Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001512

Physical Location & Seq

Genomic Coordinates Reverse (-)

15936735 .. 15937244

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1187300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCGGCCCCAGCAATCGAGTCCGTACAATGCTTCGGGCGGAAGAAGACGGCGGTGGCAGTGACCTACTGCAAGCGCGGACGCGGCCTGATCAAGATCAACGGCTGCCCAATCGAGCTCGTGGAGCCGGAGATCCTCCGATTCAAGGCCTACGAGCCGATCCTGCTGCTCGGACGACAGCGCTTCGCCGGCGTGGACATGAGGATCCGAGTGAAAGGCGGAGGCCACACCTCCCAGATCTACGCGATCCGTCAGAGCATTGCCAAGGCCCTGGTGGCGTTTTACCAGAAGTACGTGGACGAGCAGAGCAAGAAGGAGATCAAGGACATCCTGATCAGGTACGACAGGACTCTCCTGGTGGCTGACCCCAGGCGCTGCGAGCCCAAGAAGTTCGGCGGTCGCGGTGCCAGATCCAGGTTCCAGAAGTCGTACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S9

Protein Analysis

146

Amino Acids

16.49

Weight (kDa)

10.13

Isoelectric Point (pI)

51.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S9	PF00380	13 - 144	8.1e-37	Ribosomal protein S9/S16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G09990 AT3G04230 AT5G18380 AT5G18380
fragaria_vesca	FvH4_2g05750
malus_domestica	MD05G1084000.v1.1 MD13G1187300.v1.1 MD16G1188000.v1.1
prunus_persica	Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.1G154800_v2.0.a1 Prupe.8G128300_v2.0.a1
pyrus_communis	pycom16g15800
rosa_chinensis	RchiOBHm_Chr2g0126911 RchiOBHm_Chr3g0469551 RchiOBHm_Chr4g0416971 RchiOBHm_Chr7g0205351
rosa_laevigata	RLG00000003385 RLG00000018927
rosa_multiflora	Rmu_co8452851.1_g000001 Rmu_sc0000007.1_g000029 Rmu_sc0007239.1_g000007 Rmu_sc0009725.1_g000007 Rmu_sc0022422.1_g000001 Rmu_ssc0000004.1_g000020 Rmu_ssc0000010.1_g000016
rosa_roxburghii	Rroxscaffold_2G00116930 Rroxscaffold_3G00252430 Rroxscaffold_5G00360850
rosa_rugosa	Rorug02G0270100 Rorug04G0145800 Rorug07G0090300 Rorug07G0289500 Rorug07G0320600
rosa_samantha	Rh1BG296000 Rh1DG328300 Rh2AG322400 Rh2BG330600 Rh2CG310500 Rh2DG349900 Rh4BG205400 Rh4CG219100 Rh4DG205800 Rh7AG220700 Rh7BG217000 Rh7BG274700 Rh7CG233700 Rh7DG227600
rosa_wichuraiana	Rw2G026150 Rw4G017650 Rw7G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	404
AccII	CGCG	4 cut(s)	78, 84, 245, 402
AciI	CCGC	8 cut(s)	5, 40, 53, 78, 84, 219, 396, 402
AclWI	GGATC	6 cut(s)	127, 154, 199, 212, 241, 405
AfaI	GTAC	4 cut(s)	27, 293, 341, 431
AfeI	AGCGCT	1 cut(s)	182
AfiI	CCNNNNNNNGG	2 cut(s)	145, 414
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	4 cut(s)	270, 354, 368, 413
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
Alw21I	GWGCWC	1 cut(s)	120
AlwI	GGATC	6 cut(s)	127, 154, 199, 212, 241, 405
AlwNI	CAGNNNCTG	1 cut(s)	375
Aor51HI	AGCGCT	1 cut(s)	182
AoxI	GGCC	5 cut(s)	6, 85, 147, 223, 267
ApeKI	GCWGC	3 cut(s)	105, 166, 375
AspLEI	GCGC	3 cut(s)	78, 183, 375
AspS9I	GGNCC	2 cut(s)	7, 268
BamHI	GGATCC	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	404
BanII	GRGCYC	2 cut(s)	120, 384
BauI	CACGAG	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	3 cut(s)	92, 153, 362
BceAI	ACGGC	2 cut(s)	66, 118
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BciT130I	CCWGG	4 cut(s)	272, 356, 370, 415
BclI	TGATCA	2 cut(s)	90, 333
BfoI	RGCGCY	2 cut(s)	184, 376
BglI	GCCNNNNNGGC	1 cut(s)	275
