	4 cut(s)	102, 138, 243, 370
Sau96I	GGNCC	1 cut(s)	274
SchI	GAGTC	2 cut(s)	35, 349
ScrFI	CCNGG	3 cut(s)	278, 376, 421
SduI	GDGCHC	4 cut(s)	126, 165, 390, 415
SetI	ASST	6 cut(s)	74, 126, 201, 303, 347, 425
SfaNI	GCATC	2 cut(s)	219, 273
SmiMI	CAYNNNNRTG	1 cut(s)	215
SseBI	AGGCCT	1 cut(s)	155
SsiI	CCGC	5 cut(s)	5, 8, 57, 84, 225
SstI	GAGCTC	1 cut(s)	126
StuI	AGGCCT	1 cut(s)	155
StyD4I	CCNGG	3 cut(s)	276, 374, 419
TaaI	ACNGT	3 cut(s)	110, 188, 440
TaiI	ACGT	2 cut(s)	201, 303
TaqI	TCGA	2 cut(s)	120, 129
TaqII	GACCGA	1 cut(s)	32
TauI	GCSGC	3 cut(s)	8, 11, 87
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	1 cut(s)	41
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	1 cut(s)	381
Tsp45I	GTSAC	1 cut(s)	67
TspGWI	ACGGA	3 cut(s)	19, 203, 245
TspRI	CASTG	1 cut(s)	41
XceI	RCATGY	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.