BglII	AGATCT	1 cut(s)	237
BisI	GCNGC	5 cut(s)	6, 85, 106, 167, 376
BlsI	GCNGC	5 cut(s)	7, 86, 107, 168, 377
Bme1390I	CCNGG	4 cut(s)	272, 356, 370, 415
BmgT120I	GGNCC	2 cut(s)	7, 268
BmiI	GGNNCC	5 cut(s)	9, 126, 206, 406, 419
BmrFI	CCNGG	4 cut(s)	272, 356, 370, 415
BpiI	GAAGAC	1 cut(s)	53
BsaAI	YACGTR	1 cut(s)	295
BsaBI	GATNNNNATC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	264, 270, 368
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 414
Bse118I	RCCGGY	1 cut(s)	188
Bse3DI	GCAATG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	95
BseBI	CCWGG	4 cut(s)	272, 356, 370, 415
BseDI	CCNNGG	3 cut(s)	264, 270, 368
BseGI	GGATG	1 cut(s)	327
BseJI	GATNNNNATC	1 cut(s)	95
BseLI	CCNNNNNNNGG	2 cut(s)	145, 414
BseMI	GCAATG	1 cut(s)	258
BseXI	GCAGC	3 cut(s)	92, 153, 362
BseYI	CCCAGC	1 cut(s)	10
Bsh1236I	CGCG	4 cut(s)	78, 84, 245, 402
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	5 cut(s)	8, 87, 149, 225, 269
BshNI	GGYRCC	1 cut(s)	404
BsiEI	CGRYCG	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	128, 189
BslI	CCNNNNNNNGG	2 cut(s)	145, 414
BsnI	GGCC	5 cut(s)	8, 87, 149, 225, 269
Bsp1286I	GDGCHC	2 cut(s)	120, 384
BspACI	CCGC	8 cut(s)	5, 40, 53, 78, 84, 219, 396, 402
BspANI	GGCC	5 cut(s)	8, 87, 149, 225, 269
BspFNI	CGCG	4 cut(s)	78, 84, 245, 402
BspLI	GGNNCC	5 cut(s)	9, 126, 206, 406, 419
BspPI	GGATC	6 cut(s)	127, 154, 199, 212, 241, 405
BspT107I	GGYRCC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	258
BsrFI	RCCGGY	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	3 cut(s)	264, 270, 368
BssSI	CACGAG	1 cut(s)	119
BssT1I	CCWWGG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	119
Bst2UI	CCWGG	4 cut(s)	272, 356, 370, 415
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	3 cut(s)	74, 190, 380
BstF5I	GGATG	1 cut(s)	327
BstFNI	CGCG	4 cut(s)	78, 84, 245, 402
BstH2I	RGCGCY	2 cut(s)	184, 376
BstHHI	GCGC	3 cut(s)	78, 183, 375
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 84, 124, 163, 189, 275, 379
BstNI	CCWGG	4 cut(s)	272, 356, 370, 415
BstSCI	CCNGG	4 cut(s)	270, 354, 368, 413
BstUI	CGCG	4 cut(s)	78, 84, 245, 402
BstV1I	GCAGC	3 cut(s)	92, 153, 362
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	4 cut(s)	132, 204, 237, 410
BstXI	CCANNNNNNTGG	1 cut(s)	271
BstYI	RGATCY	4 cut(s)	132, 204, 237, 410
BsuRI	GGCC	5 cut(s)	8, 87, 149, 225, 269
BtsCI	GGATG	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	3 cut(s)	74, 190, 380
CaiI	CAGNNNCTG	1 cut(s)	375
CfoI	GCGC	3 cut(s)	78, 183, 375
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	2 cut(s)	7, 268
CseI	GACGC	1 cut(s)	90
Csp6I	GTAC	4 cut(s)	26, 292, 340, 430
CviAII	CATG	1 cut(s)	199
CviQI	GTAC	4 cut(s)	26, 292, 340, 430
EciI	GGCGGA	2 cut(s)	55, 234
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	264
Eco147I	AGGCCT	1 cut(s)	149
Eco24I	GRGCYC	2 cut(s)	120, 384
Eco47III	AGCGCT	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRII	CCWGG	4 cut(s)	270, 354, 368, 413
EcoT14I	CCWWGG	1 cut(s)	264
EcoT38I	GRGCYC	2 cut(s)	120, 384
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	1 cut(s)	202
FaiI	YATR	1 cut(s)	200
FatI	CATG	1 cut(s)	198
FbaI	TGATCA	2 cut(s)	90, 333
Fnu4HI	GCNGC	5 cut(s)	6, 85, 106, 167, 376
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	2 cut(s)	120, 384
Fsp4HI	GCNGC	5 cut(s)	6, 85, 106, 167, 376
GlaI	GCGC	3 cut(s)	77, 182, 374
GluI	GCNGC	5 cut(s)	6, 85, 106, 167, 376
GsaI	CCCAGC	1 cut(s)	14
HaeII	RGCGCY	2 cut(s)	184, 376
HaeIII	GGCC	5 cut(s)	8, 87, 149, 225, 269
HapII	CCGG	2 cut(s)	128, 189
HgaI	GACGC	1 cut(s)	90
HhaI	GCGC	3 cut(s)	78, 183, 375
Hin1II	CATG	1 cut(s)	202
Hin6I	GCGC	3 cut(s)	76, 181, 373
HinP1I	GCGC	3 cut(s)	76, 181, 373
HinfI	GANTC	3 cut(s)	20, 141, 349
HpaII	CCGG	2 cut(s)	128, 189
Hpy166II	GTNNAC	2 cut(s)	196, 298
Hpy188I	TCNGA	4 cut(s)	140, 173, 209, 255
Hpy188III	TCNNGA	3 cut(s)	94, 331, 421
Hpy8I	GTNNAC	2 cut(s)	196, 298
HpyAV	CCTTC	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 84, 124, 163, 189, 275, 379
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	202
HspAI	GCGC	3 cut(s)	76, 181, 373
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Ksp22I	TGATCA	2 cut(s)	90, 333
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	3 cut(s)	92, 153, 362
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	61
MboII	GAAGA	2 cut(s)	55, 58
MflI	RGATCY	4 cut(s)	132, 204, 237, 410
MhlI	GDGCHC	2 cut(s)	120, 384
MlyI	GAGTC	2 cut(s)	29, 343
MnlI	CCTC	4 cut(s)	146, 195, 215, 241
MreI	CGCCGGCG	1 cut(s)	188
MroNI	GCCGGC	1 cut(s)	188
MspI	CCGG	2 cut(s)	128, 189
MspR9I	CCNGG	4 cut(s)	272, 356, 370, 415
MvaI	CCWGG	4 cut(s)	272, 356, 370, 415
MvnI	CGCG	4 cut(s)	78, 84, 245, 402
MwoI	GCNNNNNNNGC	7 cut(s)	11, 84, 124, 163, 189, 275, 379
NaeI	GCCGGC	1 cut(s)	190
NgoMIV	GCCGGC	1 cut(s)	188
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	5 cut(s)	9, 126, 206, 406, 419
NmuCI	GTSAC	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	149
PdiI	GCCGGC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	141
PkrI	GCNGC	5 cut(s)	7, 86, 107, 168, 377
PleI	GAGTC	2 cut(s)	28, 343
PpsI	GAGTC	2 cut(s)	28, 343
Ppu21I	YACGTR	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	4 cut(s)	270, 354, 368, 413
PspFI	CCCAGC	1 cut(s)	10
PspGI	CCWGG	4 cut(s)	270, 354, 368, 413
PspN4I	GGNNCC	5 cut(s)	9, 126, 206, 406, 419
PspPI	GGNCC	2 cut(s)	7, 268
PstNI	CAGNNNCTG	1 cut(s)	375
PsuI	RGATCY	4 cut(s)	132, 204, 237, 410
RsaI	GTAC	4 cut(s)	27, 293, 341, 431
RsaNI	GTAC	4 cut(s)	26, 292, 340, 430
SacI	GAGCTC	1 cut(s)	120
SatI	GCNGC	5 cut(s)	6, 85, 106, 167, 376
Sau96I	GGNCC	2 cut(s)	7, 268
SchI	GAGTC	2 cut(s)	29, 343
ScrFI	CCNGG	4 cut(s)	272, 356, 370, 415
SduI	GDGCHC	2 cut(s)	120, 384
SetI	ASST	7 cut(s)	68, 120, 233, 297, 341, 419, 435
SgrAI	CRCCGGYG	1 cut(s)	188
SseBI	AGGCCT	1 cut(s)	149
SsiI	CCGC	8 cut(s)	5, 40, 53, 78, 84, 219, 396, 402
SstI	GAGCTC	1 cut(s)	120
StuI	AGGCCT	1 cut(s)	149
StyD4I	CCNGG	4 cut(s)	270, 354, 368, 413
StyI	CCWWGG	1 cut(s)	264
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	2 cut(s)	18, 114
TauI	GCSGC	2 cut(s)	8, 87
TfiI	GAWTC	1 cut(s)	141
TscAI	CASTG	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	3 cut(s)	105, 166, 375
Tsp45I	GTSAC	1 cut(s)	61
TspGWI	ACGGA	2 cut(s)	13, 239
TspRI	CASTG	1 cut(s)	66
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.